Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 92 |
| AccB1I | GGYRCC | 3 cut(s) | 92, 919, 1021 |
| AccI | GTMKAC | 1 cut(s) | 328 |
| AciI | CCGC | 5 cut(s) | 48, 305, 416, 549, 623 |
| AclI | AACGTT | 1 cut(s) | 437 |
| AclWI | GGATC | 4 cut(s) | 127, 156, 685, 1008 |
| AcoI | YGGCCR | 1 cut(s) | 639 |
| AcvI | CACGTG | 1 cut(s) | 754 |
| AfaI | GTAC | 4 cut(s) | 64, 94, 463, 708 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 439, 841, 842, 1068 |
| AgsI | TTSAA | 4 cut(s) | 88, 105, 479, 1055 |
| AjiI | CACGTC | 1 cut(s) | 722 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 980, 1012 |
| AluBI | AGCT | 5 cut(s) | 10, 43, 341, 645, 739 |
| AluI | AGCT | 5 cut(s) | 10, 43, 341, 645, 739 |
| Alw21I | GWGCWC | 1 cut(s) | 196 |
| Alw26I | GTCTC | 2 cut(s) | 287, 557 |
| AlwI | GGATC | 4 cut(s) | 127, 156, 685, 1008 |
| Ama87I | CYCGRG | 1 cut(s) | 841 |
| AoxI | GGCC | 4 cut(s) | 72, 620, 639, 831 |
| ApeKI | GCWGC | 7 cut(s) | 40, 341, 769, 968, 1046, 1132, 1135 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 533 |
| Asp718I | GGTACC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 3 cut(s) | 72, 206, 832 |
| AsuHPI | GGTGA | 1 cut(s) | 422 |
| AsuII | TTCGAA | 2 cut(s) | 616, 1034 |
| AvaI | CYCGRG | 1 cut(s) | 841 |
| AvaII | GGWCC | 1 cut(s) | 206 |
| BalI | TGGCCA | 1 cut(s) | 641 |
| BanI | GGYRCC | 3 cut(s) | 92, 919, 1021 |
| BanII | GRGCYC | 2 cut(s) | 263, 799 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 85, 117 |
| BbrPI | CACGTG | 1 cut(s) | 754 |
| Bbv12I | GWGCWC | 1 cut(s) | 196 |
| BbvI | GCAGC | 7 cut(s) | 52, 328, 781, 955, 1033, 1119, 1147 |
| BccI | CCATC | 4 cut(s) | 245, 575, 631, 931 |
| BceAI | ACGGC | 2 cut(s) | 59, 411 |
| BciVI | GTATCC | 1 cut(s) | 436 |
| BclI | TGATCA | 3 cut(s) | 169, 378, 388 |
| BcoDI | GTCTC | 2 cut(s) | 287, 557 |
| BfaI | CTAG | 2 cut(s) | 137, 681 |
| BfmI | CTRYAG | 3 cut(s) | 217, 538, 1133 |
| BfuI | GTATCC | 1 cut(s) | 436 |
| BisI | GCNGC | 8 cut(s) | 41, 342, 623, 770, 969, 1047, 1133, 1136 |
| BlsI | GCNGC | 8 cut(s) | 42, 343, 624, 771, 970, 1048, 1134, 1137 |
| Bme18I | GGWCC | 1 cut(s) | 206 |
| BmeT110I | CYCGRG | 1 cut(s) | 841 |
| BmgBI | CACGTC | 1 cut(s) | 722 |
| BmgT120I | GGNCC | 3 cut(s) | 72, 206, 832 |
| BmiI | GGNNCC | 6 cut(s) | 94, 361, 796, 834, 921, 1023 |
| BmrI | ACTGGG | 1 cut(s) | 890 |
| BmsI | GCATC | 5 cut(s) | 130, 219, 556, 715, 812 |
