Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF3783 | PF12646 | 143 - 197 | 1.4e-17 | Domain of unknown function (DUF3783) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 247 |
| Acc36I | ACCTGC | 1 cut(s) | 247 |
| AciI | CCGC | 1 cut(s) | 419 |
| AcsI | RAATTY | 2 cut(s) | 28, 197 |
| AcuI | CTGAAG | 3 cut(s) | 39, 183, 360 |
| AfaI | GTAC | 2 cut(s) | 285, 337 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 494 |
| AgsI | TTSAA | 5 cut(s) | 67, 93, 133, 263, 503 |
| AluBI | AGCT | 5 cut(s) | 80, 136, 275, 509, 521 |
| AluI | AGCT | 5 cut(s) | 80, 136, 275, 509, 521 |
| Alw26I | GTCTC | 1 cut(s) | 485 |
| AoxI | GGCC | 1 cut(s) | 232 |
| ApeKI | GCWGC | 3 cut(s) | 275, 421, 518 |
| ApoI | RAATTY | 2 cut(s) | 28, 197 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 2 cut(s) | 138, 323 |
| AsuNHI | GCTAGC | 1 cut(s) | 76 |
| BbsI | GAAGAC | 1 cut(s) | 348 |
| BbvI | GCAGC | 3 cut(s) | 262, 408, 530 |
| BccI | CCATC | 1 cut(s) | 132 |
| BclI | TGATCA | 1 cut(s) | 348 |
| BcoDI | GTCTC | 1 cut(s) | 485 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BfuAI | ACCTGC | 1 cut(s) | 247 |
| BisI | GCNGC | 4 cut(s) | 276, 419, 422, 519 |
| BlpI | GCTNAGC | 1 cut(s) | 414 |
| BlsI | GCNGC | 4 cut(s) | 277, 420, 423, 520 |
| BmgT120I | GGNCC | 1 cut(s) | 233 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmrI | ACTGGG | 1 cut(s) | 168 |
| BmsI | GCATC | 1 cut(s) | 14 |
| BmtI | GCTAGC | 1 cut(s) | 80 |
| BmuI | ACTGGG | 1 cut(s) | 168 |
| BpiI | GAAGAC | 1 cut(s) | 348 |
| BpmI | CTGGAG | 1 cut(s) | 287 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 2 cut(s) | 122, 305 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 494 |
| Bse1I | ACTGG | 2 cut(s) | 174, 270 |
| Bse3DI | GCAATG | 1 cut(s) | 378 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 494 |
| BseMI | GCAATG | 1 cut(s) | 378 |
| BseMII | CTCAG | 2 cut(s) | 405, 531 |
| BseNI | ACTGG | 2 cut(s) | 174, 270 |
| BseRI | GAGGAG | 1 cut(s) | 569 |
| BseXI | GCAGC | 3 cut(s) | 262, 408, 530 |
| BshFI | GGCC | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 494 |
| BsmAI | GTCTC | 1 cut(s) | 485 |
| BsnI | GGCC | 1 cut(s) | 234 |
| Bsp143I | GATC | 2 cut(s) | 348, 580 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 414 |
| BspACI | CCGC | 1 cut(s) | 419 |
| BspANI | GGCC | 1 cut(s) | 234 |
| BspCNI | CTCAG | 2 cut(s) | 406, 532 |
| BspHI | TCATGA | 1 cut(s) | 583 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BspMI | ACCTGC | 1 cut(s) | 247 |
| BspOI | GCTAGC | 1 cut(s) | 80 |
| BsrDI | GCAATG | 1 cut(s) | 378 |
| BsrI | ACTGG | 2 cut(s) | 174, 270 |
| BssMI | GATC | 2 cut(s) | 348, 580 |
| Bst4CI | ACNGT | 3 cut(s) | 97, 283, 536 |
| Bst6I | CTCTTC | 2 cut(s) | 453, 603 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstDEI | CTNAG | 3 cut(s) | 414, 449, 540 |
| BstKTI | GATC | 2 cut(s) | 351, 583 |
| BstMAI | GTCTC | 1 cut(s) | 485 |
| BstMBI | GATC | 2 cut(s) | 348, 580 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 515 |
| BstV1I | GCAGC | 3 cut(s) | 262, 408, 530 |
| BstV2I | GAAGAC | 1 cut(s) | 348 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 604 |
| BsuRI | GGCC | 1 cut(s) | 234 |
| BtsIMutI | CAGTG | 2 cut(s) | 181, 541 |
| BveI | ACCTGC | 1 cut(s) | 247 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CciI | TCATGA | 1 cut(s) | 583 |
| Cfr13I | GGNCC | 1 cut(s) | 233 |
| CseI | GACGC | 1 cut(s) | 144 |
| Csp6I | GTAC | 2 cut(s) | 284, 336 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 225, 260 |
| CviAII | CATG | 2 cut(s) | 346, 584 |
| CviJI | RGCY | 8 cut(s) | 80, 136, 234, 258, 275, 418, 509, 521 |
| CviKI_1 | RGCY | 8 cut(s) | 80, 136, 234, 258, 275, 418, 509, 521 |
| CviQI | GTAC | 2 cut(s) | 284, 336 |
