Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 83, 245, 389 |
| AclWI | GGATC | 7 cut(s) | 76, 188, 222, 253, 266, 420, 433 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 435, 438, 478 |
| AgsI | TTSAA | 2 cut(s) | 154, 350 |
| AjnI | CCWGG | 2 cut(s) | 145, 362 |
| AluBI | AGCT | 1 cut(s) | 193 |
| AluI | AGCT | 1 cut(s) | 193 |
| Alw26I | GTCTC | 2 cut(s) | 26, 353 |
| AlwI | GGATC | 7 cut(s) | 76, 188, 222, 253, 266, 420, 433 |
| Ama87I | CYCGRG | 1 cut(s) | 54 |
| ApeKI | GCWGC | 2 cut(s) | 29, 80 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| AspS9I | GGNCC | 2 cut(s) | 128, 272 |
| AsuC2I | CCSGG | 2 cut(s) | 55, 56 |
| AvaI | CYCGRG | 1 cut(s) | 54 |
| AvaII | GGWCC | 2 cut(s) | 128, 272 |
| BaeGI | GKGCMC | 1 cut(s) | 161 |
| BamHI | GGATCC | 2 cut(s) | 258, 425 |
| BbvI | GCAGC | 2 cut(s) | 16, 92 |
| BccI | CCATC | 2 cut(s) | 99, 311 |
| BceAI | ACGGC | 1 cut(s) | 456 |
| BciT130I | CCWGG | 2 cut(s) | 147, 364 |
| BclI | TGATCA | 3 cut(s) | 97, 235, 454 |
| BcnI | CCSGG | 2 cut(s) | 55, 56 |
| BcoDI | GTCTC | 2 cut(s) | 26, 353 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfmI | CTRYAG | 1 cut(s) | 283 |
| BisI | GCNGC | 3 cut(s) | 30, 81, 84 |
| BlsI | GCNGC | 3 cut(s) | 31, 82, 85 |
| Bme1390I | CCNGG | 4 cut(s) | 55, 56, 147, 364 |
| Bme18I | GGWCC | 2 cut(s) | 128, 272 |
| BmeT110I | CYCGRG | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 2 cut(s) | 128, 272 |
| BmiI | GGNNCC | 2 cut(s) | 260, 427 |
| BmrFI | CCNGG | 4 cut(s) | 55, 56, 147, 364 |
| BpmI | CTGGAG | 1 cut(s) | 196 |
| BpuMI | CCSGG | 2 cut(s) | 55, 56 |
| BsaI | GGTCTC | 1 cut(s) | 353 |
| BsaJI | CCNNGG | 5 cut(s) | 54, 146, 275, 363, 411 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 435, 438, 478 |
| Bse1I | ACTGG | 3 cut(s) | 37, 107, 260 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| BseBI | CCWGG | 2 cut(s) | 147, 364 |
| BseDI | CCNNGG | 5 cut(s) | 54, 146, 275, 363, 411 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 435, 438, 478 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseNI | ACTGG | 3 cut(s) | 37, 107, 260 |
| BseSI | GKGCMC | 1 cut(s) | 161 |
| BseXI | GCAGC | 2 cut(s) | 16, 92 |
| BsiHKCI | CYCGRG | 1 cut(s) | 54 |
| BsiSI | CCGG | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 435, 438, 478 |
| BsmAI | GTCTC | 2 cut(s) | 26, 353 |
| Bso31I | GGTCTC | 1 cut(s) | 353 |
| BsoBI | CYCGRG | 1 cut(s) | 54 |
| Bsp1286I | GDGCHC | 1 cut(s) | 161 |
| Bsp143I | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| BspACI | CCGC | 3 cut(s) | 83, 245, 389 |
| BspHI | TCATGA | 1 cut(s) | 94 |
| BspLI | GGNNCC | 2 cut(s) | 260, 427 |
| BspPI | GGATC | 7 cut(s) | 76, 188, 222, 253, 266, 420, 433 |