| BmuI | ACTGGG | 1 cut(s) | 890 |
| Bpu14I | TTCGAA | 2 cut(s) | 616, 1034 |
| BsaAI | YACGTR | 2 cut(s) | 731, 754 |
| BsaI | GGTCTC | 1 cut(s) | 557 |
| BsaJI | CCNNGG | 5 cut(s) | 199, 209, 570, 915, 1062 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 439, 841, 842, 1068 |
| Bse118I | RCCGGY | 2 cut(s) | 319, 625 |
| Bse1I | ACTGG | 3 cut(s) | 64, 163, 885 |
| BseDI | CCNNGG | 5 cut(s) | 199, 209, 570, 915, 1062 |
| BseGI | GGATG | 3 cut(s) | 57, 474, 923 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 439, 841, 842, 1068 |
| BseMII | CTCAG | 2 cut(s) | 687, 1089 |
| BseNI | ACTGG | 3 cut(s) | 64, 163, 885 |
| BseRI | GAGGAG | 1 cut(s) | 620 |
| BseXI | GCAGC | 7 cut(s) | 52, 328, 781, 955, 1033, 1119, 1147 |
| BsgI | GTGCAG | 1 cut(s) | 788 |
| Bsh1285I | CGRYCG | 1 cut(s) | 495 |
| BshFI | GGCC | 4 cut(s) | 74, 622, 641, 833 |
| BshNI | GGYRCC | 3 cut(s) | 92, 919, 1021 |
| BsiEI | CGRYCG | 1 cut(s) | 495 |
| BsiHKAI | GWGCWC | 1 cut(s) | 196 |
| BsiHKCI | CYCGRG | 1 cut(s) | 841 |
| BsiSI | CCGG | 2 cut(s) | 320, 626 |
| BslFI | GGGAC | 2 cut(s) | 260, 732 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 439, 841, 842, 1068 |
| BsmAI | GTCTC | 2 cut(s) | 287, 557 |
| BsmFI | GGGAC | 2 cut(s) | 260, 732 |
| BsnI | GGCC | 4 cut(s) | 74, 622, 641, 833 |
| Bso31I | GGTCTC | 1 cut(s) | 557 |
| BsoBI | CYCGRG | 1 cut(s) | 841 |
| Bsp119I | TTCGAA | 2 cut(s) | 616, 1034 |
| Bsp1286I | GDGCHC | 3 cut(s) | 196, 263, 799 |
| Bsp19I | CCATGG | 3 cut(s) | 199, 570, 915 |
| BspACI | CCGC | 5 cut(s) | 48, 305, 416, 549, 623 |
| BspANI | GGCC | 4 cut(s) | 74, 622, 641, 833 |
| BspCNI | CTCAG | 2 cut(s) | 686, 1090 |
| BspLI | GGNNCC | 6 cut(s) | 94, 361, 796, 834, 921, 1023 |
| BspMAI | CTGCAG | 2 cut(s) | 542, 1137 |
| BspPI | GGATC | 4 cut(s) | 127, 156, 685, 1008 |
| BspQI | GCTCTTC | 1 cut(s) | 405 |
| BspT104I | TTCGAA | 2 cut(s) | 616, 1034 |
| BspT107I | GGYRCC | 3 cut(s) | 92, 919, 1021 |
| BspTNI | GGTCTC | 1 cut(s) | 557 |
| BsrFI | RCCGGY | 2 cut(s) | 319, 625 |
| BsrI | ACTGG | 3 cut(s) | 64, 163, 885 |
| BssAI | RCCGGY | 2 cut(s) | 319, 625 |
| BssECI | CCNNGG | 5 cut(s) | 199, 209, 570, 915, 1062 |
| BssT1I | CCWWGG | 4 cut(s) | 199, 570, 915, 1062 |
| Bst4CI | ACNGT | 1 cut(s) | 191 |
| Bst6I | CTCTTC | 2 cut(s) | 405, 1099 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 546, 778 |
