Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 919 |
| AccI | GTMKAC | 1 cut(s) | 210 |
| AccII | CGCG | 1 cut(s) | 408 |
| AciI | CCGC | 6 cut(s) | 330, 336, 406, 408, 609, 849 |
| AclWI | GGATC | 1 cut(s) | 491 |
| AcsI | RAATTY | 1 cut(s) | 752 |
| AcvI | CACGTG | 1 cut(s) | 324 |
| AfaI | GTAC | 3 cut(s) | 284, 703, 846 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 742, 919 |
| AflIII | ACRYGT | 2 cut(s) | 321, 323 |
| AgsI | TTSAA | 4 cut(s) | 28, 421, 690, 802 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| AluBI | AGCT | 4 cut(s) | 155, 273, 553, 887 |
| AluI | AGCT | 4 cut(s) | 155, 273, 553, 887 |
| Alw21I | GWGCWC | 3 cut(s) | 157, 966, 1050 |
| Alw26I | GTCTC | 1 cut(s) | 539 |
| Alw44I | GTGCAC | 1 cut(s) | 1046 |
| AlwI | GGATC | 1 cut(s) | 491 |
| ApaLI | GTGCAC | 1 cut(s) | 1046 |
| ApoI | RAATTY | 1 cut(s) | 752 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 184, 216 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 938 |
| AsuHPI | GGTGA | 2 cut(s) | 42, 506 |
| AxyI | CCTNAGG | 1 cut(s) | 929 |
| BaeGI | GKGCMC | 1 cut(s) | 1050 |
| BanII | GRGCYC | 1 cut(s) | 157 |
| BbrPI | CACGTG | 1 cut(s) | 324 |
| Bbv12I | GWGCWC | 3 cut(s) | 157, 966, 1050 |
| BccI | CCATC | 3 cut(s) | 485, 535, 674 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BcoDI | GTCTC | 1 cut(s) | 539 |
| BfaI | CTAG | 1 cut(s) | 699 |
| Bme1390I | CCNGG | 1 cut(s) | 95 |
| BmrFI | CCNGG | 1 cut(s) | 95 |
| BmsI | GCATC | 1 cut(s) | 913 |
| BoxI | GACNNNNGTC | 1 cut(s) | 297 |
| BpmI | CTGGAG | 3 cut(s) | 375, 719, 867 |
| BpuEI | CTTGAG | 1 cut(s) | 980 |
| BsaAI | YACGTR | 1 cut(s) | 324 |
| BsaBI | GATNNNNATC | 1 cut(s) | 495 |
| BsaJI | CCNNGG | 1 cut(s) | 406 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 742, 919 |
| Bse1I | ACTGG | 4 cut(s) | 181, 358, 736, 820 |
| Bse21I | CCTNAGG | 1 cut(s) | 929 |
| Bse3DI | GCAATG | 1 cut(s) | 439 |
| Bse8I | GATNNNNATC | 1 cut(s) | 495 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 1 cut(s) | 406 |
| BseGI | GGATG | 4 cut(s) | 211, 373, 496, 928 |
| BseJI | GATNNNNATC | 1 cut(s) | 495 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 742, 919 |
| BseMI | GCAATG | 1 cut(s) | 439 |
| BseMII | CTCAG | 5 cut(s) | 293, 521, 540, 920, 983 |
| BseNI | ACTGG | 4 cut(s) | 181, 358, 736, 820 |
| BseRI | GAGGAG | 1 cut(s) | 480 |
| BseSI | GKGCMC | 1 cut(s) | 1050 |
| BsgI | GTGCAG | 2 cut(s) | 302, 693 |
| Bsh1236I | CGCG | 1 cut(s) | 408 |
| BsiHKAI | GWGCWC | 3 cut(s) | 157, 966, 1050 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 742, 919 |
