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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 224 |
| AclWI | GGATC | 2 cut(s) | 4, 146 |
| AcuI | CTGAAG | 1 cut(s) | 470 |
| AfaI | GTAC | 2 cut(s) | 382, 506 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 19, 325, 377 |
| AgsI | TTSAA | 2 cut(s) | 110, 201 |
| AjnI | CCWGG | 6 cut(s) | 12, 84, 117, 175, 318, 517 |
| AluBI | AGCT | 1 cut(s) | 458 |
| AluI | AGCT | 1 cut(s) | 458 |
| AlwI | GGATC | 2 cut(s) | 4, 146 |
| Ama87I | CYCGRG | 1 cut(s) | 459 |
| AoxI | GGCC | 1 cut(s) | 131 |
| ApeKI | GCWGC | 1 cut(s) | 185 |
| AspS9I | GGNCC | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 3 cut(s) | 109, 148, 423 |
| AvaI | CYCGRG | 1 cut(s) | 459 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| BauI | CACGAG | 1 cut(s) | 534 |
| BbvI | GCAGC | 1 cut(s) | 172 |
| BccI | CCATC | 3 cut(s) | 41, 65, 94 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 331, 365 |
| BciT130I | CCWGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| BciVI | GTATCC | 1 cut(s) | 328 |
| BclI | TGATCA | 1 cut(s) | 303 |
| BfaI | CTAG | 2 cut(s) | 221, 255 |
| BfuI | GTATCC | 1 cut(s) | 328 |
| BisI | GCNGC | 2 cut(s) | 186, 225 |
| BlsI | GCNGC | 2 cut(s) | 187, 226 |
| Bme1390I | CCNGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmeT110I | CYCGRG | 1 cut(s) | 459 |
| BmgT120I | GGNCC | 1 cut(s) | 59 |
| BmrFI | CCNGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| BpmI | CTGGAG | 1 cut(s) | 68 |
| BsaBI | GATNNNNATC | 1 cut(s) | 216 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 423, 453 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 19, 325, 377 |
| Bse118I | RCCGGY | 2 cut(s) | 133, 338 |
| Bse8I | GATNNNNATC | 1 cut(s) | 216 |
| BseBI | CCWGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| BseGI | GGATG | 2 cut(s) | 304, 489 |
| BseJI | GATNNNNATC | 1 cut(s) | 216 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 19, 325, 377 |
| BseMII | CTCAG | 1 cut(s) | 20 |
| BseRI | GAGGAG | 1 cut(s) | 255 |
| BseXI | GCAGC | 1 cut(s) | 172 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BsgI | GTGCAG | 1 cut(s) | 110 |
| BshFI | GGCC | 1 cut(s) | 133 |
| BsiHKCI | CYCGRG | 1 cut(s) | 459 |
| BsiSI | CCGG | 2 cut(s) | 134, 339 |
| BslFI | GGGAC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 19, 325, 377 |
| BsmFI | GGGAC | 1 cut(s) | 89 |
| BsnI | GGCC | 1 cut(s) | 133 |
| BsoBI | CYCGRG | 1 cut(s) | 459 |
| Bsp143I | GATC | 4 cut(s) | 9, 79, 151, 303 |
| BspACI | CCGC | 1 cut(s) | 224 |
| BspANI | GGCC | 1 cut(s) | 133 |
| BspCNI | CTCAG | 1 cut(s) | 19 |
| BspPI | GGATC | 2 cut(s) | 4, 146 |
| BsrFI | RCCGGY | 2 cut(s) | 133, 338 |
| BssAI | RCCGGY | 2 cut(s) | 133, 338 |
| BssMI | GATC | 4 cut(s) | 9, 79, 151, 303 |
| BssSI | CACGAG | 1 cut(s) | 534 |
| Bst2BI | CACGAG | 1 cut(s) | 534 |
| Bst2UI | CCWGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| Bst4CI | ACNGT | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 2 cut(s) | 252, 344 |
| BstDEI | CTNAG | 2 cut(s) | 6, 384 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 323, 375 |
| BstF5I | GGATG | 2 cut(s) | 304, 489 |
| BstKTI | GATC | 4 cut(s) | 12, 82, 154, 306 |
| BstMBI | GATC | 4 cut(s) | 9, 79, 151, 303 |
| BstNI | CCWGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 6 cut(s) | 12, 84, 117, 175, 318, 517 |
| BstV1I | GCAGC | 1 cut(s) | 172 |
| BstX2I | RGATCY | 1 cut(s) | 9 |
| BstYI | RGATCY | 1 cut(s) | 9 |
| BsuI | GTATCC | 1 cut(s) | 328 |
| BsuRI | GGCC | 1 cut(s) | 133 |
| BtsCI | GGATG | 2 cut(s) | 304, 489 |
| Cac8I | GCNNGC | 2 cut(s) | 252, 344 |
| Cfr10I | RCCGGY | 2 cut(s) | 133, 338 |
| Cfr13I | GGNCC | 1 cut(s) | 59 |
| CsiI | ACCWGGT | 1 cut(s) | 117 |
| Csp6I | GTAC | 2 cut(s) | 381, 505 |
| CviAII | CATG | 2 cut(s) | 343, 445 |
| CviQI | GTAC | 2 cut(s) | 381, 505 |
| DdeI | CTNAG | 2 cut(s) | 6, 384 |
| DpnI | GATC | 4 cut(s) | 11, 81, 153, 305 |
| DpnII | GATC | 4 cut(s) | 9, 79, 151, 303 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| Eco57I | CTGAAG | 1 cut(s) | 470 |
