Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 275 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 16, 159, 197, 389 |
| AccII | CGCG | 1 cut(s) | 219 |
| AciI | CCGC | 3 cut(s) | 112, 462, 616 |
| AcyI | GRCGYC | 2 cut(s) | 272, 516 |
| AfaI | GTAC | 2 cut(s) | 288, 478 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 16, 159, 197, 314, 389 |
| AflIII | ACRYGT | 1 cut(s) | 479 |
| AjnI | CCWGG | 1 cut(s) | 610 |
| AluBI | AGCT | 1 cut(s) | 588 |
| AluI | AGCT | 1 cut(s) | 588 |
| AoxI | GGCC | 3 cut(s) | 353, 613, 649 |
| ApeKI | GCWGC | 2 cut(s) | 242, 504 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 262, 294, 393, 425 |
| AspLEI | GCGC | 3 cut(s) | 152, 221, 247 |
| AspS9I | GGNCC | 1 cut(s) | 114 |
| AsuHPI | GGTGA | 4 cut(s) | 216, 269, 329, 359 |
| AvaII | GGWCC | 1 cut(s) | 114 |
| AxyI | CCTNAGG | 1 cut(s) | 653 |
| BanII | GRGCYC | 2 cut(s) | 37, 661 |
| BbvI | GCAGC | 2 cut(s) | 254, 491 |
| BccI | CCATC | 4 cut(s) | 18, 153, 203, 452 |
| BciT130I | CCWGG | 1 cut(s) | 612 |
| BfaI | CTAG | 4 cut(s) | 511, 529, 544, 561 |
| BisI | GCNGC | 3 cut(s) | 243, 505, 616 |
| BlsI | GCNGC | 3 cut(s) | 244, 506, 617 |
| Bme1390I | CCNGG | 1 cut(s) | 612 |
| Bme18I | GGWCC | 1 cut(s) | 114 |
| BmgT120I | GGNCC | 1 cut(s) | 114 |
| BmiI | GGNNCC | 4 cut(s) | 184, 445, 609, 660 |
| BmrFI | CCNGG | 1 cut(s) | 612 |
| BmsI | GCATC | 2 cut(s) | 13, 256 |
| BpmI | CTGGAG | 1 cut(s) | 430 |
| BpuEI | CTTGAG | 1 cut(s) | 582 |
| BsaHI | GRCGYC | 2 cut(s) | 272, 516 |
| BsaJI | CCNNGG | 3 cut(s) | 107, 117, 196 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 16, 159, 197, 314, 389 |
| Bse1I | ACTGG | 2 cut(s) | 259, 447 |
| Bse21I | CCTNAGG | 1 cut(s) | 653 |
| Bse3DI | GCAATG | 1 cut(s) | 445 |
| BseBI | CCWGG | 1 cut(s) | 612 |
| BseDI | CCNNGG | 3 cut(s) | 107, 117, 196 |
| BseGI | GGATG | 6 cut(s) | 28, 214, 239, 247, 379, 402 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 16, 159, 197, 314, 389 |
| BseMI | GCAATG | 1 cut(s) | 445 |
| BseMII | CTCAG | 1 cut(s) | 667 |
| BseNI | ACTGG | 2 cut(s) | 259, 447 |
| BseRI | GAGGAG | 1 cut(s) | 132 |
| BseXI | GCAGC | 2 cut(s) | 254, 491 |
| BsgI | GTGCAG | 1 cut(s) | 453 |
| Bsh1236I | CGCG | 1 cut(s) | 219 |
| BshFI | GGCC | 3 cut(s) | 355, 615, 651 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 16, 159, 197, 314, 389 |
| BsnI | GGCC | 3 cut(s) | 355, 615, 651 |
| Bsp1286I | GDGCHC | 2 cut(s) | 37, 661 |
| Bsp1407I | TGTACA | 1 cut(s) | 476 |
| Bsp143I | GATC | 4 cut(s) | 77, 89, 323, 557 |
