Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 185, 400 |
| AcsI | RAATTY | 4 cut(s) | 587, 677, 976, 1090 |
| AfaI | GTAC | 3 cut(s) | 113, 204, 542 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 696, 697, 748, 1130 |
| AgsI | TTSAA | 7 cut(s) | 131, 238, 430, 448, 677, 1012, 1090 |
| AhlI | ACTAGT | 1 cut(s) | 869 |
| AjnI | CCWGG | 3 cut(s) | 949, 1129, 1206 |
| Alw21I | GWGCWC | 1 cut(s) | 1104 |
| Alw26I | GTCTC | 1 cut(s) | 658 |
| Ama87I | CYCGRG | 1 cut(s) | 1103 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 3 cut(s) | 77, 119, 912 |
| ApoI | RAATTY | 4 cut(s) | 587, 677, 976, 1090 |
| AspS9I | GGNCC | 2 cut(s) | 221, 1210 |
| AsuHPI | GGTGA | 3 cut(s) | 317, 640, 1086 |
| AsuII | TTCGAA | 1 cut(s) | 492 |
| AvaI | CYCGRG | 1 cut(s) | 1103 |
| AvaII | GGWCC | 1 cut(s) | 1210 |
| AxyI | CCTNAGG | 1 cut(s) | 747 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 440, 472 |
| BbsI | GAAGAC | 2 cut(s) | 839, 937 |
| Bbv12I | GWGCWC | 1 cut(s) | 1104 |
| BbvI | GCAGC | 3 cut(s) | 89, 131, 899 |
| BccI | CCATC | 3 cut(s) | 273, 336, 427 |
| BciT130I | CCWGG | 3 cut(s) | 951, 1131, 1208 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcoDI | GTCTC | 1 cut(s) | 658 |
| BcuI | ACTAGT | 1 cut(s) | 869 |
| BfaI | CTAG | 5 cut(s) | 261, 870, 1064, 1151, 1173 |
| BisI | GCNGC | 3 cut(s) | 78, 120, 913 |
| BlpI | GCTNAGC | 1 cut(s) | 160 |
| BlsI | GCNGC | 3 cut(s) | 79, 121, 914 |
| Bme1390I | CCNGG | 3 cut(s) | 951, 1131, 1208 |
| Bme18I | GGWCC | 1 cut(s) | 1210 |
| BmeT110I | CYCGRG | 1 cut(s) | 1103 |
| BmgT120I | GGNCC | 2 cut(s) | 221, 1210 |
| BmiI | GGNNCC | 1 cut(s) | 223 |
| BmrFI | CCNGG | 3 cut(s) | 951, 1131, 1208 |
| BmsI | GCATC | 2 cut(s) | 45, 562 |
| BpiI | GAAGAC | 2 cut(s) | 839, 937 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 160 |
| Bpu14I | TTCGAA | 1 cut(s) | 492 |
| BpuEI | CTTGAG | 1 cut(s) | 542 |
| Bsa29I | ATCGAT | 1 cut(s) | 277 |
| BsaJI | CCNNGG | 2 cut(s) | 949, 950 |
| BsaWI | WCCGGW | 1 cut(s) | 1167 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 696, 697, 748, 1130 |
| Bse1I | ACTGG | 1 cut(s) | 103 |
| Bse21I | CCTNAGG | 1 cut(s) | 747 |
| Bse3DI | GCAATG | 1 cut(s) | 129 |
| BseBI | CCWGG | 3 cut(s) | 951, 1131, 1208 |
| BseCI | ATCGAT | 1 cut(s) | 277 |
| BseDI | CCNNGG | 2 cut(s) | 949, 950 |
| BseGI | GGATG | 3 cut(s) | 419, 622, 1116 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 696, 697, 748, 1130 |
| BseMI | GCAATG | 1 cut(s) | 129 |
| BseMII | CTCAG | 3 cut(s) | 174, 761, 1197 |
| BseNI | ACTGG | 1 cut(s) | 103 |
| BseRI | GAGGAG | 1 cut(s) | 893 |
| BseXI | GCAGC | 3 cut(s) | 89, 131, 899 |
| BseYI | CCCAGC | 1 cut(s) | 916 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BshVI | ATCGAT | 1 cut(s) | 277 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1104 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1103 |
