Rmu_sc0024289.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024289.1
OG0000049
Physical Location & Seq
Forward (+)
1 .. 1678
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024289.1_g000001.1.cds

Sequence Viewer

Length: 1455 bp
gtggagaccctgagtcagacggactcgtctttggtggctctcggggatgcaggggctgtggcattccaggacaaccattggtacatggttggccgactgctggcgccgaaggcaaggcttctagggtttaagggtacaatctctataatttggcatatcagatcaggccttaccattcaagatgcaggtgagcgcttcgtgtttcaatttgagaatgaggttgtgcgtaatcggattttgcatggggatcattggttctattgtaacacgatacttgtggtgggagaatatgacgggtttgatccgccagagacggtggctttgaatttgatggagacttgggtagcggtgaggggtcttcatcttgctctgaggaataagacatcgctcactatggtgagtataactctagggcaagtggttcgaatggatttgactgccctgaaaagaaaaaaagaagagcagcagatcaagatagttttttatgttcgtcggaggattcgtacctggaaagtcattgaattttctccggtggtgaagccgaaattaacattcatctatgagaaggtcaagggatattgtcgtgactatgatttatttgttcatgatgcgatgggttgtgataaaactttgatcaaagaaaaggaagagattctggcacgatcatcagtggcggctatagctagtttgtctttgacctcaaggaaggatgtagtgccctctgtgatggagacggagttgggcacggggagtactgctctcgtttgtttggaggttggttcgggctcattggatcatggtgatgggccattgagcggtggagttgaccgcatagcaacagggaccaattcttattgtttgagctccatgatcctgggaagccatgttaggatgaatccagtcttggagaacttgtcttctataaggggagtgagtccccgagttcctattttcctcacccagcagaatgttgcttcaacatcgttggttttgagtccaattacgtctgaggtcggcaagaatgagcgggtggagttttcttccatgccggtgatgccaaatgggaggaaacgaaaagctctagcaatgctgaataggtttgggaagaagttcctagctttgcctgtttcgacgttggaagttggaaagaatacctccttgattgtgcagcacaagaatgggaatttactggtctcacctaagaagaagaagcttgggcgtccaaagggaagcaataataaggttaaggctaaagaggaacaggaggagaagaagatctgcaagtataagaggaggggaaaggctttgaattttgagtcaaatttggaagactcaacaaatgaggttgttaatgtgcatggaacaatgcaagtaggggagggtgagcctgagtccccggttgcagagggcgagatagaaggtgaggaatcactttctatgcgtgatttcatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

484

Amino Acids

53.69

Weight (kDa)