| Bsp19I | CCATGG | 3 cut(s) | 107, 117, 196 |
| BspACI | CCGC | 3 cut(s) | 112, 462, 616 |
| BspANI | GGCC | 3 cut(s) | 355, 615, 651 |
| BspCNI | CTCAG | 1 cut(s) | 666 |
| BspFNI | CGCG | 1 cut(s) | 219 |
| BspLI | GGNNCC | 4 cut(s) | 184, 445, 609, 660 |
| BspQI | GCTCTTC | 1 cut(s) | 232 |
| BsrDI | GCAATG | 1 cut(s) | 445 |
| BsrGI | TGTACA | 1 cut(s) | 476 |
| BsrI | ACTGG | 2 cut(s) | 259, 447 |
| BssECI | CCNNGG | 3 cut(s) | 107, 117, 196 |
| BssMI | GATC | 4 cut(s) | 77, 89, 323, 557 |
| BssNI | GRCGYC | 2 cut(s) | 272, 516 |
| BssT1I | CCWWGG | 3 cut(s) | 107, 117, 196 |
| Bst2UI | CCWGG | 1 cut(s) | 612 |
| Bst4CI | ACNGT | 4 cut(s) | 228, 291, 314, 369 |
| Bst6I | CTCTTC | 1 cut(s) | 232 |
| BstACI | GRCGYC | 2 cut(s) | 272, 516 |
| BstAUI | TGTACA | 1 cut(s) | 476 |
| BstC8I | GCNNGC | 1 cut(s) | 436 |
| BstDEI | CTNAG | 1 cut(s) | 653 |
| BstDSI | CCRYGG | 3 cut(s) | 107, 117, 196 |
| BstF5I | GGATG | 6 cut(s) | 28, 214, 239, 247, 379, 402 |
| BstFNI | CGCG | 1 cut(s) | 219 |
| BstHHI | GCGC | 3 cut(s) | 152, 221, 247 |
| BstKTI | GATC | 5 cut(s) | 80, 92, 326, 560, 675 |
| BstMBI | GATC | 4 cut(s) | 77, 89, 323, 557 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 513 |
| BstNI | CCWGG | 1 cut(s) | 612 |
| BstNSI | RCATGY | 1 cut(s) | 483 |
| BstSCI | CCNGG | 1 cut(s) | 610 |
| BstUI | CGCG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 2 cut(s) | 254, 491 |
| Bsu36I | CCTNAGG | 1 cut(s) | 653 |
| BsuRI | GGCC | 3 cut(s) | 355, 615, 651 |
| BtgI | CCRYGG | 3 cut(s) | 107, 117, 196 |
| BtsCI | GGATG | 6 cut(s) | 28, 214, 239, 247, 379, 402 |
| Cac8I | GCNNGC | 1 cut(s) | 436 |
| CfoI | GCGC | 3 cut(s) | 152, 221, 247 |
| Cfr13I | GGNCC | 1 cut(s) | 114 |
| CseI | GACGC | 1 cut(s) | 505 |
| Csp6I | GTAC | 2 cut(s) | 287, 477 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 350, 385 |
| CviAII | CATG | 7 cut(s) | 45, 108, 118, 197, 384, 480, 591 |
| CviJI | RGCY | 9 cut(s) | 35, 355, 444, 467, 588, 615, 643, 651, 659 |
| CviKI_1 | RGCY | 9 cut(s) | 35, 355, 444, 467, 588, 615, 643, 651, 659 |
| CviQI | GTAC | 2 cut(s) | 287, 477 |
| DdeI | CTNAG | 1 cut(s) | 653 |
| DpnI | GATC | 5 cut(s) | 79, 91, 325, 559, 674 |
| DpnII | GATC | 4 cut(s) | 77, 89, 323, 557 |
| Eam1104I | CTCTTC | 1 cut(s) | 232 |
| EarI | CTCTTC | 1 cut(s) | 232 |
| Eco130I | CCWWGG | 3 cut(s) | 107, 117, 196 |
| Eco147I | AGGCCT | 2 cut(s) | 355, 651 |
| Eco24I | GRGCYC | 2 cut(s) | 37, 661 |
| Eco47I | GGWCC | 1 cut(s) | 114 |
| Eco81I | CCTNAGG | 1 cut(s) | 653 |