| BsiSI | CCGG | 1 cut(s) | 1168 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 696, 697, 748, 1130 |
| BsmAI | GTCTC | 1 cut(s) | 658 |
| BsnI | GGCC | 1 cut(s) | 222 |
| BsoBI | CYCGRG | 1 cut(s) | 1103 |
| Bsp119I | TTCGAA | 1 cut(s) | 492 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1104 |
| Bsp143I | GATC | 3 cut(s) | 196, 250, 274 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 160 |
| BspACI | CCGC | 2 cut(s) | 185, 400 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspCNI | CTCAG | 3 cut(s) | 173, 760, 1196 |
| BspDI | ATCGAT | 1 cut(s) | 277 |
| BspHI | TCATGA | 1 cut(s) | 564 |
| BspLI | GGNNCC | 1 cut(s) | 223 |
| BspQI | GCTCTTC | 1 cut(s) | 443 |
| BspT104I | TTCGAA | 1 cut(s) | 492 |
| BsrDI | GCAATG | 1 cut(s) | 129 |
| BsrI | ACTGG | 1 cut(s) | 103 |
| BssECI | CCNNGG | 2 cut(s) | 949, 950 |
| BssMI | GATC | 3 cut(s) | 196, 250, 274 |
| Bst2UI | CCWGG | 3 cut(s) | 951, 1131, 1208 |
| Bst4CI | ACNGT | 6 cut(s) | 545, 551, 710, 773, 845, 1117 |
| Bst6I | CTCTTC | 1 cut(s) | 443 |
| BstBI | TTCGAA | 1 cut(s) | 492 |
| BstC8I | GCNNGC | 5 cut(s) | 62, 743, 810, 1179, 1191 |
| BstDEI | CTNAG | 5 cut(s) | 160, 734, 747, 860, 1183 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 746 |
| BstF5I | GGATG | 3 cut(s) | 419, 622, 1116 |
| BstKTI | GATC | 3 cut(s) | 199, 253, 277 |
| BstMAI | GTCTC | 1 cut(s) | 658 |
| BstMBI | GATC | 3 cut(s) | 196, 250, 274 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 800, 809 |
| BstNI | CCWGG | 3 cut(s) | 951, 1131, 1208 |
| BstNSI | RCATGY | 1 cut(s) | 1193 |
| BstSCI | CCNGG | 3 cut(s) | 949, 1129, 1206 |
| BstV1I | GCAGC | 3 cut(s) | 89, 131, 899 |
| BstV2I | GAAGAC | 2 cut(s) | 839, 937 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 664 |
| Bsu15I | ATCGAT | 1 cut(s) | 277 |
| Bsu36I | CCTNAGG | 1 cut(s) | 747 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BsuTUI | ATCGAT | 1 cut(s) | 277 |
| BtsCI | GGATG | 3 cut(s) | 419, 622, 1116 |
| BtsIMutI | CAGTG | 3 cut(s) | 110, 158, 1191 |
| Cac8I | GCNNGC | 5 cut(s) | 62, 743, 810, 1179, 1191 |
| CciI | TCATGA | 1 cut(s) | 564 |
| Cfr13I | GGNCC | 2 cut(s) | 221, 1210 |
| ClaI | ATCGAT | 1 cut(s) | 277 |
| CseI | GACGC | 1 cut(s) | 83 |
| Csp6I | GTAC | 3 cut(s) | 112, 203, 541 |
| CviAII | CATG | 6 cut(s) | 57, 200, 357, 565, 828, 1190 |
| CviQI | GTAC | 3 cut(s) | 112, 203, 541 |
| DdeI | CTNAG | 5 cut(s) | 160, 734, 747, 860, 1183 |
| DpnI | GATC | 3 cut(s) | 198, 252, 276 |
| DpnII | GATC | 3 cut(s) | 196, 250, 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 443 |
| EarI | CTCTTC | 1 cut(s) | 443 |
| Eco32I | GATATC | 1 cut(s) | 1079 |
| Eco47I | GGWCC | 1 cut(s) | 1210 |