9.14

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
AasI GACNNNNNNGTC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 103
AccBSI CCGCTC 2 cut(s) 816, 1027
AciI CCGC 6 cut(s) 305, 347, 674, 816, 829, 1027
AclWI GGATC 4 cut(s) 255, 296, 801, 865
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 5 cut(s) 325, 521, 1183, 1309, 1321
AcyI GRCGYC 2 cut(s) 104, 1219
AfaI GTAC 4 cut(s) 83, 136, 505, 754
AfeI AGCGCT 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 100, 815
AgsI TTSAA 6 cut(s) 179, 206, 325, 521, 978, 1309
AhdI GACNNNNNGTC 1 cut(s) 12
AjnI CCWGG 3 cut(s) 66, 506, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AleI CACNNNNGTG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 5 cut(s) 683, 864, 1079, 1118, 1213
AluI AGCT 5 cut(s) 683, 864, 1079, 1118, 1213
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 4 cut(s) 305, 329, 725, 1198
AlwI GGATC 4 cut(s) 255, 296, 801, 865
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 2 cut(s) 41, 939
Aor51HI AGCGCT 1 cut(s) 194
AoxI GGCC 3 cut(s) 91, 166, 806
ApeKI GCWGC 2 cut(s) 463, 1168
ApoI RAATTY 5 cut(s) 325, 521, 1183, 1309, 1321
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
Asp700I GAANNNNTTC 2 cut(s) 651, 1109
AspLEI GCGC 2 cut(s) 106, 195
AspS9I GGNCC 2 cut(s) 806, 843
AsuC2I CCSGG 1 cut(s) 1397
AsuII TTCGAA 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 41, 939
AvaII GGWCC 1 cut(s) 843
BaeGI GKGCMC 2 cut(s) 720, 746
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 788, 866
BbsI GAAGAC 3 cut(s) 350, 909, 1335
Bbv12I GWGCWC 1 cut(s) 866
BbvI GCAGC 2 cut(s) 475, 1180
BccI CCATC 4 cut(s) 325, 607, 721, 797
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 3 cut(s) 68, 508, 875
BclI TGATCA 1 cut(s) 633
BcnI CCSGG 1 cut(s) 1397
BcoDI GTCTC 4 cut(s) 305, 329, 725, 1198
BfaI CTAG 5 cut(s) 122, 410, 684, 1082, 1115
BfmI CTRYAG 1 cut(s) 678
BfoI RGCGCY 2 cut(s) 107, 196
BfuAI ACCTGC 1 cut(s) 176
BglII AGATCT 1 cut(s) 1275
BisI GCNGC 3 cut(s) 464, 675, 1169
BlsI GCNGC 3 cut(s) 465, 676, 1170
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 4 cut(s) 68, 508, 875, 1397
Bme18I GGWCC 1 cut(s) 843
BmeRI GACNNNNNGTC 1 cut(s) 12
BmeT110I CYCGRG 2 cut(s) 41, 939
BmgT120I GGNCC 2 cut(s) 806, 843
BmiI GGNNCC 2 cut(s) 105, 844
BmrFI CCNGG 4 cut(s) 68, 508, 875, 1397
BmsI GCATC 4 cut(s) 37, 172, 598, 1044
BpiI GAAGAC 3 cut(s) 350, 909, 1335
BplI GAGNNNNNCTC 4 cut(s) 391, 423, 742, 774
Bpu14I TTCGAA 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 685
BpuMI CCSGG 1 cut(s) 1397
BsaHI GRCGYC 2 cut(s) 104, 1219
BsaI GGTCTC 1 cut(s) 1198
BsaJI CCNNGG 2 cut(s) 874, 1395
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 6 cut(s) 487, 517, 722, 752, 899, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 815
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 2 cut(s) 899, 1194
Bse3DI GCAATG 1 cut(s) 1092
BseBI CCWGG 3 cut(s) 68, 508, 875
BseDI CCNNGG 2 cut(s) 874, 1395
BseGI GGATG 3 cut(s) 52, 715, 897
BseLI CCNNNNNNNGG 2 cut(s) 100, 815
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 3 cut(s) 362, 999, 1380
BseNI ACTGG 2 cut(s) 899, 1194
BseRI GAGGAG 2 cut(s) 1280, 1306
BseSI GKGCMC 2 cut(s) 720, 746
BseXI GCAGC 2 cut(s) 475, 1180
BseYI CCCAGC 1 cut(s) 960
BsgI GTGCAG 1 cut(s) 1187
BshFI GGCC 3 cut(s) 93, 168, 808
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 866
BsiHKCI CYCGRG 2 cut(s) 41, 939
BsiSI CCGG 3 cut(s) 530, 1049, 1397
BslFI GGGAC 3 cut(s) 856, 921, 1378
BslI CCNNNNNNNGG 2 cut(s) 100, 815
BsmAI GTCTC 4 cut(s) 305, 329, 725, 1198
BsmBI CGTCTC 2 cut(s) 305, 725
BsmFI GGGAC 3 cut(s) 856, 921, 1378
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 3 cut(s) 93, 168, 808
Bso31I GGTCTC 1 cut(s) 1198
BsoBI CYCGRG 2 cut(s) 41, 939
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 4 cut(s) 720, 746, 788, 866
Bsp143I GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
BspACI CCGC 6 cut(s) 305, 347, 674, 816, 829, 1027