| BstBAI | YACGTR | 2 cut(s) | 731, 754 |
| BstBI | TTCGAA | 2 cut(s) | 616, 1034 |
| BstC8I | GCNNGC | 2 cut(s) | 627, 643 |
| BstDEI | CTNAG | 4 cut(s) | 501, 673, 1098, 1167 |
| BstDSI | CCRYGG | 4 cut(s) | 199, 209, 570, 915 |
| BstF5I | GGATG | 3 cut(s) | 57, 474, 923 |
| BstMAI | GTCTC | 2 cut(s) | 287, 557 |
| BstMCI | CGRYCG | 1 cut(s) | 495 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 37, 546, 619, 778 |
| BstSFI | CTRYAG | 3 cut(s) | 217, 538, 1133 |
| BstV1I | GCAGC | 7 cut(s) | 52, 328, 781, 955, 1033, 1119, 1147 |
| BstX2I | RGATCY | 2 cut(s) | 677, 1000 |
| BstYI | RGATCY | 2 cut(s) | 677, 1000 |
| BsuI | GTATCC | 1 cut(s) | 436 |
| BsuRI | GGCC | 4 cut(s) | 74, 622, 641, 833 |
| BtgI | CCRYGG | 4 cut(s) | 199, 209, 570, 915 |
| BtgZI | GCGATG | 1 cut(s) | 650 |
| BtrI | CACGTC | 1 cut(s) | 722 |
| BtsCI | GGATG | 3 cut(s) | 57, 474, 923 |
| BtsIMutI | CAGTG | 1 cut(s) | 57 |
| Cac8I | GCNNGC | 2 cut(s) | 627, 643 |
| Cfr10I | RCCGGY | 2 cut(s) | 319, 625 |
| Cfr13I | GGNCC | 3 cut(s) | 72, 206, 832 |
| Csp6I | GTAC | 4 cut(s) | 63, 93, 462, 707 |
| CviQI | GTAC | 4 cut(s) | 63, 93, 462, 707 |
| DdeI | CTNAG | 4 cut(s) | 501, 673, 1098, 1167 |
| EaeI | YGGCCR | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 2 cut(s) | 405, 1099 |
| EarI | CTCTTC | 2 cut(s) | 405, 1099 |
| EciI | GGCGGA | 1 cut(s) | 431 |
| Eco130I | CCWWGG | 4 cut(s) | 199, 570, 915, 1062 |
| Eco24I | GRGCYC | 2 cut(s) | 263, 799 |
| Eco31I | GGTCTC | 1 cut(s) | 557 |
| Eco32I | GATATC | 1 cut(s) | 1079 |
| Eco47I | GGWCC | 1 cut(s) | 206 |
| Eco72I | CACGTG | 1 cut(s) | 754 |
| Eco88I | CYCGRG | 1 cut(s) | 841 |
| EcoRV | GATATC | 1 cut(s) | 1079 |
| EcoT14I | CCWWGG | 4 cut(s) | 199, 570, 915, 1062 |
| EcoT22I | ATGCAT | 1 cut(s) | 805 |
| EcoT38I | GRGCYC | 2 cut(s) | 263, 799 |
| ErhI | CCWWGG | 4 cut(s) | 199, 570, 915, 1062 |
| FaqI | GGGAC | 2 cut(s) | 260, 732 |
| FauI | CCCGC | 1 cut(s) | 41 |
| FbaI | TGATCA | 3 cut(s) | 169, 378, 388 |
| FblI | GTMKAC | 1 cut(s) | 328 |
| Fnu4HI | GCNGC | 8 cut(s) | 41, 342, 623, 770, 969, 1047, 1133, 1136 |
| FokI | GGATG | 3 cut(s) | 64, 481, 910 |
| FriOI | GRGCYC | 2 cut(s) | 263, 799 |
| Fsp4HI | GCNGC | 8 cut(s) | 41, 342, 623, 770, 969, 1047, 1133, 1136 |
| FspBI | CTAG | 2 cut(s) | 137, 681 |
| GluI | GCNGC | 8 cut(s) | 41, 342, 623, 770, 969, 1047, 1133, 1136 |
| HaeIII | GGCC | 4 cut(s) | 74, 622, 641, 833 |
