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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 73 |
| AciI | CCGC | 3 cut(s) | 73, 98, 470 |
| AclWI | GGATC | 2 cut(s) | 36, 590 |
| AcyI | GRCGYC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 175, 272, 319, 423, 549 |
| AjnI | CCWGG | 2 cut(s) | 93, 129 |
| AluBI | AGCT | 5 cut(s) | 68, 182, 226, 392, 548 |
| AluI | AGCT | 5 cut(s) | 68, 182, 226, 392, 548 |
| AlwI | GGATC | 2 cut(s) | 36, 590 |
| Ama87I | CYCGRG | 1 cut(s) | 242 |
| AoxI | GGCC | 5 cut(s) | 99, 358, 419, 475, 540 |
| ApeKI | GCWGC | 2 cut(s) | 68, 392 |
| AspLEI | GCGC | 2 cut(s) | 73, 79 |
| AspS9I | GGNCC | 1 cut(s) | 426 |
| AsuC2I | CCSGG | 4 cut(s) | 170, 243, 244, 418 |
| AsuHPI | GGTGA | 1 cut(s) | 494 |
| AsuII | TTCGAA | 1 cut(s) | 533 |
| AvaI | CYCGRG | 1 cut(s) | 242 |
| AvaII | GGWCC | 1 cut(s) | 426 |
| BanII | GRGCYC | 1 cut(s) | 418 |
| BbsI | GAAGAC | 2 cut(s) | 245, 353 |
| BbvI | GCAGC | 2 cut(s) | 55, 379 |
| BccI | CCATC | 1 cut(s) | 565 |
| BciT130I | CCWGG | 2 cut(s) | 95, 131 |
| BcnI | CCSGG | 4 cut(s) | 170, 243, 244, 418 |
| BfaI | CTAG | 2 cut(s) | 44, 161 |
| BfmI | CTRYAG | 2 cut(s) | 393, 516 |
| BfoI | RGCGCY | 1 cut(s) | 80 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 170 |
| BisI | GCNGC | 3 cut(s) | 69, 99, 393 |
| BlsI | GCNGC | 3 cut(s) | 70, 100, 394 |
| Bme1390I | CCNGG | 6 cut(s) | 95, 131, 170, 243, 244, 418 |
| Bme18I | GGWCC | 1 cut(s) | 426 |
| BmeT110I | CYCGRG | 1 cut(s) | 242 |
| BmgT120I | GGNCC | 1 cut(s) | 426 |
| BmiI | GGNNCC | 2 cut(s) | 92, 415 |
| BmrFI | CCNGG | 6 cut(s) | 95, 131, 170, 243, 244, 418 |
| BpiI | GAAGAC | 2 cut(s) | 245, 353 |
| Bpu10I | CCTNAGC | 1 cut(s) | 544 |
| Bpu14I | TTCGAA | 1 cut(s) | 533 |
| BpuMI | CCSGG | 4 cut(s) | 170, 243, 244, 418 |
| BsaHI | GRCGYC | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 4 cut(s) | 242, 422, 478, 624 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 566, 596 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 175, 272, 319, 423, 549 |
| BseBI | CCWGG | 2 cut(s) | 95, 131 |
| BseDI | CCNNGG | 4 cut(s) | 242, 422, 478, 624 |
| BseGI | GGATG | 4 cut(s) | 67, 562, 576, 640 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 175, 272, 319, 423, 549 |
| BseMII | CTCAG | 1 cut(s) | 71 |
| BseRI | GAGGAG | 1 cut(s) | 590 |
| BseXI | GCAGC | 2 cut(s) | 55, 379 |
| BseYI | CCCAGC | 1 cut(s) | 548 |
| Bsh1236I | CGCG | 1 cut(s) | 73 |