BspANI GGCC 3 cut(s) 93, 168, 808
BspCNI CTCAG 3 cut(s) 363, 1000, 1381
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 105, 844
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 4 cut(s) 255, 296, 801, 865
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 1198
BsrBI CCGCTC 2 cut(s) 816, 1027
BsrDI GCAATG 1 cut(s) 1092
BsrFI RCCGGY 1 cut(s) 1048
BsrI ACTGG 2 cut(s) 899, 1194
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 2 cut(s) 874, 1395
BssMI GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
BssNI GRCGYC 2 cut(s) 104, 1219
Bst2UI CCWGG 3 cut(s) 68, 508, 875
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 453, 642
BstACI GRCGYC 2 cut(s) 104, 1219
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 5 cut(s) 11, 371, 1008, 1200, 1389
BstF5I GGATG 3 cut(s) 52, 715, 897
BstH2I RGCGCY 2 cut(s) 107, 196
BstHHI GCGC 2 cut(s) 106, 195
BstKTI GATC 9 cut(s) 164, 250, 304, 471, 636, 665, 796, 873, 1278
BstMAI GTCTC 4 cut(s) 305, 329, 725, 1198
BstMBI GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
BstMWI GCNNNNNNNGC 3 cut(s) 110, 680, 1054
BstNI CCWGG 3 cut(s) 68, 508, 875
BstSCI CCNGG 4 cut(s) 66, 506, 873, 1395
BstSFI CTRYAG 1 cut(s) 678
BstSLI GKGCMC 2 cut(s) 720, 746
BstV1I GCAGC 2 cut(s) 475, 1180
BstV2I GAAGAC 3 cut(s) 350, 909, 1335
BstX2I RGATCY 1 cut(s) 1275
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 1275
BsuRI GGCC 3 cut(s) 93, 168, 808
BtgZI GCGATG 2 cut(s) 369, 626
BtsCI GGATG 3 cut(s) 52, 715, 897
BtsIMutI CAGTG 1 cut(s) 675
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 604
CfoI GCGC 2 cut(s) 106, 195
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 2 cut(s) 806, 843
CseI GACGC 1 cut(s) 1208
Csp6I GTAC 4 cut(s) 82, 135, 504, 753
CviAII CATG 8 cut(s) 85, 242, 605, 797, 868, 884, 1045, 1358
CviQI GTAC 4 cut(s) 82, 135, 504, 753
DdeI CTNAG 5 cut(s) 11, 371, 1008, 1200, 1389
DinI GGCGCC 1 cut(s) 105
DpnI GATC 9 cut(s) 163, 249, 303, 470, 635, 664, 795, 872, 1277
DpnII GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
DrdI GACNNNNNNGTC 1 cut(s) 25
DriI GACNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 453, 642
Eam1105I GACNNNNNGTC 1 cut(s) 12
EarI CTCTTC 2 cut(s) 453, 642
EciI GGCGGA 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 864
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 788, 866
Eco31I GGTCTC 1 cut(s) 1198
Eco47I GGWCC 1 cut(s) 843
Eco47III AGCGCT 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 864
Eco88I CYCGRG 2 cut(s) 41, 939
EcoICRI GAGCTC 1 cut(s) 864
EcoRII CCWGG 3 cut(s) 66, 506, 873
EcoT38I GRGCYC 2 cut(s) 788, 866
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
Esp3I CGTCTC 2 cut(s) 305, 725
FaeI CATG 8 cut(s) 88, 245, 608, 800, 871, 887, 1048, 1361
FaqI GGGAC 3 cut(s) 856, 921, 1378
FatI CATG 8 cut(s) 84, 241, 604, 796, 867, 883, 1044, 1357
FauI CCCGC 1 cut(s) 1020
FbaI TGATCA 1 cut(s) 633
Fnu4HI GCNGC 3 cut(s) 464, 675, 1169
FokI GGATG 3 cut(s) 59, 722, 904
FriOI GRGCYC 2 cut(s) 788, 866
Fsp4HI GCNGC 3 cut(s) 464, 675, 1169
FspBI CTAG 5 cut(s) 122, 410, 684, 1082, 1115
GlaI GCGC 2 cut(s) 105, 194
GluI GCNGC 3 cut(s) 464, 675, 1169
GsaI CCCAGC 1 cut(s) 964
HaeII RGCGCY 2 cut(s) 107, 196
HaeIII GGCC 3 cut(s) 93, 168, 808
HapII CCGG 3 cut(s) 530, 1049, 1397
HgaI GACGC 1 cut(s) 1208
HhaI GCGC 2 cut(s) 106, 195
Hin1I GRCGYC 2 cut(s) 104, 1219
Hin1II CATG 8 cut(s) 88, 245, 608, 800, 871, 887, 1048, 1361
Hin6I GCGC 2 cut(s) 104, 193
HinP1I GCGC 2 cut(s) 104, 193
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 1211
HpaII CCGG 3 cut(s) 530, 1049, 1397
Hpy166II GTNNAC 1 cut(s) 826
Hpy188I TCNGA 6 cut(s) 18, 161, 234, 372, 495, 1009
Hpy188III TCNNGA 4 cut(s) 179, 472, 584, 605
Hpy8I GTNNAC 1 cut(s) 826
Hpy99I CGWCG 2 cut(s) 495, 1135
HpyAV CCTTC 4 cut(s) 103, 559, 700, 1412
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 1004, 1133
HpyCH4V TGCA 8 cut(s) 50, 185, 241, 1168, 1281, 1357, 1369, 1403
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 680, 1054