| HapII | CCGG | 2 cut(s) | 320, 626 |
| HincII | GTYRAC | 2 cut(s) | 825, 862 |
| HindII | GTYRAC | 2 cut(s) | 825, 862 |
| HinfI | GANTC | 1 cut(s) | 114 |
| HpaI | GTTAAC | 1 cut(s) | 825 |
| HpaII | CCGG | 2 cut(s) | 320, 626 |
| HphI | GGTGA | 1 cut(s) | 422 |
| Hpy166II | GTNNAC | 3 cut(s) | 329, 825, 862 |
| Hpy188I | TCNGA | 4 cut(s) | 456, 1015, 1071, 1099 |
| Hpy188III | TCNNGA | 3 cut(s) | 173, 675, 681 |
| Hpy8I | GTNNAC | 3 cut(s) | 329, 825, 862 |
| Hpy99I | CGWCG | 2 cut(s) | 453, 456 |
| HpyAV | CCTTC | 5 cut(s) | 94, 403, 523, 595, 612 |
| HpyCH4III | ACNGT | 1 cut(s) | 191 |
| HpyCH4IV | ACGT | 4 cut(s) | 437, 721, 730, 753 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 37, 546, 619, 778 |
| HpyF3I | CTNAG | 4 cut(s) | 501, 673, 1098, 1167 |
| HpySE526I | ACGT | 4 cut(s) | 437, 721, 730, 753 |
| KpnI | GGTACC | 1 cut(s) | 96 |
| KroI | GCCGGC | 1 cut(s) | 625 |
| KroNI | GCCGGC | 1 cut(s) | 627 |
| Ksp22I | TGATCA | 3 cut(s) | 169, 378, 388 |
| KspAI | GTTAAC | 1 cut(s) | 825 |
| LguI | GCTCTTC | 1 cut(s) | 405 |
| LmnI | GCTCC | 3 cut(s) | 86, 418, 794 |
| Lsp1109I | GCAGC | 7 cut(s) | 52, 328, 781, 955, 1033, 1119, 1147 |
| LweI | GCATC | 5 cut(s) | 130, 219, 556, 715, 812 |
| MaeI | CTAG | 2 cut(s) | 137, 681 |
| MaeII | ACGT | 4 cut(s) | 437, 721, 730, 753 |
| MaeIII | GTNAC | 1 cut(s) | 185 |
| MboII | GAAGA | 5 cut(s) | 93, 392, 988, 997, 1086 |
| MflI | RGATCY | 2 cut(s) | 677, 1000 |
| MhlI | GDGCHC | 3 cut(s) | 196, 263, 799 |
| MlsI | TGGCCA | 1 cut(s) | 641 |
| MluCI | AATT | 8 cut(s) | 105, 354, 426, 479, 892, 904, 950, 1152 |
| MluNI | TGGCCA | 1 cut(s) | 641 |
| MmeI | TCCRAC | 3 cut(s) | 420, 434, 633 |
| Mox20I | TGGCCA | 1 cut(s) | 641 |
| Mph1103I | ATGCAT | 1 cut(s) | 805 |
| MroNI | GCCGGC | 1 cut(s) | 625 |
| MroXI | GAANNNNTTC | 1 cut(s) | 533 |
| MscI | TGGCCA | 1 cut(s) | 641 |
| MseI | TTAA | 3 cut(s) | 824, 891, 900 |
| MslI | CAYNNNNRTG | 2 cut(s) | 808, 1143 |
| Msp20I | TGGCCA | 1 cut(s) | 641 |
| MspI | CCGG | 2 cut(s) | 320, 626 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 37, 546, 619, 778 |
| NaeI | GCCGGC | 1 cut(s) | 627 |
| NcoI | CCATGG | 3 cut(s) | 199, 570, 915 |
| NgoMIV | GCCGGC | 1 cut(s) | 625 |
| NlaIV | GGNNCC | 6 cut(s) | 94, 361, 796, 834, 921, 1023 |
| NsiI | ATGCAT | 1 cut(s) | 805 |
| NspV | TTCGAA | 2 cut(s) | 616, 1034 |
