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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 343, 392 |
| AciI | CCGC | 2 cut(s) | 42, 445 |
| AcsI | RAATTY | 1 cut(s) | 616 |
| AcuI | CTGAAG | 1 cut(s) | 591 |
| AfaI | GTAC | 1 cut(s) | 135 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 410 |
| AgsI | TTSAA | 3 cut(s) | 257, 316, 608 |
| AluBI | AGCT | 4 cut(s) | 31, 95, 194, 542 |
| AluI | AGCT | 4 cut(s) | 31, 95, 194, 542 |
| Alw26I | GTCTC | 1 cut(s) | 567 |
| AoxI | GGCC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 2 cut(s) | 107, 578 |
| ApoI | RAATTY | 1 cut(s) | 616 |
| AspS9I | GGNCC | 1 cut(s) | 413 |
| AsuC2I | CCSGG | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 3 cut(s) | 172, 364, 625 |
| AvaII | GGWCC | 1 cut(s) | 413 |
| AxyI | CCTNAGG | 1 cut(s) | 405 |
| BbvI | GCAGC | 2 cut(s) | 94, 565 |
| BccI | CCATC | 2 cut(s) | 151, 583 |
| BcnI | CCSGG | 1 cut(s) | 261 |
| BcoDI | GTCTC | 1 cut(s) | 567 |
| BfaI | CTAG | 1 cut(s) | 180 |
| BfmI | CTRYAG | 3 cut(s) | 15, 507, 579 |
| BisI | GCNGC | 3 cut(s) | 43, 108, 579 |
| BlsI | GCNGC | 3 cut(s) | 44, 109, 580 |
| Bme1390I | CCNGG | 1 cut(s) | 261 |
| Bme18I | GGWCC | 1 cut(s) | 413 |
| BmgT120I | GGNCC | 1 cut(s) | 413 |
| BmiI | GGNNCC | 1 cut(s) | 414 |
| BmrFI | CCNGG | 1 cut(s) | 261 |
| BmsI | GCATC | 2 cut(s) | 253, 261 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 3 cut(s) | 296, 340, 482 |
| BpuMI | CCSGG | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 1 cut(s) | 260 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 410 |
| Bse118I | RCCGGY | 1 cut(s) | 130 |
| Bse21I | CCTNAGG | 1 cut(s) | 405 |
| Bse3DI | GCAATG | 1 cut(s) | 522 |
| BseDI | CCNNGG | 1 cut(s) | 260 |
| BseGI | GGATG | 2 cut(s) | 244, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 410 |
| BseMI | GCAATG | 1 cut(s) | 522 |
| BseMII | CTCAG | 3 cut(s) | 41, 135, 284 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseXI | GCAGC | 2 cut(s) | 94, 565 |
| BshFI | GGCC | 1 cut(s) | 122 |
| BsiSI | CCGG | 2 cut(s) | 131, 260 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 410 |
| BsmAI | GTCTC | 1 cut(s) | 567 |
| BsnI | GGCC | 1 cut(s) | 122 |
| BspACI | CCGC | 2 cut(s) | 42, 445 |
| BspANI | GGCC | 1 cut(s) | 122 |
| BspCNI | CTCAG | 3 cut(s) | 42, 136, 285 |
| BspLI | GGNNCC | 1 cut(s) | 414 |
| BspMAI | CTGCAG | 1 cut(s) | 583 |
| BsrDI | GCAATG | 1 cut(s) | 522 |
| BsrFI | RCCGGY | 1 cut(s) | 130 |
| BssAI | RCCGGY | 1 cut(s) | 130 |
| BssECI | CCNNGG | 1 cut(s) | 260 |
| Bst4CI | ACNGT | 1 cut(s) | 289 |
| BstDEI | CTNAG | 6 cut(s) | 27, 50, 68, 144, 293, 405 |
| BstF5I | GGATG | 2 cut(s) | 244, 475 |
| BstMAI | GTCTC | 1 cut(s) | 567 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 51, 71 |
| BstSCI | CCNGG | 1 cut(s) | 259 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 507, 579 |
| BstV1I | GCAGC | 2 cut(s) | 94, 565 |
| Bsu36I | CCTNAGG | 1 cut(s) | 405 |
| BsuRI | GGCC | 1 cut(s) | 122 |
| BtsCI | GGATG | 2 cut(s) | 244, 475 |
| BtsI | GCAGTG | 2 cut(s) | 61, 588 |
| BtsIMutI | CAGTG | 2 cut(s) | 61, 588 |
| Cfr10I | RCCGGY | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 1 cut(s) | 413 |
| Csp6I | GTAC | 1 cut(s) | 134 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 504, 539 |
| CviQI | GTAC | 1 cut(s) | 134 |
| DdeI | CTNAG | 6 cut(s) | 27, 50, 68, 144, 293, 405 |
| Eco147I | AGGCCT | 1 cut(s) | 122 |
| Eco47I | GGWCC | 1 cut(s) | 413 |
| Eco57I | CTGAAG | 1 cut(s) | 591 |
| Eco81I | CCTNAGG | 1 cut(s) | 405 |
| EcoRI | GAATTC | 1 cut(s) | 616 |
| FaiI | YATR | 3 cut(s) | 17, 84, 476 |
