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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 110, 281 |
| AclWI | GGATC | 2 cut(s) | 124, 291 |
| AcsI | RAATTY | 1 cut(s) | 446 |
| AcyI | GRCGYC | 3 cut(s) | 329, 464, 760 |
| AdeI | CACNNNGTG | 1 cut(s) | 376 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 3 cut(s) | 453, 680, 710 |
| AjnI | CCWGG | 2 cut(s) | 101, 469 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 638, 670, 710, 742 |
| AluBI | AGCT | 2 cut(s) | 407, 422 |
| AluI | AGCT | 2 cut(s) | 407, 422 |
| Alw21I | GWGCWC | 1 cut(s) | 796 |
| Alw26I | GTCTC | 2 cut(s) | 92, 739 |
| AlwI | GGATC | 2 cut(s) | 124, 291 |
| Ama87I | CYCGRG | 1 cut(s) | 795 |
| ApeKI | GCWGC | 2 cut(s) | 348, 379 |
| ApoI | RAATTY | 1 cut(s) | 446 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 717, 749 |
| AspS9I | GGNCC | 2 cut(s) | 79, 415 |
| AsuC2I | CCSGG | 1 cut(s) | 430 |
| AsuHPI | GGTGA | 3 cut(s) | 325, 521, 538 |
| AvaI | CYCGRG | 1 cut(s) | 795 |
| AvaII | GGWCC | 2 cut(s) | 79, 415 |
| AxyI | CCTNAGG | 1 cut(s) | 601 |
| BaeGI | GKGCMC | 1 cut(s) | 591 |
| BbsI | GAAGAC | 2 cut(s) | 299, 833 |
| Bbv12I | GWGCWC | 1 cut(s) | 796 |
| BbvI | GCAGC | 2 cut(s) | 360, 366 |
| BccI | CCATC | 3 cut(s) | 319, 541, 670 |
| BceAI | ACGGC | 1 cut(s) | 17 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 215, 249 |
| BciT130I | CCWGG | 2 cut(s) | 103, 471 |
| BclI | TGATCA | 1 cut(s) | 193 |
| BcnI | CCSGG | 1 cut(s) | 430 |
| BcoDI | GTCTC | 2 cut(s) | 92, 739 |
| BfmI | CTRYAG | 2 cut(s) | 22, 380 |
| BglII | AGATCT | 1 cut(s) | 628 |
| BisI | GCNGC | 2 cut(s) | 349, 380 |
| BlsI | GCNGC | 2 cut(s) | 350, 381 |
| Bme1390I | CCNGG | 3 cut(s) | 103, 430, 471 |
| Bme18I | GGWCC | 2 cut(s) | 79, 415 |
| BmeT110I | CYCGRG | 1 cut(s) | 795 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 415 |
| BmiI | GGNNCC | 1 cut(s) | 660 |
| BmrFI | CCNGG | 3 cut(s) | 103, 430, 471 |
| BmsI | GCATC | 3 cut(s) | 352, 388, 465 |
| BpiI | GAAGAC | 2 cut(s) | 299, 833 |
| BpmI | CTGGAG | 1 cut(s) | 453 |
| BpuEI | CTTGAG | 2 cut(s) | 387, 824 |
| BpuMI | CCSGG | 1 cut(s) | 430 |
| BsaHI | GRCGYC | 3 cut(s) | 329, 464, 760 |
| BsaI | GGTCTC | 2 cut(s) | 92, 739 |
| BsaJI | CCNNGG | 3 cut(s) | 102, 470, 740 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse21I | CCTNAGG | 1 cut(s) | 601 |
| BseBI | CCWGG | 2 cut(s) | 103, 471 |
| BseDI | CCNNGG | 3 cut(s) | 102, 470, 740 |
| BseGI | GGATG | 3 cut(s) | 330, 480, 691 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseRI | GAGGAG | 2 cut(s) | 233, 236 |
| BseSI | GKGCMC | 1 cut(s) | 591 |
| BseXI | GCAGC | 2 cut(s) | 360, 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 796 |
| BsiHKCI | CYCGRG | 1 cut(s) | 795 |
| BsiSI | CCGG | 1 cut(s) | 429 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 2 cut(s) | 92, 739 |
| Bso31I | GGTCTC | 2 cut(s) | 92, 739 |
| BsoBI | CYCGRG | 1 cut(s) | 795 |
| Bsp1286I | GDGCHC | 2 cut(s) | 591, 796 |
| Bsp143I | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| BspACI | CCGC | 2 cut(s) | 110, 281 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspLI | GGNNCC | 1 cut(s) | 660 |
| BspMAI | CTGCAG | 1 cut(s) | 384 |
| BspPI | GGATC | 2 cut(s) | 124, 291 |
| BspTNI | GGTCTC | 2 cut(s) | 92, 739 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 3 cut(s) | 102, 470, 740 |