| Eco88I | CYCGRG | 1 cut(s) | 459 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 323, 375 |
| EcoRII | CCWGG | 6 cut(s) | 12, 84, 117, 175, 318, 517 |
| FaeI | CATG | 2 cut(s) | 346, 448 |
| FaiI | YATR | 6 cut(s) | 26, 344, 363, 446, 482, 541 |
| FaqI | GGGAC | 1 cut(s) | 89 |
| FatI | CATG | 2 cut(s) | 342, 444 |
| FbaI | TGATCA | 1 cut(s) | 303 |
| Fnu4HI | GCNGC | 2 cut(s) | 186, 225 |
| FokI | GGATG | 2 cut(s) | 311, 476 |
| Fsp4HI | GCNGC | 2 cut(s) | 186, 225 |
| FspBI | CTAG | 2 cut(s) | 221, 255 |
| GluI | GCNGC | 2 cut(s) | 186, 225 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| GsuI | CTGGAG | 1 cut(s) | 68 |
| HaeIII | GGCC | 1 cut(s) | 133 |
| HapII | CCGG | 2 cut(s) | 134, 339 |
| Hin1II | CATG | 2 cut(s) | 346, 448 |
| HincII | GTYRAC | 1 cut(s) | 260 |
| HindII | GTYRAC | 1 cut(s) | 260 |
| HinfI | GANTC | 1 cut(s) | 236 |
| HpaII | CCGG | 2 cut(s) | 134, 339 |
| HphI | GGTGA | 3 cut(s) | 109, 148, 423 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 46 |
| Hpy188III | TCNNGA | 1 cut(s) | 269 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| HpyAV | CCTTC | 2 cut(s) | 13, 207 |
| HpyCH4III | ACNGT | 1 cut(s) | 315 |
| HpyCH4V | TGCA | 1 cut(s) | 91 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 384 |
| Hsp92II | CATG | 2 cut(s) | 346, 448 |
| Ksp22I | TGATCA | 1 cut(s) | 303 |
| Kzo9I | GATC | 4 cut(s) | 9, 79, 151, 303 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| Lsp1109I | GCAGC | 1 cut(s) | 172 |
| MabI | ACCWGGT | 1 cut(s) | 117 |
| MaeI | CTAG | 2 cut(s) | 221, 255 |
| MaeIII | GTNAC | 2 cut(s) | 285, 429 |
| MalI | GATC | 4 cut(s) | 11, 81, 153, 305 |
| MboI | GATC | 4 cut(s) | 9, 79, 151, 303 |
| MflI | RGATCY | 1 cut(s) | 9 |
| MnlI | CCTC | 7 cut(s) | 72, 87, 123, 178, 273, 276, 394 |
| MseI | TTAA | 3 cut(s) | 216, 416, 524 |
| MspI | CCGG | 2 cut(s) | 134, 339 |
| MspR9I | CCNGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| MvaI | CCWGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| NdeII | GATC | 4 cut(s) | 9, 79, 151, 303 |
| NlaIII | CATG | 2 cut(s) | 346, 448 |
| NmuCI | GTSAC | 2 cut(s) | 285, 429 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PaeI | GCATGC | 1 cut(s) | 346 |
| PaeR7I | CTCGAG | 1 cut(s) | 459 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PfoI | TCCNGGA | 1 cut(s) | 517 |
| PkrI | GCNGC | 2 cut(s) | 187, 226 |
| Psp6I | CCWGG | 6 cut(s) | 12, 84, 117, 175, 318, 517 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| PspGI | CCWGG | 6 cut(s) | 12, 84, 117, 175, 318, 517 |
| PspPI | GGNCC | 1 cut(s) | 59 |
| PspXI | VCTCGAGB | 1 cut(s) | 459 |
| PsuI | RGATCY | 1 cut(s) | 9 |
| RsaI | GTAC | 2 cut(s) | 382, 506 |
| RsaNI | GTAC | 2 cut(s) | 381, 505 |
| SaqAI | TTAA | 3 cut(s) | 216, 416, 524 |
| SatI | GCNGC | 2 cut(s) | 186, 225 |
| Sau3AI | GATC | 4 cut(s) | 9, 79, 151, 303 |
| Sau96I | GGNCC | 1 cut(s) | 59 |
| ScrFI | CCNGG | 6 cut(s) | 14, 86, 119, 177, 320, 519 |
| SetI | ASST | 9 cut(s) | 58, 70, 90, 123, 265, 368, 382, 460, 504 |
| SexAI | ACCWGGT | 1 cut(s) | 117 |
| Sfr274I | CTCGAG | 1 cut(s) | 459 |
| SinI | GGWCC | 1 cut(s) | 59 |
| SlaI | CTCGAG | 1 cut(s) | 459 |
| SmlI | CTYRAG | 1 cut(s) | 459 |
| SmoI | CTYRAG | 1 cut(s) | 459 |
| SphI | GCATGC | 1 cut(s) | 346 |
| SsiI | CCGC | 1 cut(s) | 224 |
| SspMI | CTAG | 2 cut(s) | 221, 255 |
| StyD4I | CCNGG | 6 cut(s) | 12, 84, 117, 175, 318, 517 |
| TaaI | ACNGT | 1 cut(s) | 315 |
| TaqI | TCGA | 2 cut(s) | 64, 460 |
| TauI | GCSGC | 1 cut(s) | 227 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 3 cut(s) | 216, 416, 524 |
| Tru9I | TTAA | 3 cut(s) | 216, 416, 524 |
| TseFI | GTSAC | 2 cut(s) | 285, 429 |
| TseI | GCWGC | 1 cut(s) | 185 |
| Tsp45I | GTSAC | 2 cut(s) | 285, 429 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 323, 375 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 515 |
| XhoI | CTCGAG | 1 cut(s) | 459 |
| XspI | CTAG | 2 cut(s) | 221, 255 |