| PciSI | GCTCTTC | 1 cut(s) | 405 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 727, 759 |
| PdiI | GCCGGC | 1 cut(s) | 627 |
| PdmI | GAANNNNTTC | 1 cut(s) | 533 |
| PfeI | GAWTC | 1 cut(s) | 114 |
| PkrI | GCNGC | 8 cut(s) | 42, 343, 624, 771, 970, 1048, 1134, 1137 |
| Ple19I | CGATCG | 1 cut(s) | 495 |
| PmaCI | CACGTG | 1 cut(s) | 754 |
| PmlI | CACGTG | 1 cut(s) | 754 |
| Ppu21I | YACGTR | 2 cut(s) | 731, 754 |
| Psp1406I | AACGTT | 1 cut(s) | 437 |
| PspCI | CACGTG | 1 cut(s) | 754 |
| PspN4I | GGNNCC | 6 cut(s) | 94, 361, 796, 834, 921, 1023 |
| PspPI | GGNCC | 3 cut(s) | 72, 206, 832 |
| PstI | CTGCAG | 2 cut(s) | 542, 1137 |
| PsuI | RGATCY | 2 cut(s) | 677, 1000 |
| PvuI | CGATCG | 1 cut(s) | 495 |
| RsaI | GTAC | 4 cut(s) | 64, 94, 463, 708 |
| RsaNI | GTAC | 4 cut(s) | 63, 93, 462, 707 |
| RseI | CAYNNNNRTG | 2 cut(s) | 808, 1143 |
| SapI | GCTCTTC | 1 cut(s) | 405 |
| SaqAI | TTAA | 3 cut(s) | 824, 891, 900 |
| SatI | GCNGC | 8 cut(s) | 41, 342, 623, 770, 969, 1047, 1133, 1136 |
| Sau96I | GGNCC | 3 cut(s) | 72, 206, 832 |
| SduI | GDGCHC | 3 cut(s) | 196, 263, 799 |
| SfaNI | GCATC | 5 cut(s) | 130, 219, 556, 715, 812 |
| SfcI | CTRYAG | 3 cut(s) | 217, 538, 1133 |
| SfuI | TTCGAA | 2 cut(s) | 616, 1034 |
| SinI | GGWCC | 1 cut(s) | 206 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 808, 1143 |
| Sse9I | AATT | 8 cut(s) | 105, 354, 426, 479, 892, 904, 950, 1152 |
| SsiI | CCGC | 5 cut(s) | 48, 305, 416, 549, 623 |
| SspMI | CTAG | 2 cut(s) | 137, 681 |
| StyI | CCWWGG | 4 cut(s) | 199, 570, 915, 1062 |
| TaaI | ACNGT | 1 cut(s) | 191 |
| TaiI | ACGT | 4 cut(s) | 440, 724, 733, 756 |
| TaqI | TCGA | 3 cut(s) | 495, 616, 1034 |
| TasI | AATT | 8 cut(s) | 105, 354, 426, 479, 892, 904, 950, 1152 |
| TatI | WGTACW | 1 cut(s) | 461 |
| TauI | GCSGC | 1 cut(s) | 625 |
| TfiI | GAWTC | 1 cut(s) | 114 |
| Tru1I | TTAA | 3 cut(s) | 824, 891, 900 |
| Tru9I | TTAA | 3 cut(s) | 824, 891, 900 |
| TscAI | CASTG | 1 cut(s) | 64 |
| TseI | GCWGC | 7 cut(s) | 40, 341, 769, 968, 1046, 1132, 1135 |
| TspDTI | ATGAA | 1 cut(s) | 1128 |
| TspGWI | ACGGA | 2 cut(s) | 198, 728 |
| TspRI | CASTG | 1 cut(s) | 64 |
| VpaK11BI | GGWCC | 1 cut(s) | 206 |
| XbaI | TCTAGA | 1 cut(s) | 680 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 649 |
| XmiI | GTMKAC | 1 cut(s) | 328 |
| XmnI | GAANNNNTTC | 1 cut(s) | 533 |
| XspI | CTAG | 2 cut(s) | 137, 681 |
| Zsp2I | ATGCAT | 1 cut(s) | 805 |