| BsmAI | GTCTC | 1 cut(s) | 539 |
| BsmI | GAATGC | 1 cut(s) | 977 |
| Bsp1286I | GDGCHC | 3 cut(s) | 157, 966, 1050 |
| Bsp143I | GATC | 2 cut(s) | 12, 496 |
| BspACI | CCGC | 6 cut(s) | 330, 336, 406, 408, 609, 849 |
| BspCNI | CTCAG | 5 cut(s) | 292, 520, 541, 921, 982 |
| BspFNI | CGCG | 1 cut(s) | 408 |
| BspPI | GGATC | 1 cut(s) | 491 |
| BspQI | GCTCTTC | 1 cut(s) | 145 |
| BsrDI | GCAATG | 1 cut(s) | 439 |
| BsrI | ACTGG | 4 cut(s) | 181, 358, 736, 820 |
| BssECI | CCNNGG | 1 cut(s) | 406 |
| BssMI | GATC | 2 cut(s) | 12, 496 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 2 cut(s) | 235, 250 |
| Bst6I | CTCTTC | 4 cut(s) | 40, 145, 260, 357 |
| BstBAI | YACGTR | 1 cut(s) | 324 |
| BstC8I | GCNNGC | 1 cut(s) | 334 |
| BstDEI | CTNAG | 5 cut(s) | 279, 507, 549, 929, 969 |
| BstDSI | CCRYGG | 1 cut(s) | 406 |
| BstF5I | GGATG | 4 cut(s) | 211, 373, 496, 928 |
| BstFNI | CGCG | 1 cut(s) | 408 |
| BstKTI | GATC | 2 cut(s) | 15, 499 |
| BstMAI | GTCTC | 1 cut(s) | 539 |
| BstMBI | GATC | 2 cut(s) | 12, 496 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 785, 848, 1004 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstNSI | RCATGY | 1 cut(s) | 336 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 297 |
| BstSCI | CCNGG | 1 cut(s) | 93 |
| BstSLI | GKGCMC | 1 cut(s) | 1050 |
| BstUI | CGCG | 1 cut(s) | 408 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 171 |
| Bsu36I | CCTNAGG | 1 cut(s) | 929 |
| BtgI | CCRYGG | 1 cut(s) | 406 |
| BtsCI | GGATG | 4 cut(s) | 211, 373, 496, 928 |
| BtsI | GCAGTG | 2 cut(s) | 565, 1036 |
| BtsIMutI | CAGTG | 5 cut(s) | 22, 255, 565, 813, 1036 |
| Cac8I | GCNNGC | 1 cut(s) | 334 |
| Cfr42I | CCGCGG | 1 cut(s) | 409 |
| Csp6I | GTAC | 3 cut(s) | 283, 702, 845 |
| CviAII | CATG | 3 cut(s) | 333, 343, 946 |
| CviQI | GTAC | 3 cut(s) | 283, 702, 845 |
| DdeI | CTNAG | 5 cut(s) | 279, 507, 549, 929, 969 |
| DpnI | GATC | 2 cut(s) | 14, 498 |
| DpnII | GATC | 2 cut(s) | 12, 496 |
| Eam1104I | CTCTTC | 4 cut(s) | 40, 145, 260, 357 |
| EarI | CTCTTC | 4 cut(s) | 40, 145, 260, 357 |
| Ecl136II | GAGCTC | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 157 |
| Eco53kI | GAGCTC | 1 cut(s) | 155 |
| Eco72I | CACGTG | 1 cut(s) | 324 |
| Eco81I | CCTNAGG | 1 cut(s) | 929 |
| EcoICRI | GAGCTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT38I | GRGCYC | 1 cut(s) | 157 |
| FaeI | CATG | 3 cut(s) | 336, 346, 949 |
| FatI | CATG | 3 cut(s) | 332, 342, 945 |