| BshFI | GGCC | 5 cut(s) | 101, 360, 421, 477, 542 |
| BsiHKCI | CYCGRG | 1 cut(s) | 242 |
| BsiSI | CCGG | 3 cut(s) | 170, 243, 418 |
| BslFI | GGGAC | 1 cut(s) | 572 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 175, 272, 319, 423, 549 |
| BsmFI | GGGAC | 1 cut(s) | 572 |
| BsmI | GAATGC | 1 cut(s) | 456 |
| BsnI | GGCC | 5 cut(s) | 101, 360, 421, 477, 542 |
| BsoBI | CYCGRG | 1 cut(s) | 242 |
| Bsp119I | TTCGAA | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 1 cut(s) | 418 |
| Bsp143I | GATC | 3 cut(s) | 28, 40, 595 |
| BspACI | CCGC | 3 cut(s) | 73, 98, 470 |
| BspANI | GGCC | 5 cut(s) | 101, 360, 421, 477, 542 |
| BspCNI | CTCAG | 1 cut(s) | 70 |
| BspFNI | CGCG | 1 cut(s) | 73 |
| BspHI | TCATGA | 1 cut(s) | 286 |
| BspLI | GGNNCC | 2 cut(s) | 92, 415 |
| BspMAI | CTGCAG | 1 cut(s) | 397 |
| BspPI | GGATC | 2 cut(s) | 36, 590 |
| BspT104I | TTCGAA | 1 cut(s) | 533 |
| BssECI | CCNNGG | 4 cut(s) | 242, 422, 478, 624 |
| BssMI | GATC | 3 cut(s) | 28, 40, 595 |
| BssNI | GRCGYC | 1 cut(s) | 134 |
| BssT1I | CCWWGG | 2 cut(s) | 478, 624 |
| Bst2UI | CCWGG | 2 cut(s) | 95, 131 |
| Bst6I | CTCTTC | 1 cut(s) | 440 |
| BstACI | GRCGYC | 1 cut(s) | 134 |
| BstBI | TTCGAA | 1 cut(s) | 533 |
| BstC8I | GCNNGC | 2 cut(s) | 75, 228 |
| BstDEI | CTNAG | 2 cut(s) | 57, 544 |
| BstF5I | GGATG | 4 cut(s) | 67, 562, 576, 640 |
| BstFNI | CGCG | 1 cut(s) | 73 |
| BstH2I | RGCGCY | 1 cut(s) | 80 |
| BstHHI | GCGC | 2 cut(s) | 73, 79 |
| BstKTI | GATC | 3 cut(s) | 31, 43, 598 |
| BstMBI | GATC | 3 cut(s) | 28, 40, 595 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 74, 170, 179, 232 |
| BstNI | CCWGG | 2 cut(s) | 95, 131 |
| BstSCI | CCNGG | 6 cut(s) | 93, 129, 168, 241, 242, 416 |
| BstSFI | CTRYAG | 2 cut(s) | 393, 516 |
| BstUI | CGCG | 1 cut(s) | 73 |
| BstV1I | GCAGC | 2 cut(s) | 55, 379 |
| BstV2I | GAAGAC | 2 cut(s) | 245, 353 |
| BstX2I | RGATCY | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 28 |
| BsuRI | GGCC | 5 cut(s) | 101, 360, 421, 477, 542 |
| BtsCI | GGATG | 4 cut(s) | 67, 562, 576, 640 |
| Cac8I | GCNNGC | 2 cut(s) | 75, 228 |
| CciI | TCATGA | 1 cut(s) | 286 |
| CfoI | GCGC | 2 cut(s) | 73, 79 |
| Cfr13I | GGNCC | 1 cut(s) | 426 |
| Cfr9I | CCCGGG | 1 cut(s) | 242 |
| CseI | GACGC | 2 cut(s) | 123, 239 |
| CviAII | CATG | 2 cut(s) | 287, 562 |
| DdeI | CTNAG | 2 cut(s) | 57, 544 |
| DpnI | GATC | 3 cut(s) | 30, 42, 597 |
| DpnII | GATC | 3 cut(s) | 28, 40, 595 |
| Eam1104I | CTCTTC | 1 cut(s) | 440 |
