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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 77 |
| AcuI | CTGAAG | 1 cut(s) | 119 |
| AcyI | GRCGYC | 1 cut(s) | 488 |
| AfaI | GTAC | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 302 |
| AgsI | TTSAA | 2 cut(s) | 256, 575 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 480 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 269, 301 |
| AluBI | AGCT | 3 cut(s) | 57, 421, 425 |
| AluI | AGCT | 3 cut(s) | 57, 421, 425 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| Ama87I | CYCGRG | 1 cut(s) | 426 |
| AoxI | GGCC | 2 cut(s) | 504, 558 |
| ApeKI | GCWGC | 1 cut(s) | 28 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AsuC2I | CCSGG | 2 cut(s) | 274, 303 |
| AsuHPI | GGTGA | 2 cut(s) | 121, 174 |
| AsuNHI | GCTAGC | 1 cut(s) | 421 |
| AvaI | CYCGRG | 1 cut(s) | 426 |
| BbsI | GAAGAC | 2 cut(s) | 397, 479 |
| BbvI | GCAGC | 1 cut(s) | 15 |
| BccI | CCATC | 3 cut(s) | 148, 314, 379 |
| BcnI | CCSGG | 2 cut(s) | 274, 303 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BfaI | CTAG | 4 cut(s) | 74, 83, 422, 546 |
| BfmI | CTRYAG | 1 cut(s) | 498 |
| BisI | GCNGC | 1 cut(s) | 29 |
| BlsI | GCNGC | 1 cut(s) | 30 |
| BmcAI | AGTACT | 1 cut(s) | 115 |
| Bme1390I | CCNGG | 2 cut(s) | 274, 303 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 480 |
| BmeT110I | CYCGRG | 1 cut(s) | 426 |
| BmrFI | CCNGG | 2 cut(s) | 274, 303 |
| BmsI | GCATC | 1 cut(s) | 32 |
| BmtI | GCTAGC | 1 cut(s) | 425 |
| BpiI | GAAGAC | 2 cut(s) | 397, 479 |
| BpuMI | CCSGG | 2 cut(s) | 274, 303 |
| BsaHI | GRCGYC | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 2 cut(s) | 36, 561 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 2 cut(s) | 36, 561 |
| BseGI | GGATG | 4 cut(s) | 145, 202, 208, 325 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 302 |
| BseMII | CTCAG | 1 cut(s) | 483 |
| BseRI | GAGGAG | 1 cut(s) | 554 |
| BseXI | GCAGC | 1 cut(s) | 15 |
| BseYI | CCCAGC | 1 cut(s) | 53 |
| BsgI | GTGCAG | 1 cut(s) | 14 |
| BshFI | GGCC | 2 cut(s) | 506, 560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 426 |
| BsiSI | CCGG | 2 cut(s) | 273, 302 |
| BslFI | GGGAC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 302 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsmFI | GGGAC | 1 cut(s) | 318 |
| BsnI | GGCC | 2 cut(s) | 506, 560 |
| BsoBI | CYCGRG | 1 cut(s) | 426 |
| BspACI | CCGC | 1 cut(s) | 77 |
| BspANI | GGCC | 2 cut(s) | 506, 560 |
| BspCNI | CTCAG | 1 cut(s) | 484 |
| BspOI | GCTAGC | 1 cut(s) | 425 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BssECI | CCNNGG | 2 cut(s) | 36, 561 |
| BssNI | GRCGYC | 1 cut(s) | 488 |
| BssT1I | CCWWGG | 1 cut(s) | 36 |
| Bst4CI | ACNGT | 1 cut(s) | 499 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstACI | GRCGYC | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 1 cut(s) | 423 |
| BstDEI | CTNAG | 2 cut(s) | 58, 492 |
| BstF5I | GGATG | 4 cut(s) | 145, 202, 208, 325 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstSCI | CCNGG | 2 cut(s) | 272, 301 |
| BstSFI | CTRYAG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 1 cut(s) | 15 |
| BstV2I | GAAGAC | 2 cut(s) | 397, 479 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 43, 61 |
| BsuRI | GGCC | 2 cut(s) | 506, 560 |
| BtgZI | GCGATG | 1 cut(s) | 9 |
| BtsCI | GGATG | 4 cut(s) | 145, 202, 208, 325 |
| Cac8I | GCNNGC | 1 cut(s) | 423 |
| CseI | GACGC | 1 cut(s) | 477 |
| Csp6I | GTAC | 1 cut(s) | 114 |
| CviAII | CATG | 1 cut(s) | 350 |
| CviQI | GTAC | 1 cut(s) | 114 |
| DdeI | CTNAG | 2 cut(s) | 58, 492 |
| DriI | GACNNNNNGTC | 1 cut(s) | 480 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 480 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 36 |
| Eco32I | GATATC | 1 cut(s) | 366 |
| Eco57I | CTGAAG | 1 cut(s) | 119 |
| Eco88I | CYCGRG | 1 cut(s) | 426 |
