Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HCMV_UL139 | PF12507 | 21 - 140 | 3.8e-22 | Human Cytomegalovirus UL139 protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 223 |
| AccII | CGCG | 1 cut(s) | 179 |
| AciI | CCGC | 4 cut(s) | 77, 151, 179, 223 |
| AclWI | GGATC | 1 cut(s) | 48 |
| AcsI | RAATTY | 2 cut(s) | 403, 446 |
| AcuI | CTGAAG | 1 cut(s) | 575 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 76 |
| AgsI | TTSAA | 5 cut(s) | 121, 193, 271, 409, 452 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| Alw26I | GTCTC | 2 cut(s) | 65, 108 |
| AlwI | GGATC | 1 cut(s) | 48 |
| AoxI | GGCC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 4 cut(s) | 148, 488, 491, 586 |
| ApoI | RAATTY | 2 cut(s) | 403, 446 |
| AspLEI | GCGC | 2 cut(s) | 7, 205 |
| AspS9I | GGNCC | 1 cut(s) | 181 |
| AsuHPI | GGTGA | 3 cut(s) | 44, 340, 547 |
| BanII | GRGCYC | 1 cut(s) | 574 |
| BbvI | GCAGC | 4 cut(s) | 160, 475, 503, 598 |
| BccI | CCATC | 2 cut(s) | 106, 136 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BcoDI | GTCTC | 2 cut(s) | 65, 108 |
| BfmI | CTRYAG | 2 cut(s) | 489, 617 |
| BfoI | RGCGCY | 2 cut(s) | 8, 206 |
| BglII | AGATCT | 1 cut(s) | 195 |
| BisI | GCNGC | 6 cut(s) | 149, 180, 224, 489, 492, 587 |
| BlsI | GCNGC | 6 cut(s) | 150, 181, 225, 490, 493, 588 |
| Bme1390I | CCNGG | 1 cut(s) | 74 |
| BmgT120I | GGNCC | 1 cut(s) | 181 |
| BmrFI | CCNGG | 1 cut(s) | 74 |
| BpmI | CTGGAG | 2 cut(s) | 56, 185 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaWI | WCCGGW | 1 cut(s) | 207 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 101, 131, 137, 167 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 76 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 76 |
| BseMII | CTCAG | 3 cut(s) | 119, 486, 501 |
| BseRI | GAGGAG | 2 cut(s) | 59, 299 |
| BseXI | GCAGC | 4 cut(s) | 160, 475, 503, 598 |
| Bsh1236I | CGCG | 1 cut(s) | 179 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 76 |
| BsmAI | GTCTC | 2 cut(s) | 65, 108 |
| BsmBI | CGTCTC | 1 cut(s) | 65 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bsp1286I | GDGCHC | 1 cut(s) | 574 |
| Bsp143I | GATC | 3 cut(s) | 40, 174, 195 |
| BspACI | CCGC | 4 cut(s) | 77, 151, 179, 223 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspCNI | CTCAG | 3 cut(s) | 118, 487, 502 |
| BspFNI | CGCG | 1 cut(s) | 179 |
| BspMAI | CTGCAG | 2 cut(s) | 493, 621 |
| BspPI | GGATC | 1 cut(s) | 48 |
| BsrBI | CCGCTC | 1 cut(s) | 223 |
| BssMI | GATC | 3 cut(s) | 40, 174, 195 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 2 cut(s) | 479, 598 |
| Bst6I | CTCTTC | 3 cut(s) | 266, 494, 525 |
| BstC8I | GCNNGC | 4 cut(s) | 93, 126, 130, 549 |
| BstDEI | CTNAG | 3 cut(s) | 105, 495, 510 |
| BstFNI | CGCG | 1 cut(s) | 179 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 206 |