| FauI | CCCGC | 2 cut(s) | 413, 856 |
| FauNDI | CATATG | 1 cut(s) | 107 |
| FblI | GTMKAC | 1 cut(s) | 210 |
| FokI | GGATG | 4 cut(s) | 218, 380, 503, 935 |
| FriOI | GRGCYC | 1 cut(s) | 157 |
| FspBI | CTAG | 1 cut(s) | 699 |
| GsuI | CTGGAG | 3 cut(s) | 375, 719, 867 |
| Hin1II | CATG | 3 cut(s) | 336, 346, 949 |
| HincII | GTYRAC | 2 cut(s) | 211, 726 |
| HindII | GTYRAC | 2 cut(s) | 211, 726 |
| HinfI | GANTC | 5 cut(s) | 212, 227, 339, 475, 568 |
| HpaI | GTTAAC | 1 cut(s) | 726 |
| HphI | GGTGA | 2 cut(s) | 42, 506 |
| Hpy166II | GTNNAC | 4 cut(s) | 211, 726, 1034, 1048 |
| Hpy188I | TCNGA | 5 cut(s) | 205, 307, 474, 510, 630 |
| Hpy188III | TCNNGA | 1 cut(s) | 791 |
| Hpy8I | GTNNAC | 4 cut(s) | 211, 726, 1034, 1048 |
| Hpy99I | CGWCG | 3 cut(s) | 86, 89, 92 |
| HpyAV | CCTTC | 3 cut(s) | 31, 367, 792 |
| HpyCH4III | ACNGT | 2 cut(s) | 235, 250 |
| HpyCH4IV | ACGT | 1 cut(s) | 323 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 319, 432, 674, 945, 1048 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 785, 848, 1004 |
| HpyF3I | CTNAG | 5 cut(s) | 279, 507, 549, 929, 969 |
| HpySE526I | ACGT | 1 cut(s) | 323 |
| Hsp92II | CATG | 3 cut(s) | 336, 346, 949 |
| KspAI | GTTAAC | 1 cut(s) | 726 |
| KspI | CCGCGG | 1 cut(s) | 409 |
| Kzo9I | GATC | 2 cut(s) | 12, 496 |
| LguI | GCTCTTC | 1 cut(s) | 145 |
| LmnI | GCTCC | 2 cut(s) | 160, 793 |
| LweI | GCATC | 1 cut(s) | 913 |
| MaeI | CTAG | 1 cut(s) | 699 |
| MaeII | ACGT | 1 cut(s) | 323 |
| MaeIII | GTNAC | 4 cut(s) | 250, 349, 532, 877 |
| MalI | GATC | 2 cut(s) | 14, 498 |
| MboI | GATC | 2 cut(s) | 12, 496 |
| MboII | GAAGA | 9 cut(s) | 16, 27, 30, 33, 162, 277, 305, 374, 906 |
| MhlI | GDGCHC | 3 cut(s) | 157, 966, 1050 |
| MluCI | AATT | 6 cut(s) | 98, 131, 416, 615, 752, 1018 |
| MlyI | GAGTC | 2 cut(s) | 206, 348 |
| MmeI | TCCRAC | 3 cut(s) | 442, 452, 468 |
| MnlI | CCTC | 9 cut(s) | 43, 81, 358, 432, 458, 461, 504, 510, 924 |
| MroXI | GAANNNNTTC | 1 cut(s) | 938 |
| MseI | TTAA | 3 cut(s) | 456, 585, 725 |
| MslI | CAYNNNNRTG | 1 cut(s) | 347 |
| MspA1I | CMGCKG | 2 cut(s) | 408, 851 |
| MspR9I | CCNGG | 1 cut(s) | 95 |
| Mva1269I | GAATGC | 1 cut(s) | 977 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| MvnI | CGCG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 785, 848, 1004 |
| NdeI | CATATG | 1 cut(s) | 107 |
| NdeII | GATC | 2 cut(s) | 12, 496 |
| NlaIII | CATG | 3 cut(s) | 336, 346, 949 |
| NmuCI | GTSAC | 4 cut(s) | 250, 349, 532, 877 |
| NspI | RCATGY | 1 cut(s) | 336 |
| PaeI | GCATGC | 1 cut(s) | 336 |
