Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 35 |
| AciI | CCGC | 3 cut(s) | 77, 321, 405 |
| AclWI | GGATC | 1 cut(s) | 139 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AcsI | RAATTY | 1 cut(s) | 382 |
| AfaI | GTAC | 1 cut(s) | 235 |
| AlwI | GGATC | 1 cut(s) | 139 |
| Ama87I | CYCGRG | 1 cut(s) | 343 |
| AoxI | GGCC | 3 cut(s) | 339, 393, 412 |
| ApeKI | GCWGC | 2 cut(s) | 4, 268 |
| ApoI | RAATTY | 1 cut(s) | 382 |
| AspLEI | GCGC | 1 cut(s) | 35 |
| AspS9I | GGNCC | 1 cut(s) | 393 |
| AsuII | TTCGAA | 1 cut(s) | 103 |
| AvaI | CYCGRG | 1 cut(s) | 343 |
| BaeGI | GKGCMC | 1 cut(s) | 232 |
| BbvI | GCAGC | 1 cut(s) | 280 |
| BccI | CCATC | 4 cut(s) | 17, 55, 347, 404 |
| BceAI | ACGGC | 1 cut(s) | 122 |
| BciVI | GTATCC | 1 cut(s) | 208 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BfuI | GTATCC | 1 cut(s) | 208 |
| BglII | AGATCT | 1 cut(s) | 66 |
| BisI | GCNGC | 4 cut(s) | 5, 269, 322, 406 |
| BlsI | GCNGC | 4 cut(s) | 6, 270, 323, 407 |
| BmeT110I | CYCGRG | 1 cut(s) | 343 |
| BmgT120I | GGNCC | 1 cut(s) | 393 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmsI | GCATC | 2 cut(s) | 231, 355 |
| Bpu14I | TTCGAA | 1 cut(s) | 103 |
| BsaAI | YACGTR | 1 cut(s) | 233 |
| BsaBI | GATNNNNATC | 2 cut(s) | 65, 281 |
| BsaJI | CCNNGG | 2 cut(s) | 261, 342 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 217, 247 |
| Bse118I | RCCGGY | 1 cut(s) | 414 |
| Bse8I | GATNNNNATC | 2 cut(s) | 65, 281 |
| BseDI | CCNNGG | 2 cut(s) | 261, 342 |
| BseGI | GGATG | 1 cut(s) | 246 |
| BseJI | GATNNNNATC | 2 cut(s) | 65, 281 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BseRI | GAGGAG | 2 cut(s) | 200, 203 |
| BseSI | GKGCMC | 1 cut(s) | 232 |
| BseXI | GCAGC | 1 cut(s) | 280 |
| BsgI | GTGCAG | 1 cut(s) | 287 |
| Bsh1236I | CGCG | 1 cut(s) | 35 |
| BshFI | GGCC | 3 cut(s) | 341, 395, 414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 343 |
| BsiSI | CCGG | 1 cut(s) | 415 |
| BsnI | GGCC | 3 cut(s) | 341, 395, 414 |
| BsoBI | CYCGRG | 1 cut(s) | 343 |
| Bsp119I | TTCGAA | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 1 cut(s) | 232 |
| Bsp143I | GATC | 3 cut(s) | 66, 131, 160 |
| BspACI | CCGC | 3 cut(s) | 77, 321, 405 |
| BspANI | GGCC | 3 cut(s) | 341, 395, 414 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspFNI | CGCG | 1 cut(s) | 35 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 139 |
| BspQI | GCTCTTC | 1 cut(s) | 177 |
| BspT104I | TTCGAA | 1 cut(s) | 103 |
| BsrFI | RCCGGY | 1 cut(s) | 414 |
| BssAI | RCCGGY | 1 cut(s) | 414 |
| BssECI | CCNNGG | 2 cut(s) | 261, 342 |
| BssMI | GATC | 3 cut(s) | 66, 131, 160 |
| Bst4CI | ACNGT | 1 cut(s) | 265 |
| Bst6I | CTCTTC | 1 cut(s) | 177 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 318 |