| EcoRII | CCWGG | 1 cut(s) | 610 |
| EcoT14I | CCWWGG | 3 cut(s) | 107, 117, 196 |
| EcoT38I | GRGCYC | 2 cut(s) | 37, 661 |
| ErhI | CCWWGG | 3 cut(s) | 107, 117, 196 |
| FaeI | CATG | 7 cut(s) | 48, 111, 121, 200, 387, 483, 594 |
| FatI | CATG | 7 cut(s) | 44, 107, 117, 196, 383, 479, 590 |
| FauI | CCCGC | 1 cut(s) | 455 |
| FauNDI | CATATG | 1 cut(s) | 155 |
| Fnu4HI | GCNGC | 3 cut(s) | 243, 505, 616 |
| FokI | GGATG | 6 cut(s) | 35, 221, 234, 246, 366, 409 |
| FriOI | GRGCYC | 2 cut(s) | 37, 661 |
| Fsp4HI | GCNGC | 3 cut(s) | 243, 505, 616 |
| FspBI | CTAG | 4 cut(s) | 511, 529, 544, 561 |
| GlaI | GCGC | 3 cut(s) | 151, 220, 246 |
| GluI | GCNGC | 3 cut(s) | 243, 505, 616 |
| GsuI | CTGGAG | 1 cut(s) | 430 |
| HaeIII | GGCC | 3 cut(s) | 355, 615, 651 |
| HgaI | GACGC | 1 cut(s) | 505 |
| HhaI | GCGC | 3 cut(s) | 152, 221, 247 |
| Hin1I | GRCGYC | 2 cut(s) | 272, 516 |
| Hin1II | CATG | 7 cut(s) | 48, 111, 121, 200, 387, 483, 594 |
| Hin6I | GCGC | 3 cut(s) | 150, 219, 245 |
| HinP1I | GCGC | 3 cut(s) | 150, 219, 245 |
| HinfI | GANTC | 5 cut(s) | 61, 84, 177, 492, 547 |
| HphI | GGTGA | 4 cut(s) | 216, 269, 329, 359 |
| Hpy188I | TCNGA | 3 cut(s) | 89, 94, 252 |
| Hpy188III | TCNNGA | 2 cut(s) | 81, 662 |
| HpyCH4III | ACNGT | 4 cut(s) | 228, 291, 314, 369 |
| HpyCH4IV | ACGT | 1 cut(s) | 272 |
| HpyCH4V | TGCA | 4 cut(s) | 361, 434, 507, 582 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 513 |
| HpyF3I | CTNAG | 1 cut(s) | 653 |
| HpySE526I | ACGT | 1 cut(s) | 272 |
| Hsp92I | GRCGYC | 2 cut(s) | 272, 516 |
| Hsp92II | CATG | 7 cut(s) | 48, 111, 121, 200, 387, 483, 594 |
| HspAI | GCGC | 3 cut(s) | 150, 219, 245 |
| Kzo9I | GATC | 4 cut(s) | 77, 89, 323, 557 |
| LguI | GCTCTTC | 1 cut(s) | 232 |
| LmnI | GCTCC | 3 cut(s) | 145, 449, 664 |
| Lsp1109I | GCAGC | 2 cut(s) | 254, 491 |
| LweI | GCATC | 2 cut(s) | 13, 256 |
| MaeI | CTAG | 4 cut(s) | 511, 529, 544, 561 |
| MaeII | ACGT | 1 cut(s) | 272 |
| MaeIII | GTNAC | 3 cut(s) | 5, 166, 399 |
| MalI | GATC | 5 cut(s) | 79, 91, 325, 559, 674 |
| MboI | GATC | 4 cut(s) | 77, 89, 323, 557 |
| MboII | GAAGA | 2 cut(s) | 249, 501 |
| MhlI | GDGCHC | 2 cut(s) | 37, 661 |
| MluCI | AATT | 2 cut(s) | 72, 276 |
| MlyI | GAGTC | 2 cut(s) | 171, 541 |
| MmeI | TCCRAC | 2 cut(s) | 275, 559 |
| MnlI | CCTC | 7 cut(s) | 13, 153, 196, 337, 380, 386, 662 |
| MspR9I | CCNGG | 1 cut(s) | 612 |
| MvaI | CCWGG | 1 cut(s) | 612 |
| MvnI | CGCG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 513 |