| FblI | GTMKAC | 2 cut(s) | 343, 392 |
| Fnu4HI | GCNGC | 3 cut(s) | 43, 108, 579 |
| FokI | GGATG | 2 cut(s) | 231, 482 |
| Fsp4HI | GCNGC | 3 cut(s) | 43, 108, 579 |
| FspBI | CTAG | 1 cut(s) | 180 |
| GluI | GCNGC | 3 cut(s) | 43, 108, 579 |
| HaeIII | GGCC | 1 cut(s) | 122 |
| HapII | CCGG | 2 cut(s) | 131, 260 |
| HincII | GTYRAC | 2 cut(s) | 174, 344 |
| HindII | GTYRAC | 2 cut(s) | 174, 344 |
| HindIII | AAGCTT | 1 cut(s) | 192 |
| HinfI | GANTC | 3 cut(s) | 295, 457, 503 |
| HpaII | CCGG | 2 cut(s) | 131, 260 |
| HphI | GGTGA | 3 cut(s) | 172, 364, 625 |
| Hpy166II | GTNNAC | 5 cut(s) | 174, 285, 344, 393, 416 |
| Hpy188I | TCNGA | 3 cut(s) | 51, 294, 567 |
| Hpy188III | TCNNGA | 3 cut(s) | 299, 384, 461 |
| Hpy8I | GTNNAC | 5 cut(s) | 174, 285, 344, 393, 416 |
| HpyAV | CCTTC | 3 cut(s) | 112, 504, 589 |
| HpyCH4III | ACNGT | 1 cut(s) | 289 |
| HpyCH4V | TGCA | 4 cut(s) | 65, 100, 110, 581 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 51, 71 |
| HpyF3I | CTNAG | 6 cut(s) | 27, 50, 68, 144, 293, 405 |
| LpnPI | CCDG | 5 cut(s) | 144, 156, 273, 284, 335 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 565 |
| LweI | GCATC | 2 cut(s) | 253, 261 |
| MaeI | CTAG | 1 cut(s) | 180 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MboII | GAAGA | 4 cut(s) | 17, 237, 277, 280 |
| MfeI | CAATTG | 1 cut(s) | 101 |
| MluCI | AATT | 3 cut(s) | 101, 303, 616 |
| MlyI | GAGTC | 1 cut(s) | 304 |
| MseI | TTAA | 4 cut(s) | 36, 125, 306, 452 |
| MspI | CCGG | 2 cut(s) | 131, 260 |
| MspR9I | CCNGG | 1 cut(s) | 261 |
| MunI | CAATTG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 51, 71 |
| NciI | CCSGG | 1 cut(s) | 261 |
| NlaIV | GGNNCC | 1 cut(s) | 414 |
| NmuCI | GTSAC | 1 cut(s) | 352 |
| PceI | AGGCCT | 1 cut(s) | 122 |
| PfeI | GAWTC | 2 cut(s) | 457, 503 |
| PflFI | GACNNNGTC | 1 cut(s) | 559 |
| PkrI | GCNGC | 3 cut(s) | 44, 109, 580 |
| PleI | GAGTC | 1 cut(s) | 303 |
| PpsI | GAGTC | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 1 cut(s) | 414 |
| PspPI | GGNCC | 1 cut(s) | 413 |
| PstI | CTGCAG | 1 cut(s) | 583 |
| PsyI | GACNNNGTC | 1 cut(s) | 559 |
| RsaI | GTAC | 1 cut(s) | 135 |
| RsaNI | GTAC | 1 cut(s) | 134 |
| SalI | GTCGAC | 1 cut(s) | 342 |
| SaqAI | TTAA | 4 cut(s) | 36, 125, 306, 452 |
| SatI | GCNGC | 3 cut(s) | 43, 108, 579 |
| Sau96I | GGNCC | 1 cut(s) | 413 |
| SchI | GAGTC | 1 cut(s) | 304 |
| ScrFI | CCNGG | 1 cut(s) | 261 |
| SetI | ASST | 7 cut(s) | 33, 97, 196, 282, 540, 544, 550 |
| SfaNI | GCATC | 2 cut(s) | 253, 261 |
| SfcI | CTRYAG | 3 cut(s) | 15, 507, 579 |
| SinI | GGWCC | 1 cut(s) | 413 |
| SmlI | CTYRAG | 3 cut(s) | 275, 319, 461 |
| SmoI | CTYRAG | 3 cut(s) | 275, 319, 461 |
| Sse9I | AATT | 3 cut(s) | 101, 303, 616 |
| SseBI | AGGCCT | 1 cut(s) | 122 |
| SsiI | CCGC | 2 cut(s) | 42, 445 |
| SspMI | CTAG | 1 cut(s) | 180 |
| StuI | AGGCCT | 1 cut(s) | 122 |
| StyD4I | CCNGG | 1 cut(s) | 259 |
| TaaI | ACNGT | 1 cut(s) | 289 |
| TaqI | TCGA | 1 cut(s) | 343 |
| TasI | AATT | 3 cut(s) | 101, 303, 616 |
| TauI | GCSGC | 1 cut(s) | 45 |
| TfiI | GAWTC | 2 cut(s) | 457, 503 |
| Tru1I | TTAA | 4 cut(s) | 36, 125, 306, 452 |
| Tru9I | TTAA | 4 cut(s) | 36, 125, 306, 452 |
| TscAI | CASTG | 2 cut(s) | 61, 588 |
| TseFI | GTSAC | 1 cut(s) | 352 |
| TseI | GCWGC | 2 cut(s) | 107, 578 |
| Tsp45I | GTSAC | 1 cut(s) | 352 |
| TspRI | CASTG | 2 cut(s) | 61, 588 |
| Tth111I | GACNNNGTC | 1 cut(s) | 559 |
| VpaK11BI | GGWCC | 1 cut(s) | 413 |
| XapI | RAATTY | 1 cut(s) | 616 |
| XmiI | GTMKAC | 2 cut(s) | 343, 392 |
| XspI | CTAG | 1 cut(s) | 180 |