| Eco81I | CCTNAGG | 1 cut(s) | 747 |
| Eco88I | CYCGRG | 1 cut(s) | 1103 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 746 |
| EcoRI | GAATTC | 3 cut(s) | 677, 976, 1090 |
| EcoRII | CCWGG | 3 cut(s) | 949, 1129, 1206 |
| EcoRV | GATATC | 1 cut(s) | 1079 |
| FaeI | CATG | 6 cut(s) | 60, 203, 360, 568, 831, 1193 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1187 |
| FatI | CATG | 6 cut(s) | 56, 199, 356, 564, 827, 1189 |
| FauI | CCCGC | 1 cut(s) | 407 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 3 cut(s) | 78, 120, 913 |
| FokI | GGATG | 3 cut(s) | 406, 629, 1123 |
| Fsp4HI | GCNGC | 3 cut(s) | 78, 120, 913 |
| FspBI | CTAG | 5 cut(s) | 261, 870, 1064, 1151, 1173 |
| GluI | GCNGC | 3 cut(s) | 78, 120, 913 |
| GsaI | CCCAGC | 1 cut(s) | 920 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HapII | CCGG | 1 cut(s) | 1168 |
| HgaI | GACGC | 1 cut(s) | 83 |
| Hin1II | CATG | 6 cut(s) | 60, 203, 360, 568, 831, 1193 |
| HindIII | AAGCTT | 2 cut(s) | 239, 862 |
| HinfI | GANTC | 4 cut(s) | 283, 349, 730, 1139 |
| HpaII | CCGG | 1 cut(s) | 1168 |
| HphI | GGTGA | 3 cut(s) | 317, 640, 1086 |
| Hpy166II | GTNNAC | 2 cut(s) | 541, 1036 |
| Hpy188I | TCNGA | 5 cut(s) | 706, 756, 840, 1046, 1076 |
| Hpy188III | TCNNGA | 8 cut(s) | 248, 297, 374, 439, 565, 593, 727, 1105 |
| Hpy8I | GTNNAC | 2 cut(s) | 541, 1036 |
| Hpy99I | CGWCG | 1 cut(s) | 1147 |
| HpyAV | CCTTC | 3 cut(s) | 64, 363, 1213 |
| HpyCH4III | ACNGT | 6 cut(s) | 545, 551, 710, 773, 845, 1117 |
| HpyCH4V | TGCA | 4 cut(s) | 575, 925, 1021, 1189 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 800, 809 |
| HpyF3I | CTNAG | 5 cut(s) | 160, 734, 747, 860, 1183 |
| Hsp92II | CATG | 6 cut(s) | 60, 203, 360, 568, 831, 1193 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 3 cut(s) | 196, 250, 274 |
| LguI | GCTCTTC | 1 cut(s) | 443 |
| LmnI | GCTCC | 1 cut(s) | 1170 |
| Lsp1109I | GCAGC | 3 cut(s) | 89, 131, 899 |
| LweI | GCATC | 2 cut(s) | 45, 562 |
| MaeI | CTAG | 5 cut(s) | 261, 870, 1064, 1151, 1173 |
| MaeIII | GTNAC | 1 cut(s) | 545 |
| MalI | GATC | 3 cut(s) | 198, 252, 276 |
| MboI | GATC | 3 cut(s) | 196, 250, 274 |
| MboII | GAAGA | 7 cut(s) | 278, 460, 614, 680, 839, 937, 1207 |
| MhlI | GDGCHC | 1 cut(s) | 1104 |
| MluCI | AATT | 7 cut(s) | 15, 381, 587, 677, 718, 976, 1090 |
| MlyI | GAGTC | 1 cut(s) | 1148 |
| MmeI | TCCRAC | 1 cut(s) | 946 |
| MseI | TTAA | 5 cut(s) | 530, 612, 782, 866, 887 |
| MspA1I | CMGCKG | 1 cut(s) | 402 |
| MspI | CCGG | 1 cut(s) | 1168 |
| MspR9I | CCNGG | 3 cut(s) | 951, 1131, 1208 |
| MvaI | CCWGG | 3 cut(s) | 951, 1131, 1208 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 800, 809 |
| NdeII | GATC | 3 cut(s) | 196, 250, 274 |
| NlaIII | CATG | 6 cut(s) | 60, 203, 360, 568, 831, 1193 |