| EcoRV | GATATC | 1 cut(s) | 366 |
| EcoT14I | CCWWGG | 1 cut(s) | 36 |
| EcoT22I | ATGCAT | 1 cut(s) | 94 |
| ErhI | CCWWGG | 1 cut(s) | 36 |
| FaeI | CATG | 1 cut(s) | 353 |
| FaiI | YATR | 7 cut(s) | 137, 146, 194, 345, 351, 480, 552 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 269, 301 |
| FaqI | GGGAC | 1 cut(s) | 318 |
| FatI | CATG | 1 cut(s) | 349 |
| FauI | CCCGC | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 1 cut(s) | 29 |
| FokI | GGATG | 4 cut(s) | 152, 209, 215, 332 |
| Fsp4HI | GCNGC | 1 cut(s) | 29 |
| FspBI | CTAG | 4 cut(s) | 74, 83, 422, 546 |
| GluI | GCNGC | 1 cut(s) | 29 |
| GsaI | CCCAGC | 1 cut(s) | 57 |
| HaeIII | GGCC | 2 cut(s) | 506, 560 |
| HapII | CCGG | 2 cut(s) | 273, 302 |
| HgaI | GACGC | 1 cut(s) | 477 |
| Hin1I | GRCGYC | 1 cut(s) | 488 |
| Hin1II | CATG | 1 cut(s) | 353 |
| HinfI | GANTC | 5 cut(s) | 260, 306, 436, 475, 593 |
| HpaII | CCGG | 2 cut(s) | 273, 302 |
| HphI | GGTGA | 2 cut(s) | 121, 174 |
| Hpy188I | TCNGA | 4 cut(s) | 339, 363, 462, 493 |
| Hpy188III | TCNNGA | 4 cut(s) | 215, 296, 428, 440 |
| HpyAV | CCTTC | 5 cut(s) | 8, 189, 241, 391, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 457 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 92, 532 |
| HpyF3I | CTNAG | 2 cut(s) | 58, 492 |
| HpySE526I | ACGT | 1 cut(s) | 457 |
| Hsp92I | GRCGYC | 1 cut(s) | 488 |
| Hsp92II | CATG | 1 cut(s) | 353 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LmnI | GCTCC | 1 cut(s) | 181 |
| Lsp1109I | GCAGC | 1 cut(s) | 15 |
| LweI | GCATC | 1 cut(s) | 32 |
| MaeI | CTAG | 4 cut(s) | 74, 83, 422, 546 |
| MaeII | ACGT | 1 cut(s) | 457 |
| MaeIII | GTNAC | 1 cut(s) | 205 |
| MfeI | CAATTG | 1 cut(s) | 312 |
| MluCI | AATT | 2 cut(s) | 103, 312 |
| MlyI | GAGTC | 4 cut(s) | 300, 430, 469, 587 |
| Mph1103I | ATGCAT | 1 cut(s) | 94 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MseI | TTAA | 1 cut(s) | 326 |
| MslI | CAYNNNNRTG | 2 cut(s) | 348, 518 |
| MspI | CCGG | 2 cut(s) | 273, 302 |
| MspR9I | CCNGG | 2 cut(s) | 274, 303 |
| MunI | CAATTG | 1 cut(s) | 312 |
| NciI | CCSGG | 2 cut(s) | 274, 303 |
| NheI | GCTAGC | 1 cut(s) | 421 |
| NlaIII | CATG | 1 cut(s) | 353 |
| NmuCI | GTSAC | 1 cut(s) | 205 |
| NsiI | ATGCAT | 1 cut(s) | 94 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 1 cut(s) | 260 |
| PkrI | GCNGC | 1 cut(s) | 30 |
| PleI | GAGTC | 4 cut(s) | 300, 430, 469, 587 |
| PpsI | GAGTC | 4 cut(s) | 300, 430, 469, 587 |
| PspFI | CCCAGC | 1 cut(s) | 53 |
| RsaI | GTAC | 1 cut(s) | 115 |
| RsaNI | GTAC | 1 cut(s) | 114 |
| RseI | CAYNNNNRTG | 2 cut(s) | 348, 518 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 1 cut(s) | 326 |
| SatI | GCNGC | 1 cut(s) | 29 |
| ScaI | AGTACT | 1 cut(s) | 115 |
| SchI | GAGTC | 4 cut(s) | 300, 430, 469, 587 |
| ScrFI | CCNGG | 2 cut(s) | 274, 303 |
| SetI | ASST | 8 cut(s) | 59, 73, 187, 252, 423, 427, 460, 522 |
| SfaNI | GCATC | 1 cut(s) | 32 |
| SfcI | CTRYAG | 1 cut(s) | 498 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 348, 518 |
| Sse9I | AATT | 2 cut(s) | 103, 312 |
| SsiI | CCGC | 1 cut(s) | 77 |
| SspMI | CTAG | 4 cut(s) | 74, 83, 422, 546 |
| StyD4I | CCNGG | 2 cut(s) | 272, 301 |
| StyI | CCWWGG | 1 cut(s) | 36 |
| TaaI | ACNGT | 1 cut(s) | 499 |
| TaiI | ACGT | 1 cut(s) | 460 |
| TaqI | TCGA | 1 cut(s) | 268 |
| TaqII | GACCGA | 1 cut(s) | 409 |
| TasI | AATT | 2 cut(s) | 103, 312 |
| TatI | WGTACW | 1 cut(s) | 113 |
| TfiI | GAWTC | 1 cut(s) | 260 |
| Tru1I | TTAA | 1 cut(s) | 326 |
| Tru9I | TTAA | 1 cut(s) | 326 |
| TseFI | GTSAC | 1 cut(s) | 205 |
| TseI | GCWGC | 1 cut(s) | 28 |
| Tsp45I | GTSAC | 1 cut(s) | 205 |
| TspDTI | ATGAA | 3 cut(s) | 161, 273, 594 |
| TspGWI | ACGGA | 1 cut(s) | 259 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |
| XspI | CTAG | 4 cut(s) | 74, 83, 422, 546 |
| ZrmI | AGTACT | 1 cut(s) | 115 |
| Zsp2I | ATGCAT | 1 cut(s) | 94 |