| PciSI | GCTCTTC | 1 cut(s) | 145 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PctI | GAATGC | 1 cut(s) | 977 |
| PdmI | GAANNNNTTC | 1 cut(s) | 938 |
| PfeI | GAWTC | 3 cut(s) | 227, 475, 568 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 919 |
| PleI | GAGTC | 2 cut(s) | 206, 347 |
| PmaCI | CACGTG | 1 cut(s) | 324 |
| PmlI | CACGTG | 1 cut(s) | 324 |
| PpsI | GAGTC | 2 cut(s) | 206, 347 |
| Ppu21I | YACGTR | 1 cut(s) | 324 |
| PshAI | GACNNNNGTC | 1 cut(s) | 297 |
| Psp124BI | GAGCTC | 1 cut(s) | 157 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspCI | CACGTG | 1 cut(s) | 324 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| RsaI | GTAC | 3 cut(s) | 284, 703, 846 |
| RsaNI | GTAC | 3 cut(s) | 283, 702, 845 |
| RseI | CAYNNNNRTG | 1 cut(s) | 347 |
| SacI | GAGCTC | 1 cut(s) | 157 |
| SacII | CCGCGG | 1 cut(s) | 409 |
| SalI | GTCGAC | 1 cut(s) | 209 |
| SapI | GCTCTTC | 1 cut(s) | 145 |
| SaqAI | TTAA | 3 cut(s) | 456, 585, 725 |
| Sau3AI | GATC | 2 cut(s) | 12, 496 |
| SchI | GAGTC | 2 cut(s) | 206, 348 |
| ScrFI | CCNGG | 1 cut(s) | 95 |
| SduI | GDGCHC | 3 cut(s) | 157, 966, 1050 |
| SfaNI | GCATC | 1 cut(s) | 913 |
| Sfr303I | CCGCGG | 1 cut(s) | 409 |
| SgrBI | CCGCGG | 1 cut(s) | 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 347 |
| SmlI | CTYRAG | 1 cut(s) | 959 |
| SmoI | CTYRAG | 1 cut(s) | 959 |
| SphI | GCATGC | 1 cut(s) | 336 |
| Sse9I | AATT | 6 cut(s) | 98, 131, 416, 615, 752, 1018 |
| SsiI | CCGC | 6 cut(s) | 330, 336, 406, 408, 609, 849 |
| SspMI | CTAG | 1 cut(s) | 699 |
| SstI | GAGCTC | 1 cut(s) | 157 |
| StyD4I | CCNGG | 1 cut(s) | 93 |
| TaaI | ACNGT | 2 cut(s) | 235, 250 |
| TaiI | ACGT | 1 cut(s) | 326 |
| TaqI | TCGA | 3 cut(s) | 81, 210, 230 |
| TasI | AATT | 6 cut(s) | 98, 131, 416, 615, 752, 1018 |
| TfiI | GAWTC | 3 cut(s) | 227, 475, 568 |
| Tru1I | TTAA | 3 cut(s) | 456, 585, 725 |
| Tru9I | TTAA | 3 cut(s) | 456, 585, 725 |
| TscAI | CASTG | 5 cut(s) | 22, 255, 565, 820, 1036 |
| TseFI | GTSAC | 4 cut(s) | 250, 349, 532, 877 |
| Tsp45I | GTSAC | 4 cut(s) | 250, 349, 532, 877 |
| TspDTI | ATGAA | 2 cut(s) | 375, 437 |
| TspRI | CASTG | 5 cut(s) | 22, 255, 565, 820, 1036 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 919 |
| VneI | GTGCAC | 1 cut(s) | 1046 |
| XapI | RAATTY | 1 cut(s) | 752 |
| XceI | RCATGY | 1 cut(s) | 336 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 916 |
| XmiI | GTMKAC | 1 cut(s) | 210 |
| XmnI | GAANNNNTTC | 1 cut(s) | 938 |
| XspI | CTAG | 1 cut(s) | 699 |