| BssMI | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| BssNI | GRCGYC | 3 cut(s) | 329, 464, 760 |
| BssT1I | CCWWGG | 1 cut(s) | 740 |
| Bst2UI | CCWGG | 2 cut(s) | 103, 471 |
| Bst4CI | ACNGT | 2 cut(s) | 376, 699 |
| Bst6I | CTCTTC | 1 cut(s) | 598 |
| BstACI | GRCGYC | 3 cut(s) | 329, 464, 760 |
| BstC8I | GCNNGC | 1 cut(s) | 819 |
| BstDEI | CTNAG | 2 cut(s) | 44, 601 |
| BstF5I | GGATG | 3 cut(s) | 330, 480, 691 |
| BstKTI | GATC | 6 cut(s) | 132, 174, 196, 286, 562, 631 |
| BstMAI | GTCTC | 2 cut(s) | 92, 739 |
| BstMBI | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNI | CCWGG | 2 cut(s) | 103, 471 |
| BstSCI | CCNGG | 3 cut(s) | 101, 428, 469 |
| BstSFI | CTRYAG | 2 cut(s) | 22, 380 |
| BstSLI | GKGCMC | 1 cut(s) | 591 |
| BstV1I | GCAGC | 2 cut(s) | 360, 366 |
| BstV2I | GAAGAC | 2 cut(s) | 299, 833 |
| BstX2I | RGATCY | 1 cut(s) | 628 |
| BstYI | RGATCY | 1 cut(s) | 628 |
| Bsu36I | CCTNAGG | 1 cut(s) | 601 |
| BtsCI | GGATG | 3 cut(s) | 330, 480, 691 |
| BtsI | GCAGTG | 1 cut(s) | 307 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 307 |
| Cac8I | GCNNGC | 1 cut(s) | 819 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 415 |
| CseI | GACGC | 3 cut(s) | 318, 472, 749 |
| CviAII | CATG | 2 cut(s) | 5, 439 |
| CviJI | RGCY | 3 cut(s) | 407, 422, 428 |
| CviKI_1 | RGCY | 3 cut(s) | 407, 422, 428 |
| DdeI | CTNAG | 2 cut(s) | 44, 601 |
| DpnI | GATC | 6 cut(s) | 131, 173, 195, 285, 561, 630 |
| DpnII | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| DraIII | CACNNNGTG | 1 cut(s) | 376 |
| Eam1104I | CTCTTC | 1 cut(s) | 598 |
| EarI | CTCTTC | 1 cut(s) | 598 |
| EciI | GGCGGA | 1 cut(s) | 296 |
| Eco130I | CCWWGG | 1 cut(s) | 740 |
| Eco31I | GGTCTC | 2 cut(s) | 92, 739 |
| Eco47I | GGWCC | 2 cut(s) | 79, 415 |
| Eco81I | CCTNAGG | 1 cut(s) | 601 |
| Eco88I | CYCGRG | 1 cut(s) | 795 |
| EcoO109I | RGGNCCY | 1 cut(s) | 79 |
| EcoRII | CCWGG | 2 cut(s) | 101, 469 |
| EcoT14I | CCWWGG | 1 cut(s) | 740 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 740 |
| FaeI | CATG | 2 cut(s) | 8, 442 |
| FaiI | YATR | 6 cut(s) | 6, 24, 156, 158, 210, 440 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 638, 670 |
| FatI | CATG | 2 cut(s) | 4, 438 |
| FauNDI | CATATG | 1 cut(s) | 156 |
| FbaI | TGATCA | 1 cut(s) | 193 |
| Fnu4HI | GCNGC | 2 cut(s) | 349, 380 |
| FokI | GGATG | 3 cut(s) | 337, 487, 698 |
| Fsp4HI | GCNGC | 2 cut(s) | 349, 380 |
| GluI | GCNGC | 2 cut(s) | 349, 380 |
| GsuI | CTGGAG | 1 cut(s) | 453 |
| HapII | CCGG | 1 cut(s) | 429 |
| HgaI | GACGC | 3 cut(s) | 318, 472, 749 |
| Hin1I | GRCGYC | 3 cut(s) | 329, 464, 760 |
| Hin1II | CATG | 2 cut(s) | 8, 442 |
| HindIII | AAGCTT | 2 cut(s) | 405, 420 |
| HinfI | GANTC | 3 cut(s) | 232, 529, 798 |
| HpaII | CCGG | 1 cut(s) | 429 |
| HphI | GGTGA | 3 cut(s) | 325, 521, 538 |
| Hpy188I | TCNGA | 7 cut(s) | 47, 87, 198, 261, 288, 361, 667 |
| Hpy188III | TCNNGA | 1 cut(s) | 540 |
| Hpy99I | CGWCG | 2 cut(s) | 172, 541 |
| HpyAV | CCTTC | 4 cut(s) | 70, 92, 194, 208 |
| HpyCH4III | ACNGT | 2 cut(s) | 376, 699 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 154, 365, 382, 609, 817 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 2 cut(s) | 44, 601 |