| NcoI | CCATGG | 3 cut(s) | 107, 117, 196 |
| NdeI | CATATG | 1 cut(s) | 155 |
| NdeII | GATC | 4 cut(s) | 77, 89, 323, 557 |
| NlaIII | CATG | 7 cut(s) | 48, 111, 121, 200, 387, 483, 594 |
| NlaIV | GGNNCC | 4 cut(s) | 184, 445, 609, 660 |
| NmuCI | GTSAC | 3 cut(s) | 5, 166, 399 |
| NspI | RCATGY | 1 cut(s) | 483 |
| PceI | AGGCCT | 2 cut(s) | 355, 651 |
| PciI | ACATGT | 1 cut(s) | 479 |
| PciSI | GCTCTTC | 1 cut(s) | 232 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 287 |
| PfeI | GAWTC | 3 cut(s) | 61, 84, 492 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 16, 159, 197, 389 |
| PkrI | GCNGC | 3 cut(s) | 244, 506, 617 |
| PleI | GAGTC | 2 cut(s) | 171, 541 |
| PpsI | GAGTC | 2 cut(s) | 171, 541 |
| PscI | ACATGT | 1 cut(s) | 479 |
| Psp6I | CCWGG | 1 cut(s) | 610 |
| PspGI | CCWGG | 1 cut(s) | 610 |
| PspN4I | GGNNCC | 4 cut(s) | 184, 445, 609, 660 |
| PspPI | GGNCC | 1 cut(s) | 114 |
| RsaI | GTAC | 2 cut(s) | 288, 478 |
| RsaNI | GTAC | 2 cut(s) | 287, 477 |
| SapI | GCTCTTC | 1 cut(s) | 232 |
| SatI | GCNGC | 3 cut(s) | 243, 505, 616 |
| Sau3AI | GATC | 4 cut(s) | 77, 89, 323, 557 |
| Sau96I | GGNCC | 1 cut(s) | 114 |
| SchI | GAGTC | 2 cut(s) | 171, 541 |
| ScrFI | CCNGG | 1 cut(s) | 612 |
| SduI | GDGCHC | 2 cut(s) | 37, 661 |
| SetI | ASST | 6 cut(s) | 275, 391, 406, 433, 590, 639 |
| SfaNI | GCATC | 2 cut(s) | 13, 256 |
| SinI | GGWCC | 1 cut(s) | 114 |
| SmlI | CTYRAG | 1 cut(s) | 597 |
| SmoI | CTYRAG | 1 cut(s) | 597 |
| Sse9I | AATT | 2 cut(s) | 72, 276 |
| SseBI | AGGCCT | 2 cut(s) | 355, 651 |
| SsiI | CCGC | 3 cut(s) | 112, 462, 616 |
| SspMI | CTAG | 4 cut(s) | 511, 529, 544, 561 |
| StuI | AGGCCT | 2 cut(s) | 355, 651 |
| StyD4I | CCNGG | 1 cut(s) | 610 |
| StyI | CCWWGG | 3 cut(s) | 107, 117, 196 |
| TaaI | ACNGT | 4 cut(s) | 228, 291, 314, 369 |
| TaiI | ACGT | 1 cut(s) | 275 |
| TaqI | TCGA | 2 cut(s) | 128, 175 |
| TasI | AATT | 2 cut(s) | 72, 276 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TauI | GCSGC | 1 cut(s) | 618 |
| TfiI | GAWTC | 3 cut(s) | 61, 84, 492 |
| TseFI | GTSAC | 3 cut(s) | 5, 166, 399 |
| TseI | GCWGC | 2 cut(s) | 242, 504 |
| Tsp45I | GTSAC | 3 cut(s) | 5, 166, 399 |
| TspDTI | ATGAA | 3 cut(s) | 53, 250, 368 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 16, 159, 197, 389 |
| VpaK11BI | GGWCC | 1 cut(s) | 114 |
| XceI | RCATGY | 1 cut(s) | 483 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 636 |
| XspI | CTAG | 4 cut(s) | 511, 529, 544, 561 |
| ZraI | GACGTC | 1 cut(s) | 273 |