| BstHHI | GCGC | 2 cut(s) | 7, 205 |
| BstKTI | GATC | 3 cut(s) | 43, 177, 198 |
| BstMAI | GTCTC | 2 cut(s) | 65, 108 |
| BstMBI | GATC | 3 cut(s) | 40, 174, 195 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 586 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstSCI | CCNGG | 1 cut(s) | 72 |
| BstSFI | CTRYAG | 2 cut(s) | 489, 617 |
| BstUI | CGCG | 1 cut(s) | 179 |
| BstV1I | GCAGC | 4 cut(s) | 160, 475, 503, 598 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtgZI | GCGATG | 1 cut(s) | 155 |
| BtsIMutI | CAGTG | 1 cut(s) | 463 |
| Cac8I | GCNNGC | 4 cut(s) | 93, 126, 130, 549 |
| CfoI | GCGC | 2 cut(s) | 7, 205 |
| Cfr13I | GGNCC | 1 cut(s) | 181 |
| CseI | GACGC | 1 cut(s) | 239 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 423, 458 |
| CviAII | CATG | 2 cut(s) | 37, 133 |
| DdeI | CTNAG | 3 cut(s) | 105, 495, 510 |
| DpnI | GATC | 3 cut(s) | 42, 176, 197 |
| DpnII | GATC | 3 cut(s) | 40, 174, 195 |
| Eam1104I | CTCTTC | 3 cut(s) | 266, 494, 525 |
| EarI | CTCTTC | 3 cut(s) | 266, 494, 525 |
| EciI | GGCGGA | 1 cut(s) | 92 |
| Eco24I | GRGCYC | 1 cut(s) | 574 |
| Eco32I | GATATC | 1 cut(s) | 217 |
| Eco57I | CTGAAG | 1 cut(s) | 575 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| EcoRV | GATATC | 1 cut(s) | 217 |
| EcoT38I | GRGCYC | 1 cut(s) | 574 |
| Esp3I | CGTCTC | 1 cut(s) | 65 |
| FaeI | CATG | 2 cut(s) | 40, 136 |
| FaiI | YATR | 5 cut(s) | 38, 134, 324, 524, 628 |
| FatI | CATG | 2 cut(s) | 36, 132 |
| Fnu4HI | GCNGC | 6 cut(s) | 149, 180, 224, 489, 492, 587 |
| FriOI | GRGCYC | 1 cut(s) | 574 |
| Fsp4HI | GCNGC | 6 cut(s) | 149, 180, 224, 489, 492, 587 |
| GlaI | GCGC | 2 cut(s) | 6, 204 |
| GluI | GCNGC | 6 cut(s) | 149, 180, 224, 489, 492, 587 |
| GsuI | CTGGAG | 2 cut(s) | 56, 185 |
| HaeII | RGCGCY | 2 cut(s) | 8, 206 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| HapII | CCGG | 1 cut(s) | 208 |
| HgaI | GACGC | 1 cut(s) | 239 |
| HhaI | GCGC | 2 cut(s) | 7, 205 |
| Hin1II | CATG | 2 cut(s) | 40, 136 |
| Hin6I | GCGC | 2 cut(s) | 5, 203 |
| HinP1I | GCGC | 2 cut(s) | 5, 203 |
| HindIII | AAGCTT | 3 cut(s) | 122, 187, 436 |
| HinfI | GANTC | 2 cut(s) | 27, 86 |
| HpaII | CCGG | 1 cut(s) | 208 |
| HphI | GGTGA | 3 cut(s) | 44, 340, 547 |
| Hpy166II | GTNNAC | 1 cut(s) | 538 |
| Hpy188I | TCNGA | 3 cut(s) | 214, 511, 594 |
| Hpy188III | TCNNGA | 3 cut(s) | 20, 107, 193 |
| Hpy8I | GTNNAC | 1 cut(s) | 538 |
| Hpy99I | CGWCG | 1 cut(s) | 233 |
| HpyAV | CCTTC | 4 cut(s) | 325, 340, 520, 616 |
| HpyCH4III | ACNGT | 2 cut(s) | 479, 598 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 5 cut(s) | 394, 468, 491, 580, 619 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 586 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 495, 510 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| Hsp92II | CATG | 2 cut(s) | 40, 136 |