| Hsp92I | GRCGYC | 3 cut(s) | 329, 464, 760 |
| Hsp92II | CATG | 2 cut(s) | 8, 442 |
| Ksp22I | TGATCA | 1 cut(s) | 193 |
| Kzo9I | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| Lsp1109I | GCAGC | 2 cut(s) | 360, 366 |
| LweI | GCATC | 3 cut(s) | 352, 388, 465 |
| MaeIII | GTNAC | 1 cut(s) | 487 |
| MalI | GATC | 6 cut(s) | 131, 173, 195, 285, 561, 630 |
| MboI | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| MboII | GAAGA | 5 cut(s) | 299, 585, 757, 760, 838 |
| MflI | RGATCY | 1 cut(s) | 628 |
| MhlI | GDGCHC | 2 cut(s) | 591, 796 |
| MluCI | AATT | 4 cut(s) | 446, 457, 499, 725 |
| MlyI | GAGTC | 1 cut(s) | 807 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 9 cut(s) | 57, 211, 214, 222, 260, 271, 287, 477, 601 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 435, 498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspI | CCGG | 1 cut(s) | 429 |
| MspR9I | CCNGG | 3 cut(s) | 103, 430, 471 |
| MvaI | CCWGG | 2 cut(s) | 103, 471 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NciI | CCSGG | 1 cut(s) | 430 |
| NdeI | CATATG | 1 cut(s) | 156 |
| NdeII | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| NlaIII | CATG | 2 cut(s) | 8, 442 |
| NlaIV | GGNNCC | 1 cut(s) | 660 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaeR7I | CTCGAG | 1 cut(s) | 795 |
| PfeI | GAWTC | 2 cut(s) | 232, 529 |
| PkrI | GCNGC | 2 cut(s) | 350, 381 |
| PleI | GAGTC | 1 cut(s) | 806 |
| PpsI | GAGTC | 1 cut(s) | 806 |
| PpuMI | RGGWCCY | 1 cut(s) | 79 |
| Psp5II | RGGWCCY | 1 cut(s) | 79 |
| Psp6I | CCWGG | 2 cut(s) | 101, 469 |
| PspGI | CCWGG | 2 cut(s) | 101, 469 |
| PspN4I | GGNNCC | 1 cut(s) | 660 |
| PspPI | GGNCC | 2 cut(s) | 79, 415 |
| PspPPI | RGGWCCY | 1 cut(s) | 79 |
| PspXI | VCTCGAGB | 1 cut(s) | 795 |
| PstI | CTGCAG | 1 cut(s) | 384 |
| PsuI | RGATCY | 1 cut(s) | 628 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SaqAI | TTAA | 2 cut(s) | 435, 498 |
| SatI | GCNGC | 2 cut(s) | 349, 380 |
| Sau3AI | GATC | 6 cut(s) | 129, 171, 193, 283, 559, 628 |
| Sau96I | GGNCC | 2 cut(s) | 79, 415 |
| SchI | GAGTC | 1 cut(s) | 807 |
| ScrFI | CCNGG | 3 cut(s) | 103, 430, 471 |
| SduI | GDGCHC | 2 cut(s) | 591, 796 |
| SfaNI | GCATC | 3 cut(s) | 352, 388, 465 |
| SfcI | CTRYAG | 2 cut(s) | 22, 380 |
| Sfr274I | CTCGAG | 1 cut(s) | 795 |
| SinI | GGWCC | 2 cut(s) | 79, 415 |
| SlaI | CTCGAG | 1 cut(s) | 795 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| SmlI | CTYRAG | 3 cut(s) | 402, 795, 803 |
| SmoI | CTYRAG | 3 cut(s) | 402, 795, 803 |
| Sse9I | AATT | 4 cut(s) | 446, 457, 499, 725 |
| SsiI | CCGC | 2 cut(s) | 110, 281 |
| StyD4I | CCNGG | 3 cut(s) | 101, 428, 469 |
| StyI | CCWWGG | 1 cut(s) | 740 |
| TaaI | ACNGT | 2 cut(s) | 376, 699 |
| TaqI | TCGA | 6 cut(s) | 74, 167, 235, 539, 562, 796 |
| TaqII | GACCGA | 1 cut(s) | 403 |
| TasI | AATT | 4 cut(s) | 446, 457, 499, 725 |
| TfiI | GAWTC | 2 cut(s) | 232, 529 |
| Tru1I | TTAA | 2 cut(s) | 435, 498 |
| Tru9I | TTAA | 2 cut(s) | 435, 498 |
| TscAI | CASTG | 2 cut(s) | 75, 307 |
| TseI | GCWGC | 2 cut(s) | 348, 379 |
| TspDTI | ATGAA | 2 cut(s) | 72, 197 |
| TspRI | CASTG | 2 cut(s) | 75, 307 |
| VpaK11BI | GGWCC | 2 cut(s) | 79, 415 |
| XapI | RAATTY | 1 cut(s) | 446 |
| XhoI | CTCGAG | 1 cut(s) | 795 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |