Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 453 |
| AciI | CCGC | 1 cut(s) | 405 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 34, 84 |
| AgsI | TTSAA | 4 cut(s) | 175, 233, 293, 386 |
| AjnI | CCWGG | 1 cut(s) | 68 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 260, 292 |
| AluBI | AGCT | 2 cut(s) | 382, 474 |
| AluI | AGCT | 2 cut(s) | 382, 474 |
| Alw26I | GTCTC | 2 cut(s) | 399, 428 |
| AoxI | GGCC | 2 cut(s) | 25, 402 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| AsuHPI | GGTGA | 2 cut(s) | 215, 464 |
| AsuNHI | GCTAGC | 1 cut(s) | 413 |
| AxyI | CCTNAGG | 1 cut(s) | 399 |
| BanII | GRGCYC | 1 cut(s) | 90 |
| BauI | CACGAG | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 2 cut(s) | 17, 55 |
| BceAI | ACGGC | 2 cut(s) | 62, 453 |
| BciT130I | CCWGG | 1 cut(s) | 70 |
| BcoDI | GTCTC | 2 cut(s) | 399, 428 |
| BfaI | CTAG | 4 cut(s) | 92, 140, 414, 475 |
| BfuAI | ACCTGC | 1 cut(s) | 453 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 410 |
| BisI | GCNGC | 2 cut(s) | 261, 405 |
| BlsI | GCNGC | 2 cut(s) | 262, 406 |
| Bme1390I | CCNGG | 1 cut(s) | 70 |
| BmiI | GGNNCC | 1 cut(s) | 89 |
| BmrFI | CCNGG | 1 cut(s) | 70 |
| BmsI | GCATC | 1 cut(s) | 328 |
| BmtI | GCTAGC | 1 cut(s) | 417 |
| Bsa29I | ATCGAT | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| BsaWI | WCCGGW | 2 cut(s) | 34, 225 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 379, 409 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 34, 84 |
| Bse21I | CCTNAGG | 1 cut(s) | 399 |
| Bse3DI | GCAATG | 1 cut(s) | 414 |
| BseBI | CCWGG | 1 cut(s) | 70 |
| BseCI | ATCGAT | 1 cut(s) | 213 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseGI | GGATG | 2 cut(s) | 66, 382 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 34, 84 |
| BseMI | GCAATG | 1 cut(s) | 414 |
| BseMII | CTCAG | 3 cut(s) | 20, 390, 444 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BshFI | GGCC | 2 cut(s) | 27, 404 |
| BshVI | ATCGAT | 1 cut(s) | 213 |
| BsiSI | CCGG | 2 cut(s) | 35, 226 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 34, 84 |
| BsmAI | GTCTC | 2 cut(s) | 399, 428 |
| BsmBI | CGTCTC | 1 cut(s) | 428 |
| BsmI | GAATGC | 1 cut(s) | 172 |
| BsnI | GGCC | 2 cut(s) | 27, 404 |
| Bsp1286I | GDGCHC | 1 cut(s) | 90 |
| Bsp143I | GATC | 2 cut(s) | 160, 210 |
| BspACI | CCGC | 1 cut(s) | 405 |
| BspANI | GGCC | 2 cut(s) | 27, 404 |
| BspCNI | CTCAG | 3 cut(s) | 21, 391, 443 |
| BspDI | ATCGAT | 1 cut(s) | 213 |
| BspHI | TCATGA | 1 cut(s) | 334 |
| BspLI | GGNNCC | 1 cut(s) | 89 |
| BspMI | ACCTGC | 1 cut(s) | 453 |
| BspOI | GCTAGC | 1 cut(s) | 417 |
| BsrDI | GCAATG | 1 cut(s) | 414 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 2 cut(s) | 160, 210 |
| BssSI | CACGAG | 1 cut(s) | 5 |
| Bst2BI | CACGAG | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 1 cut(s) | 415 |
| BstDEI | CTNAG | 4 cut(s) | 29, 390, 399, 430 |
| BstF5I | GGATG | 2 cut(s) | 66, 382 |
| BstKTI | GATC | 2 cut(s) | 163, 213 |
| BstMAI | GTCTC | 2 cut(s) | 399, 428 |
| BstMBI | GATC | 2 cut(s) | 160, 210 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 410 |
| BstNI | CCWGG | 1 cut(s) | 70 |
| BstSCI | CCNGG | 1 cut(s) | 68 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| Bsu15I | ATCGAT | 1 cut(s) | 213 |
| Bsu36I | CCTNAGG | 1 cut(s) | 399 |
| BsuRI | GGCC | 2 cut(s) | 27, 404 |
| BsuTUI | ATCGAT | 1 cut(s) | 213 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| BtsCI | GGATG | 2 cut(s) | 66, 382 |
| BtsI | GCAGTG | 1 cut(s) | 50 |
| BtsIMutI | CAGTG | 1 cut(s) | 50 |
| BveI | ACCTGC | 1 cut(s) | 453 |
| Cac8I | GCNNGC | 1 cut(s) | 415 |
| CciI | TCATGA | 1 cut(s) | 334 |
| ClaI | ATCGAT | 1 cut(s) | 213 |
| CviAII | CATG | 1 cut(s) | 335 |
| DdeI | CTNAG | 4 cut(s) | 29, 390, 399, 430 |
| DpnI | GATC | 2 cut(s) | 162, 212 |
| DpnII | GATC | 2 cut(s) | 160, 210 |
| Eco24I | GRGCYC | 1 cut(s) | 90 |
| Eco81I | CCTNAGG | 1 cut(s) | 399 |
| EcoRII | CCWGG | 1 cut(s) | 68 |
| EcoT38I | GRGCYC | 1 cut(s) | 90 |
| Esp3I | CGTCTC | 1 cut(s) | 428 |
| FaeI | CATG | 1 cut(s) | 338 |
| FaiI | YATR | 6 cut(s) | 21, 57, 147, 149, 336, 442 |
| FatI | CATG | 1 cut(s) | 334 |
| FauNDI | CATATG | 1 cut(s) | 147 |
| Fnu4HI | GCNGC | 2 cut(s) | 261, 405 |
| FokI | GGATG | 2 cut(s) | 73, 389 |
| FriOI | GRGCYC | 1 cut(s) | 90 |
| Fsp4HI | GCNGC | 2 cut(s) | 261, 405 |
| FspBI | CTAG | 4 cut(s) | 92, 140, 414, 475 |
| GluI | GCNGC | 2 cut(s) | 261, 405 |
| HaeIII | GGCC | 2 cut(s) | 27, 404 |
| HapII | CCGG | 2 cut(s) | 35, 226 |
| Hin1II | CATG | 1 cut(s) | 338 |
| HinfI | GANTC | 4 cut(s) | 31, 198, 229, 455 |
| HpaII | CCGG | 2 cut(s) | 35, 226 |
| HphI | GGTGA | 2 cut(s) | 215, 464 |
| Hpy188I | TCNGA | 2 cut(s) | 165, 433 |
| Hpy188III | TCNNGA | 3 cut(s) | 314, 335, 398 |
| HpyAV | CCTTC | 1 cut(s) | 235 |
| HpyCH4III | ACNGT | 1 cut(s) | 320 |
| HpyCH4IV | ACGT | 1 cut(s) | 236 |
| HpyCH4V | TGCA | 1 cut(s) | 55 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 410 |
| HpyF3I | CTNAG | 4 cut(s) | 29, 390, 399, 430 |
| HpySE526I | ACGT | 1 cut(s) | 236 |
| Hsp92II | CATG | 1 cut(s) | 338 |
| Kzo9I | GATC | 2 cut(s) | 160, 210 |
| LmnI | GCTCC | 1 cut(s) | 93 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| LweI | GCATC | 1 cut(s) | 328 |
| MaeI | CTAG | 4 cut(s) | 92, 140, 414, 475 |
| MaeII | ACGT | 1 cut(s) | 236 |
| MaeIII | GTNAC | 4 cut(s) | 150, 221, 314, 350 |
| MalI | GATC | 2 cut(s) | 162, 212 |
| MboI | GATC | 2 cut(s) | 160, 210 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MhlI | GDGCHC | 1 cut(s) | 90 |
| MluCI | AATT | 1 cut(s) | 275 |
| MlyI | GAGTC | 1 cut(s) | 40 |
| MnlI | CCTC | 3 cut(s) | 96, 394, 439 |
| MseI | TTAA | 1 cut(s) | 366 |
| MspI | CCGG | 2 cut(s) | 35, 226 |
| MspR9I | CCNGG | 1 cut(s) | 70 |
| Mva1269I | GAATGC | 1 cut(s) | 172 |
| MvaI | CCWGG | 1 cut(s) | 70 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 410 |
| NdeI | CATATG | 1 cut(s) | 147 |
| NdeII | GATC | 2 cut(s) | 160, 210 |
| NheI | GCTAGC | 1 cut(s) | 413 |
| NlaIII | CATG | 1 cut(s) | 338 |
| NlaIV | GGNNCC | 1 cut(s) | 89 |
| NmuCI | GTSAC | 3 cut(s) | 221, 314, 350 |
| PagI | TCATGA | 1 cut(s) | 334 |
| PctI | GAATGC | 1 cut(s) | 172 |
| PfeI | GAWTC | 3 cut(s) | 198, 229, 455 |
| PkrI | GCNGC | 2 cut(s) | 262, 406 |
| PleI | GAGTC | 1 cut(s) | 39 |
| PpsI | GAGTC | 1 cut(s) | 39 |
| Psp6I | CCWGG | 1 cut(s) | 68 |
| PspGI | CCWGG | 1 cut(s) | 68 |
| PspN4I | GGNNCC | 1 cut(s) | 89 |
| SaqAI | TTAA | 1 cut(s) | 366 |
| SatI | GCNGC | 2 cut(s) | 261, 405 |
| Sau3AI | GATC | 2 cut(s) | 160, 210 |
| SchI | GAGTC | 1 cut(s) | 40 |
| ScrFI | CCNGG | 1 cut(s) | 70 |
| SduI | GDGCHC | 1 cut(s) | 90 |
| SetI | ASST | 7 cut(s) | 71, 239, 246, 384, 431, 467, 476 |
| SfaNI | GCATC | 1 cut(s) | 328 |
| Sse9I | AATT | 1 cut(s) | 275 |
| SsiI | CCGC | 1 cut(s) | 405 |
| SspMI | CTAG | 4 cut(s) | 92, 140, 414, 475 |
| StyD4I | CCNGG | 1 cut(s) | 68 |
| TaaI | ACNGT | 1 cut(s) | 320 |
| TaiI | ACGT | 1 cut(s) | 239 |
| TaqI | TCGA | 1 cut(s) | 213 |
| TasI | AATT | 1 cut(s) | 275 |
| TauI | GCSGC | 1 cut(s) | 407 |
| TfiI | GAWTC | 3 cut(s) | 198, 229, 455 |
| Tru1I | TTAA | 1 cut(s) | 366 |
| Tru9I | TTAA | 1 cut(s) | 366 |
| TscAI | CASTG | 1 cut(s) | 57 |
| TseFI | GTSAC | 3 cut(s) | 221, 314, 350 |
| TseI | GCWGC | 1 cut(s) | 260 |
| Tsp45I | GTSAC | 3 cut(s) | 221, 314, 350 |
| TspDTI | ATGAA | 3 cut(s) | 123, 319, 323 |
| TspGWI | ACGGA | 1 cut(s) | 209 |
| TspRI | CASTG | 1 cut(s) | 57 |
| XspI | CTAG | 4 cut(s) | 92, 140, 414, 475 |