HpyF3I CTNAG 5 cut(s) 11, 371, 1008, 1200, 1389
HpySE526I ACGT 2 cut(s) 1004, 1133
Hsp92I GRCGYC 2 cut(s) 104, 1219
Hsp92II CATG 8 cut(s) 88, 245, 608, 800, 871, 887, 1048, 1361
HspAI GCGC 2 cut(s) 104, 193
KasI GGCGCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 1 cut(s) 869
Lsp1109I GCAGC 2 cut(s) 475, 1180
LweI GCATC 4 cut(s) 37, 172, 598, 1044
MaeI CTAG 5 cut(s) 122, 410, 684, 1082, 1115
MaeII ACGT 2 cut(s) 1004, 1133
MaeIII GTNAC 2 cut(s) 263, 584
MalI GATC 9 cut(s) 163, 249, 303, 470, 635, 664, 795, 872, 1277
MbiI CCGCTC 2 cut(s) 816, 1027
MboI GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
MflI RGATCY 1 cut(s) 1275
MhlI GDGCHC 4 cut(s) 720, 746, 788, 866
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 7 cut(s) 17, 22, 943, 1003, 1325, 1325, 1400
MmeI TCCRAC 3 cut(s) 473, 1116, 1123
MroXI GAANNNNTTC 2 cut(s) 651, 1109
MseI TTAA 5 cut(s) 129, 548, 1245, 1350, 1453
MslI CAYNNNNRTG 4 cut(s) 395, 801, 1049, 1176
MspI CCGG 3 cut(s) 530, 1049, 1397
MspR9I CCNGG 4 cut(s) 68, 508, 875, 1397
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 3 cut(s) 68, 508, 875
MwoI GCNNNNNNNGC 3 cut(s) 110, 680, 1054
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 1397
NdeII GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
NlaIII CATG 8 cut(s) 88, 245, 608, 800, 871, 887, 1048, 1361
NlaIV GGNNCC 2 cut(s) 105, 844
NmuCI GTSAC 1 cut(s) 584
NspV TTCGAA 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 395
PagI TCATGA 1 cut(s) 604
PaqCI CACCTGC 1 cut(s) 176
PceI AGGCCT 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 2 cut(s) 651, 1109
PfeI GAWTC 4 cut(s) 499, 652, 895, 1427
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 3 cut(s) 465, 676, 1170
PleI GAGTC 7 cut(s) 17, 21, 942, 1002, 1324, 1325, 1399
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 7 cut(s) 17, 21, 942, 1002, 1324, 1325, 1399
Psp124BI GAGCTC 1 cut(s) 866
Psp6I CCWGG 3 cut(s) 66, 506, 873
PspFI CCCAGC 1 cut(s) 960
PspGI CCWGG 3 cut(s) 66, 506, 873
PspN4I GGNNCC 2 cut(s) 105, 844
PspPI GGNCC 2 cut(s) 806, 843
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 1275
RsaI GTAC 4 cut(s) 83, 136, 505, 754
RsaNI GTAC 4 cut(s) 82, 135, 504, 753
RseI CAYNNNNRTG 4 cut(s) 395, 801, 1049, 1176
SacI GAGCTC 1 cut(s) 866
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 5 cut(s) 129, 548, 1245, 1350, 1453
SatI GCNGC 3 cut(s) 464, 675, 1169
Sau3AI GATC 9 cut(s) 161, 247, 301, 468, 633, 662, 793, 870, 1275
Sau96I GGNCC 2 cut(s) 806, 843
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 7 cut(s) 17, 22, 943, 1003, 1325, 1325, 1400
ScrFI CCNGG 4 cut(s) 68, 508, 875, 1397
SduI GDGCHC 4 cut(s) 720, 746, 788, 866
SfaNI GCATC 4 cut(s) 37, 172, 598, 1044
SfcI CTRYAG 1 cut(s) 678
SfoI GGCGCC 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 424
SinI GGWCC 1 cut(s) 843
SmiMI CAYNNNNRTG 4 cut(s) 395, 801, 1049, 1176
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 6 cut(s) 305, 347, 674, 816, 829, 1027
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 5 cut(s) 122, 410, 684, 1082, 1115
SstI GAGCTC 1 cut(s) 866
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 4 cut(s) 66, 506, 873, 1395
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 1007, 1136
TaqI TCGA 2 cut(s) 424, 1130
TatI WGTACW 1 cut(s) 752
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 4 cut(s) 499, 652, 895, 1427
Tru1I TTAA 5 cut(s) 129, 548, 1245, 1350, 1453
Tru9I TTAA 5 cut(s) 129, 548, 1245, 1350, 1453
TscAI CASTG 1 cut(s) 675
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 2 cut(s) 463, 1168
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 5 cut(s) 350, 544, 593, 908, 1438
TspGWI ACGGA 2 cut(s) 35, 749
TspRI CASTG 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 843
XapI RAATTY 5 cut(s) 325, 521, 1183, 1309, 1321
XmnI GAANNNNTTC 2 cut(s) 651, 1109
XspI CTAG 5 cut(s) 122, 410, 684, 1082, 1115
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.