| DdeI | CTNAG | 3 cut(s) | 414, 449, 540 |
| DpnI | GATC | 2 cut(s) | 350, 582 |
| DpnII | GATC | 2 cut(s) | 348, 580 |
| Eam1104I | CTCTTC | 2 cut(s) | 453, 603 |
| EarI | CTCTTC | 2 cut(s) | 453, 603 |
| Eco57I | CTGAAG | 3 cut(s) | 39, 183, 360 |
| EcoRI | GAATTC | 1 cut(s) | 28 |
| FaeI | CATG | 2 cut(s) | 349, 587 |
| FaiI | YATR | 6 cut(s) | 87, 224, 347, 575, 585, 617 |
| FatI | CATG | 2 cut(s) | 345, 583 |
| FbaI | TGATCA | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 4 cut(s) | 276, 419, 422, 519 |
| Fsp4HI | GCNGC | 4 cut(s) | 276, 419, 422, 519 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GluI | GCNGC | 4 cut(s) | 276, 419, 422, 519 |
| GsuI | CTGGAG | 1 cut(s) | 287 |
| HaeIII | GGCC | 1 cut(s) | 234 |
| HgaI | GACGC | 1 cut(s) | 144 |
| Hin1II | CATG | 2 cut(s) | 349, 587 |
| HinfI | GANTC | 3 cut(s) | 67, 191, 429 |
| HphI | GGTGA | 2 cut(s) | 138, 323 |
| Hpy166II | GTNNAC | 1 cut(s) | 359 |
| Hpy188I | TCNGA | 3 cut(s) | 27, 297, 628 |
| Hpy188III | TCNNGA | 2 cut(s) | 488, 584 |
| Hpy8I | GTNNAC | 1 cut(s) | 359 |
| Hpy99I | CGWCG | 1 cut(s) | 283 |
| HpyAV | CCTTC | 3 cut(s) | 28, 63, 158 |
| HpyCH4III | ACNGT | 3 cut(s) | 97, 283, 536 |
| HpyCH4V | TGCA | 1 cut(s) | 518 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 515 |
| HpyF3I | CTNAG | 3 cut(s) | 414, 449, 540 |
| Hsp92II | CATG | 2 cut(s) | 349, 587 |
| Ksp22I | TGATCA | 1 cut(s) | 348 |
| Kzo9I | GATC | 2 cut(s) | 348, 580 |
| LmnI | GCTCC | 1 cut(s) | 85 |
| LpnPI | CCDG | 8 cut(s) | 163, 187, 251, 252, 429, 480, 501, 519 |
| Lsp1109I | GCAGC | 3 cut(s) | 262, 408, 530 |
| LweI | GCATC | 1 cut(s) | 14 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MalI | GATC | 2 cut(s) | 350, 582 |
| MboI | GATC | 2 cut(s) | 348, 580 |
| MboII | GAAGA | 6 cut(s) | 93, 200, 353, 418, 470, 620 |
| MluCI | AATT | 4 cut(s) | 28, 179, 197, 391 |
| MmeI | TCCRAC | 1 cut(s) | 409 |
| MnlI | CCTC | 7 cut(s) | 60, 262, 302, 329, 391, 547, 604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 168 |
| MseI | TTAA | 1 cut(s) | 210 |
| MspA1I | CMGCKG | 2 cut(s) | 421, 509 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 515 |
| NdeII | GATC | 2 cut(s) | 348, 580 |
| NheI | GCTAGC | 1 cut(s) | 76 |
| NlaIII | CATG | 2 cut(s) | 349, 587 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| PagI | TCATGA | 1 cut(s) | 583 |
| PaqCI | CACCTGC | 1 cut(s) | 247 |
| PdmI | GAANNNNTTC | 1 cut(s) | 168 |
| PfeI | GAWTC | 3 cut(s) | 67, 191, 429 |
| PkrI | GCNGC | 4 cut(s) | 277, 420, 423, 520 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PspPI | GGNCC | 1 cut(s) | 233 |
| PvuII | CAGCTG | 1 cut(s) | 509 |
| RsaI | GTAC | 2 cut(s) | 285, 337 |
| RsaNI | GTAC | 2 cut(s) | 284, 336 |
| SaqAI | TTAA | 1 cut(s) | 210 |
| SatI | GCNGC | 4 cut(s) | 276, 419, 422, 519 |
| Sau3AI | GATC | 2 cut(s) | 348, 580 |
| Sau96I | GGNCC | 1 cut(s) | 233 |
| SetI | ASST | 8 cut(s) | 82, 138, 241, 277, 313, 327, 511, 523 |
| SfaNI | GCATC | 1 cut(s) | 14 |
| SmlI | CTYRAG | 2 cut(s) | 137, 320 |
| SmoI | CTYRAG | 2 cut(s) | 137, 320 |
| Sse9I | AATT | 4 cut(s) | 28, 179, 197, 391 |
| SsiI | CCGC | 1 cut(s) | 419 |
| SspMI | CTAG | 1 cut(s) | 77 |
| TaaI | ACNGT | 3 cut(s) | 97, 283, 536 |
| TasI | AATT | 4 cut(s) | 28, 179, 197, 391 |
| TatI | WGTACW | 1 cut(s) | 335 |
| TauI | GCSGC | 1 cut(s) | 421 |
| TfiI | GAWTC | 3 cut(s) | 67, 191, 429 |
| Tru1I | TTAA | 1 cut(s) | 210 |
| Tru9I | TTAA | 1 cut(s) | 210 |
| TscAI | CASTG | 2 cut(s) | 181, 541 |
| TseI | GCWGC | 3 cut(s) | 275, 421, 518 |
| TspDTI | ATGAA | 3 cut(s) | 93, 389, 600 |
| TspRI | CASTG | 2 cut(s) | 181, 541 |
| XapI | RAATTY | 2 cut(s) | 28, 197 |
| XmnI | GAANNNNTTC | 1 cut(s) | 168 |
| XspI | CTAG | 1 cut(s) | 77 |