| BspTNI | GGTCTC | 1 cut(s) | 353 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrI | ACTGG | 3 cut(s) | 37, 107, 260 |
| BssECI | CCNNGG | 5 cut(s) | 54, 146, 275, 363, 411 |
| BssMI | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| BssT1I | CCWWGG | 2 cut(s) | 275, 411 |
| Bst2UI | CCWGG | 2 cut(s) | 147, 364 |
| Bst4CI | ACNGT | 1 cut(s) | 463 |
| Bst6I | CTCTTC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 1 cut(s) | 467 |
| BstKTI | GATC | 8 cut(s) | 71, 100, 183, 217, 238, 261, 428, 457 |
| BstMAI | GTCTC | 2 cut(s) | 26, 353 |
| BstMBI | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 335 |
| BstNI | CCWGG | 2 cut(s) | 147, 364 |
| BstSCI | CCNGG | 4 cut(s) | 53, 54, 145, 362 |
| BstSFI | CTRYAG | 1 cut(s) | 283 |
| BstSLI | GKGCMC | 1 cut(s) | 161 |
| BstV1I | GCAGC | 2 cut(s) | 16, 92 |
| BstX2I | RGATCY | 2 cut(s) | 258, 425 |
| BstYI | RGATCY | 2 cut(s) | 258, 425 |
| BtsIMutI | CAGTG | 1 cut(s) | 100 |
| CciI | TCATGA | 1 cut(s) | 94 |
| Cfr13I | GGNCC | 2 cut(s) | 128, 272 |
| Cfr9I | CCCGGG | 1 cut(s) | 54 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 40, 75 |
| CviAII | CATG | 3 cut(s) | 95, 266, 295 |
| CviJI | RGCY | 6 cut(s) | 44, 86, 193, 338, 371, 471 |
| CviKI_1 | RGCY | 6 cut(s) | 44, 86, 193, 338, 371, 471 |
| DdeI | CTNAG | 1 cut(s) | 467 |
| DpnI | GATC | 8 cut(s) | 70, 99, 182, 216, 237, 260, 427, 456 |
| DpnII | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| Eam1104I | CTCTTC | 1 cut(s) | 351 |
| EarI | CTCTTC | 1 cut(s) | 351 |
| EciI | GGCGGA | 2 cut(s) | 260, 378 |
| Eco130I | CCWWGG | 2 cut(s) | 275, 411 |
| Eco31I | GGTCTC | 1 cut(s) | 353 |
| Eco47I | GGWCC | 2 cut(s) | 128, 272 |
| Eco88I | CYCGRG | 1 cut(s) | 54 |
| EcoRII | CCWGG | 2 cut(s) | 145, 362 |
| EcoT14I | CCWWGG | 2 cut(s) | 275, 411 |
| ErhI | CCWWGG | 2 cut(s) | 275, 411 |
| FaeI | CATG | 3 cut(s) | 98, 269, 298 |
| FaiI | YATR | 9 cut(s) | 65, 96, 110, 222, 267, 285, 296, 315, 446 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 395, 427 |
| FatI | CATG | 3 cut(s) | 94, 265, 294 |
| FbaI | TGATCA | 3 cut(s) | 97, 235, 454 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 81, 84 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 81, 84 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GluI | GCNGC | 3 cut(s) | 30, 81, 84 |
| GsuI | CTGGAG | 1 cut(s) | 196 |
| HapII | CCGG | 1 cut(s) | 55 |
| Hin1II | CATG | 3 cut(s) | 98, 269, 298 |
| HincII | GTYRAC | 1 cut(s) | 61 |
| HindII | GTYRAC | 1 cut(s) | 61 |
| HinfI | GANTC | 1 cut(s) | 47 |
| HpaII | CCGG | 1 cut(s) | 55 |
| Hpy166II | GTNNAC | 3 cut(s) | 61, 122, 272 |
| Hpy188I | TCNGA | 1 cut(s) | 132 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 175, 184, 203, 239 |
| Hpy8I | GTNNAC | 3 cut(s) | 61, 122, 272 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyCH4III | ACNGT | 1 cut(s) | 463 |
| HpyCH4V | TGCA | 1 cut(s) | 265 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 335 |
| HpyF3I | CTNAG | 1 cut(s) | 467 |
| Hsp92II | CATG | 3 cut(s) | 98, 269, 298 |
| Ksp22I | TGATCA | 3 cut(s) | 97, 235, 454 |
| Kzo9I | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 92 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MalI | GATC | 8 cut(s) | 70, 99, 182, 216, 237, 260, 427, 456 |
| MboI | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| MboII | GAAGA | 1 cut(s) | 338 |
| MflI | RGATCY | 2 cut(s) | 258, 425 |
| MhlI | GDGCHC | 1 cut(s) | 161 |
| MluCI | AATT | 1 cut(s) | 140 |
| MmeI | TCCRAC | 1 cut(s) | 403 |
| MnlI | CCTC | 7 cut(s) | 171, 235, 328, 354, 396, 439, 472 |
| MspA1I | CMGCKG | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 55 |
| MspR9I | CCNGG | 4 cut(s) | 55, 56, 147, 364 |
| MvaI | CCWGG | 2 cut(s) | 147, 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 335 |
| NciI | CCSGG | 2 cut(s) | 55, 56 |
| NdeII | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| NlaIII | CATG | 3 cut(s) | 98, 269, 298 |
| NlaIV | GGNNCC | 2 cut(s) | 260, 427 |
| PagI | TCATGA | 1 cut(s) | 94 |
| PfeI | GAWTC | 1 cut(s) | 47 |
| PkrI | GCNGC | 3 cut(s) | 31, 82, 85 |
| Psp6I | CCWGG | 2 cut(s) | 145, 362 |
| PspGI | CCWGG | 2 cut(s) | 145, 362 |
| PspN4I | GGNNCC | 2 cut(s) | 260, 427 |
| PspPI | GGNCC | 2 cut(s) | 128, 272 |
| PsuI | RGATCY | 2 cut(s) | 258, 425 |
| SatI | GCNGC | 3 cut(s) | 30, 81, 84 |
| Sau3AI | GATC | 8 cut(s) | 68, 97, 180, 214, 235, 258, 425, 454 |
| Sau96I | GGNCC | 2 cut(s) | 128, 272 |
| ScrFI | CCNGG | 4 cut(s) | 55, 56, 147, 364 |
| SduI | GDGCHC | 1 cut(s) | 161 |
| SetI | ASST | 6 cut(s) | 195, 277, 365, 388, 408, 453 |
| SfcI | CTRYAG | 1 cut(s) | 283 |
| SinI | GGWCC | 2 cut(s) | 128, 272 |
| SmaI | CCCGGG | 1 cut(s) | 56 |
| Sse9I | AATT | 1 cut(s) | 140 |
| SsiI | CCGC | 3 cut(s) | 83, 245, 389 |
| SspMI | CTAG | 1 cut(s) | 18 |
| StyD4I | CCNGG | 4 cut(s) | 53, 54, 145, 362 |
| StyI | CCWWGG | 2 cut(s) | 275, 411 |
| TaaI | ACNGT | 1 cut(s) | 463 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TasI | AATT | 1 cut(s) | 140 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TfiI | GAWTC | 1 cut(s) | 47 |
| TscAI | CASTG | 1 cut(s) | 107 |
| TseI | GCWGC | 2 cut(s) | 29, 80 |
| TspGWI | ACGGA | 1 cut(s) | 89 |
| TspMI | CCCGGG | 1 cut(s) | 54 |
| TspRI | CASTG | 1 cut(s) | 107 |
| VpaK11BI | GGWCC | 2 cut(s) | 128, 272 |
| XapI | RAATTY | 1 cut(s) | 140 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XmaI | CCCGGG | 1 cut(s) | 54 |
| XspI | CTAG | 1 cut(s) | 18 |