| BstBAI | YACGTR | 1 cut(s) | 233 |
| BstBI | TTCGAA | 1 cut(s) | 103 |
| BstC8I | GCNNGC | 1 cut(s) | 114 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstDSI | CCRYGG | 1 cut(s) | 261 |
| BstF5I | GGATG | 1 cut(s) | 246 |
| BstFNI | CGCG | 1 cut(s) | 35 |
| BstHHI | GCGC | 1 cut(s) | 35 |
| BstKTI | GATC | 3 cut(s) | 69, 134, 163 |
| BstMBI | GATC | 3 cut(s) | 66, 131, 160 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 318, 411 |
| BstNSI | RCATGY | 1 cut(s) | 116 |
| BstSLI | GKGCMC | 1 cut(s) | 232 |
| BstUI | CGCG | 1 cut(s) | 35 |
| BstV1I | GCAGC | 1 cut(s) | 280 |
| BstX2I | RGATCY | 2 cut(s) | 66, 131 |
| BstYI | RGATCY | 2 cut(s) | 66, 131 |
| BsuI | GTATCC | 1 cut(s) | 208 |
| BsuRI | GGCC | 3 cut(s) | 341, 395, 414 |
| BtgI | CCRYGG | 1 cut(s) | 261 |
| BtgZI | GCGATG | 1 cut(s) | 423 |
| BtsCI | GGATG | 1 cut(s) | 246 |
| Cac8I | GCNNGC | 1 cut(s) | 114 |
| CfoI | GCGC | 1 cut(s) | 35 |
| Cfr10I | RCCGGY | 1 cut(s) | 414 |
| Cfr13I | GGNCC | 1 cut(s) | 393 |
| Csp6I | GTAC | 1 cut(s) | 234 |
| CviAII | CATG | 2 cut(s) | 113, 335 |
| CviJI | RGCY | 6 cut(s) | 170, 271, 324, 341, 395, 414 |
| CviKI_1 | RGCY | 6 cut(s) | 170, 271, 324, 341, 395, 414 |
| CviQI | GTAC | 1 cut(s) | 234 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| DpnI | GATC | 3 cut(s) | 68, 133, 162 |
| DpnII | GATC | 3 cut(s) | 66, 131, 160 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 1 cut(s) | 177 |
| EarI | CTCTTC | 1 cut(s) | 177 |
| Eco147I | AGGCCT | 1 cut(s) | 341 |
| Eco88I | CYCGRG | 1 cut(s) | 343 |
| FaeI | CATG | 2 cut(s) | 116, 338 |
| FaiI | YATR | 5 cut(s) | 21, 114, 291, 310, 336 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 101, 133 |
| FatI | CATG | 2 cut(s) | 112, 334 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 269, 322, 406 |
| FokI | GGATG | 1 cut(s) | 253 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 269, 322, 406 |
| GlaI | GCGC | 1 cut(s) | 34 |
| GluI | GCNGC | 4 cut(s) | 5, 269, 322, 406 |
| HaeIII | GGCC | 3 cut(s) | 341, 395, 414 |
| HapII | CCGG | 1 cut(s) | 415 |
| HhaI | GCGC | 1 cut(s) | 35 |
| Hin1II | CATG | 2 cut(s) | 116, 338 |
| Hin6I | GCGC | 1 cut(s) | 33 |
| HinP1I | GCGC | 1 cut(s) | 33 |
| HinfI | GANTC | 1 cut(s) | 198 |
| HpaII | CCGG | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 3 cut(s) | 203, 225, 388 |
| Hpy188III | TCNNGA | 2 cut(s) | 70, 447 |
| Hpy99I | CGWCG | 2 cut(s) | 143, 225 |
| HpyAV | CCTTC | 1 cut(s) | 368 |
| HpyCH4III | ACNGT | 1 cut(s) | 265 |
| HpyCH4IV | ACGT | 1 cut(s) | 232 |
| HpyCH4V | TGCA | 3 cut(s) | 268, 312, 368 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 318, 411 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| HpySE526I | ACGT | 1 cut(s) | 232 |