| EarI | CTCTTC | 1 cut(s) | 440 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Eco130I | CCWWGG | 2 cut(s) | 478, 624 |
| Eco147I | AGGCCT | 1 cut(s) | 542 |
| Eco24I | GRGCYC | 1 cut(s) | 418 |
| Eco47I | GGWCC | 1 cut(s) | 426 |
| Eco88I | CYCGRG | 1 cut(s) | 242 |
| EcoRII | CCWGG | 2 cut(s) | 93, 129 |
| EcoT14I | CCWWGG | 2 cut(s) | 478, 624 |
| EcoT38I | GRGCYC | 1 cut(s) | 418 |
| ErhI | CCWWGG | 2 cut(s) | 478, 624 |
| FaeI | CATG | 2 cut(s) | 290, 565 |
| FaiI | YATR | 4 cut(s) | 210, 288, 503, 563 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 15, 47, 140, 172 |
| FaqI | GGGAC | 1 cut(s) | 572 |
| FatI | CATG | 2 cut(s) | 286, 561 |
| FauI | CCCGC | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 99, 393 |
| FokI | GGATG | 4 cut(s) | 74, 569, 583, 647 |
| FriOI | GRGCYC | 1 cut(s) | 418 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 99, 393 |
| FspBI | CTAG | 2 cut(s) | 44, 161 |
| GlaI | GCGC | 2 cut(s) | 72, 78 |
| GluI | GCNGC | 3 cut(s) | 69, 99, 393 |
| GsaI | CCCAGC | 1 cut(s) | 552 |
| HaeII | RGCGCY | 1 cut(s) | 80 |
| HaeIII | GGCC | 5 cut(s) | 101, 360, 421, 477, 542 |
| HapII | CCGG | 3 cut(s) | 170, 243, 418 |
| HgaI | GACGC | 2 cut(s) | 123, 239 |
| HhaI | GCGC | 2 cut(s) | 73, 79 |
| Hin1I | GRCGYC | 1 cut(s) | 134 |
| Hin1II | CATG | 2 cut(s) | 290, 565 |
| Hin6I | GCGC | 2 cut(s) | 71, 77 |
| HinP1I | GCGC | 2 cut(s) | 71, 77 |
| HinfI | GANTC | 2 cut(s) | 55, 463 |
| HpaII | CCGG | 3 cut(s) | 170, 243, 418 |
| HphI | GGTGA | 1 cut(s) | 494 |
| Hpy188I | TCNGA | 3 cut(s) | 54, 117, 444 |
| Hpy188III | TCNNGA | 3 cut(s) | 59, 287, 593 |
| HpyAV | CCTTC | 7 cut(s) | 145, 371, 394, 430, 467, 547, 604 |
| HpyCH4V | TGCA | 1 cut(s) | 395 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 74, 170, 179, 232 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 134 |
| Hsp92II | CATG | 2 cut(s) | 290, 565 |
| HspAI | GCGC | 2 cut(s) | 71, 77 |
| Kzo9I | GATC | 3 cut(s) | 28, 40, 595 |
| LmnI | GCTCC | 1 cut(s) | 413 |
| Lsp1109I | GCAGC | 2 cut(s) | 55, 379 |
| MaeI | CTAG | 2 cut(s) | 44, 161 |
| MaeIII | GTNAC | 1 cut(s) | 637 |
| MalI | GATC | 3 cut(s) | 30, 42, 597 |
| MboI | GATC | 3 cut(s) | 28, 40, 595 |
| MboII | GAAGA | 5 cut(s) | 160, 245, 302, 358, 457 |
| MflI | RGATCY | 1 cut(s) | 28 |
| MhlI | GDGCHC | 1 cut(s) | 418 |
| MluCI | AATT | 2 cut(s) | 458, 619 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MmeI | TCCRAC | 2 cut(s) | 156, 422 |