| NlaIV | GGNNCC | 1 cut(s) | 223 |
| NmuCI | GTSAC | 1 cut(s) | 545 |
| NspI | RCATGY | 1 cut(s) | 1193 |
| NspV | TTCGAA | 1 cut(s) | 492 |
| PaeI | GCATGC | 1 cut(s) | 1193 |
| PaeR7I | CTCGAG | 1 cut(s) | 1103 |
| PagI | TCATGA | 1 cut(s) | 564 |
| PasI | CCCWGGG | 1 cut(s) | 950 |
| PciSI | GCTCTTC | 1 cut(s) | 443 |
| PfeI | GAWTC | 3 cut(s) | 283, 349, 730 |
| PflFI | GACNNNGTC | 1 cut(s) | 828 |
| PfoI | TCCNGGA | 1 cut(s) | 1206 |
| PkrI | GCNGC | 3 cut(s) | 79, 121, 914 |
| PleI | GAGTC | 1 cut(s) | 1147 |
| PpsI | GAGTC | 1 cut(s) | 1147 |
| Psp6I | CCWGG | 3 cut(s) | 949, 1129, 1206 |
| PspFI | CCCAGC | 1 cut(s) | 916 |
| PspGI | CCWGG | 3 cut(s) | 949, 1129, 1206 |
| PspN4I | GGNNCC | 1 cut(s) | 223 |
| PspPI | GGNCC | 2 cut(s) | 221, 1210 |
| PsyI | GACNNNGTC | 1 cut(s) | 828 |
| RsaI | GTAC | 3 cut(s) | 113, 204, 542 |
| RsaNI | GTAC | 3 cut(s) | 112, 203, 541 |
| SapI | GCTCTTC | 1 cut(s) | 443 |
| SaqAI | TTAA | 5 cut(s) | 530, 612, 782, 866, 887 |
| SatI | GCNGC | 3 cut(s) | 78, 120, 913 |
| Sau3AI | GATC | 3 cut(s) | 196, 250, 274 |
| Sau96I | GGNCC | 2 cut(s) | 221, 1210 |
| SchI | GAGTC | 1 cut(s) | 1148 |
| ScrFI | CCNGG | 3 cut(s) | 951, 1131, 1208 |
| SduI | GDGCHC | 1 cut(s) | 1104 |
| SfaNI | GCATC | 2 cut(s) | 45, 562 |
| Sfr274I | CTCGAG | 1 cut(s) | 1103 |
| SfuI | TTCGAA | 1 cut(s) | 492 |
| SinI | GGWCC | 1 cut(s) | 1210 |
| SlaI | CTCGAG | 1 cut(s) | 1103 |
| SmlI | CTYRAG | 2 cut(s) | 521, 1103 |
| SmoI | CTYRAG | 2 cut(s) | 521, 1103 |
| SpeI | ACTAGT | 1 cut(s) | 869 |
| SphI | GCATGC | 1 cut(s) | 1193 |
| Sse9I | AATT | 7 cut(s) | 15, 381, 587, 677, 718, 976, 1090 |
| SsiI | CCGC | 2 cut(s) | 185, 400 |
| SspI | AATATT | 1 cut(s) | 51 |
| SspMI | CTAG | 5 cut(s) | 261, 870, 1064, 1151, 1173 |
| StyD4I | CCNGG | 3 cut(s) | 949, 1129, 1206 |
| TaaI | ACNGT | 6 cut(s) | 545, 551, 710, 773, 845, 1117 |
| TaqI | TCGA | 9 cut(s) | 42, 144, 247, 277, 492, 713, 762, 1104, 1145 |
| TasI | AATT | 7 cut(s) | 15, 381, 587, 677, 718, 976, 1090 |
| TatI | WGTACW | 2 cut(s) | 202, 540 |
| TfiI | GAWTC | 3 cut(s) | 283, 349, 730 |
| Tru1I | TTAA | 5 cut(s) | 530, 612, 782, 866, 887 |
| Tru9I | TTAA | 5 cut(s) | 530, 612, 782, 866, 887 |
| TscAI | CASTG | 3 cut(s) | 110, 158, 1191 |
| TseFI | GTSAC | 1 cut(s) | 545 |
| TseI | GCWGC | 3 cut(s) | 77, 119, 912 |
| Tsp45I | GTSAC | 1 cut(s) | 545 |
| TspDTI | ATGAA | 6 cut(s) | 83, 278, 307, 345, 839, 996 |
| TspRI | CASTG | 3 cut(s) | 110, 158, 1191 |
| Tth111I | GACNNNGTC | 1 cut(s) | 828 |
| VpaK11BI | GGWCC | 1 cut(s) | 1210 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 746 |
| XapI | RAATTY | 4 cut(s) | 587, 677, 976, 1090 |
| XceI | RCATGY | 1 cut(s) | 1193 |
| XhoI | CTCGAG | 1 cut(s) | 1103 |
| XspI | CTAG | 5 cut(s) | 261, 870, 1064, 1151, 1173 |