| Hsp92II | CATG | 2 cut(s) | 116, 338 |
| HspAI | GCGC | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 3 cut(s) | 66, 131, 160 |
| LguI | GCTCTTC | 1 cut(s) | 177 |
| LmnI | GCTCC | 1 cut(s) | 190 |
| LpnPI | CCDG | 5 cut(s) | 55, 131, 285, 298, 428 |
| Lsp1109I | GCAGC | 1 cut(s) | 280 |
| LweI | GCATC | 2 cut(s) | 231, 355 |
| MaeII | ACGT | 1 cut(s) | 232 |
| MalI | GATC | 3 cut(s) | 68, 133, 162 |
| MboI | GATC | 3 cut(s) | 66, 131, 160 |
| MboII | GAAGA | 1 cut(s) | 164 |
| MfeI | CAATTG | 1 cut(s) | 164 |
| MflI | RGATCY | 2 cut(s) | 66, 131 |
| MhlI | GDGCHC | 1 cut(s) | 232 |
| MluCI | AATT | 3 cut(s) | 126, 164, 382 |
| MmeI | TCCRAC | 4 cut(s) | 18, 192, 203, 406 |
| MnlI | CCTC | 6 cut(s) | 36, 178, 181, 219, 331, 352 |
| MseI | TTAA | 2 cut(s) | 119, 300 |
| MspI | CCGG | 1 cut(s) | 415 |
| MunI | CAATTG | 1 cut(s) | 164 |
| MvnI | CGCG | 1 cut(s) | 35 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 318, 411 |
| NdeII | GATC | 3 cut(s) | 66, 131, 160 |
| NlaIII | CATG | 2 cut(s) | 116, 338 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| NspI | RCATGY | 1 cut(s) | 116 |
| NspV | TTCGAA | 1 cut(s) | 103 |
| PaeI | GCATGC | 1 cut(s) | 116 |
| PceI | AGGCCT | 1 cut(s) | 341 |
| PciSI | GCTCTTC | 1 cut(s) | 177 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 229 |
| PfeI | GAWTC | 1 cut(s) | 198 |
| PkrI | GCNGC | 4 cut(s) | 6, 270, 323, 407 |
| Ppu21I | YACGTR | 1 cut(s) | 233 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PspPI | GGNCC | 1 cut(s) | 393 |
| PsuI | RGATCY | 2 cut(s) | 66, 131 |
| RsaI | GTAC | 1 cut(s) | 235 |
| RsaNI | GTAC | 1 cut(s) | 234 |
| SapI | GCTCTTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 119, 300 |
| SatI | GCNGC | 4 cut(s) | 5, 269, 322, 406 |
| Sau3AI | GATC | 3 cut(s) | 66, 131, 160 |
| Sau96I | GGNCC | 1 cut(s) | 393 |
| SduI | GDGCHC | 1 cut(s) | 232 |
| SetI | ASST | 3 cut(s) | 88, 150, 235 |
| SfaNI | GCATC | 2 cut(s) | 231, 355 |
| SfuI | TTCGAA | 1 cut(s) | 103 |
| SphI | GCATGC | 1 cut(s) | 116 |
| Sse9I | AATT | 3 cut(s) | 126, 164, 382 |
| SseBI | AGGCCT | 1 cut(s) | 341 |
| SsiI | CCGC | 3 cut(s) | 77, 321, 405 |
| StuI | AGGCCT | 1 cut(s) | 341 |
| TaaI | ACNGT | 1 cut(s) | 265 |
| TaiI | ACGT | 1 cut(s) | 235 |
| TaqI | TCGA | 2 cut(s) | 103, 249 |
| TaqII | GACCGA | 1 cut(s) | 131 |
| TasI | AATT | 3 cut(s) | 126, 164, 382 |
| TauI | GCSGC | 2 cut(s) | 324, 408 |
| TfiI | GAWTC | 1 cut(s) | 198 |
| Tru1I | TTAA | 2 cut(s) | 119, 300 |
| Tru9I | TTAA | 2 cut(s) | 119, 300 |
| TseI | GCWGC | 2 cut(s) | 4, 268 |
| XapI | RAATTY | 1 cut(s) | 382 |
| XceI | RCATGY | 1 cut(s) | 116 |