| HspAI | GCGC | 2 cut(s) | 5, 203 |
| Kzo9I | GATC | 3 cut(s) | 40, 174, 195 |
| LmnI | GCTCC | 5 cut(s) | 145, 166, 210, 286, 335 |
| Lsp1109I | GCAGC | 4 cut(s) | 160, 475, 503, 598 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 4 cut(s) | 20, 50, 458, 473 |
| MalI | GATC | 3 cut(s) | 42, 176, 197 |
| MbiI | CCGCTC | 1 cut(s) | 223 |
| MboI | GATC | 3 cut(s) | 40, 174, 195 |
| MboII | GAAGA | 5 cut(s) | 184, 283, 421, 511, 542 |
| MfeI | CAATTG | 2 cut(s) | 389, 463 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MhlI | GDGCHC | 1 cut(s) | 574 |
| MluCI | AATT | 7 cut(s) | 257, 389, 403, 446, 463, 556, 603 |
| MlyI | GAGTC | 1 cut(s) | 21 |
| MseI | TTAA | 2 cut(s) | 354, 429 |
| MspA1I | CMGCKG | 2 cut(s) | 151, 494 |
| MspI | CCGG | 1 cut(s) | 208 |
| MspR9I | CCNGG | 1 cut(s) | 74 |
| MunI | CAATTG | 2 cut(s) | 389, 463 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MvnI | CGCG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 586 |
| NdeII | GATC | 3 cut(s) | 40, 174, 195 |
| NlaIII | CATG | 2 cut(s) | 40, 136 |
| NmuCI | GTSAC | 3 cut(s) | 20, 50, 458 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 55, 225 |
| PfeI | GAWTC | 1 cut(s) | 86 |
| PkrI | GCNGC | 6 cut(s) | 150, 181, 225, 490, 493, 588 |
| PleI | GAGTC | 1 cut(s) | 21 |
| PpsI | GAGTC | 1 cut(s) | 21 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspPI | GGNCC | 1 cut(s) | 181 |
| PstI | CTGCAG | 2 cut(s) | 493, 621 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PvuII | CAGCTG | 1 cut(s) | 494 |
| SaqAI | TTAA | 2 cut(s) | 354, 429 |
| SatI | GCNGC | 6 cut(s) | 149, 180, 224, 489, 492, 587 |
| Sau3AI | GATC | 3 cut(s) | 40, 174, 195 |
| Sau96I | GGNCC | 1 cut(s) | 181 |
| SchI | GAGTC | 1 cut(s) | 21 |
| ScrFI | CCNGG | 1 cut(s) | 74 |
| SduI | GDGCHC | 1 cut(s) | 574 |
| SfcI | CTRYAG | 2 cut(s) | 489, 617 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| Sse9I | AATT | 7 cut(s) | 257, 389, 403, 446, 463, 556, 603 |
| SsiI | CCGC | 4 cut(s) | 77, 151, 179, 223 |
| StyD4I | CCNGG | 1 cut(s) | 72 |
| TaaI | ACNGT | 2 cut(s) | 479, 598 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 3 cut(s) | 30, 219, 228 |
| TaqII | GACCGA | 1 cut(s) | 39 |
| TasI | AATT | 7 cut(s) | 257, 389, 403, 446, 463, 556, 603 |
| TauI | GCSGC | 2 cut(s) | 182, 226 |
| TfiI | GAWTC | 1 cut(s) | 86 |
| Tru1I | TTAA | 2 cut(s) | 354, 429 |
| Tru9I | TTAA | 2 cut(s) | 354, 429 |
| TscAI | CASTG | 1 cut(s) | 463 |
| TseFI | GTSAC | 3 cut(s) | 20, 50, 458 |
| TseI | GCWGC | 4 cut(s) | 148, 488, 491, 586 |
| Tsp45I | GTSAC | 3 cut(s) | 20, 50, 458 |
| TspDTI | ATGAA | 2 cut(s) | 359, 539 |
| TspRI | CASTG | 1 cut(s) | 463 |
| XapI | RAATTY | 2 cut(s) | 403, 446 |