| MseI | TTAA | 1 cut(s) | 81 |
| MslI | CAYNNNNRTG | 1 cut(s) | 506 |
| MspI | CCGG | 3 cut(s) | 170, 243, 418 |
| MspR9I | CCNGG | 6 cut(s) | 95, 131, 170, 243, 244, 418 |
| Mva1269I | GAATGC | 1 cut(s) | 456 |
| MvaI | CCWGG | 2 cut(s) | 95, 131 |
| MvnI | CGCG | 1 cut(s) | 73 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 74, 170, 179, 232 |
| NciI | CCSGG | 4 cut(s) | 170, 243, 244, 418 |
| NdeII | GATC | 3 cut(s) | 28, 40, 595 |
| NlaIII | CATG | 2 cut(s) | 290, 565 |
| NlaIV | GGNNCC | 2 cut(s) | 92, 415 |
| NmeAIII | GCCGAG | 1 cut(s) | 336 |
| NmuCI | GTSAC | 1 cut(s) | 637 |
| NspV | TTCGAA | 1 cut(s) | 533 |
| PagI | TCATGA | 1 cut(s) | 286 |
| PceI | AGGCCT | 1 cut(s) | 542 |
| PctI | GAATGC | 1 cut(s) | 456 |
| PfeI | GAWTC | 1 cut(s) | 463 |
| PkrI | GCNGC | 3 cut(s) | 70, 100, 394 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 2 cut(s) | 93, 129 |
| PspFI | CCCAGC | 1 cut(s) | 548 |
| PspGI | CCWGG | 2 cut(s) | 93, 129 |
| PspN4I | GGNNCC | 2 cut(s) | 92, 415 |
| PspPI | GGNCC | 1 cut(s) | 426 |
| PstI | CTGCAG | 1 cut(s) | 397 |
| PsuI | RGATCY | 1 cut(s) | 28 |
| RseI | CAYNNNNRTG | 1 cut(s) | 506 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| SatI | GCNGC | 3 cut(s) | 69, 99, 393 |
| Sau3AI | GATC | 3 cut(s) | 28, 40, 595 |
| Sau96I | GGNCC | 1 cut(s) | 426 |
| SchI | GAGTC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 6 cut(s) | 95, 131, 170, 243, 244, 418 |
| SduI | GDGCHC | 1 cut(s) | 418 |
| SfcI | CTRYAG | 2 cut(s) | 393, 516 |
| SfuI | TTCGAA | 1 cut(s) | 533 |
| SinI | GGWCC | 1 cut(s) | 426 |
| SmaI | CCCGGG | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 506 |
| Sse9I | AATT | 2 cut(s) | 458, 619 |
| SseBI | AGGCCT | 1 cut(s) | 542 |
| SsiI | CCGC | 3 cut(s) | 73, 98, 470 |
| SspMI | CTAG | 2 cut(s) | 44, 161 |
| StuI | AGGCCT | 1 cut(s) | 542 |
| StyD4I | CCNGG | 6 cut(s) | 93, 129, 168, 241, 242, 416 |
| StyI | CCWWGG | 2 cut(s) | 478, 624 |
| TaqI | TCGA | 3 cut(s) | 146, 374, 533 |
| TaqII | GACCGA | 1 cut(s) | 414 |
| TasI | AATT | 2 cut(s) | 458, 619 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 463 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 637 |
| TseI | GCWGC | 2 cut(s) | 68, 392 |
| Tsp45I | GTSAC | 1 cut(s) | 637 |
| TspDTI | ATGAA | 4 cut(s) | 17, 275, 303, 483 |
| TspMI | CCCGGG | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 426 |
| XmaI | CCCGGG | 1 cut(s) | 242 |
| XspI | CTAG | 2 cut(s) | 44, 161 |