Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 174 |
| AccII | CGCG | 3 cut(s) | 74, 416, 516 |
| AciI | CCGC | 3 cut(s) | 74, 245, 371 |
| AclWI | GGATC | 1 cut(s) | 30 |
| AcyI | GRCGYC | 1 cut(s) | 602 |
| AdeI | CACNNNGTG | 1 cut(s) | 31 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AgsI | TTSAA | 2 cut(s) | 51, 154 |
| AjnI | CCWGG | 2 cut(s) | 116, 145 |
| AluBI | AGCT | 3 cut(s) | 80, 478, 562 |
| AluI | AGCT | 3 cut(s) | 80, 478, 562 |
| Alw26I | GTCTC | 2 cut(s) | 197, 386 |
| AlwI | GGATC | 1 cut(s) | 30 |
| AoxI | GGCC | 1 cut(s) | 391 |
| ApeKI | GCWGC | 5 cut(s) | 80, 83, 113, 121, 559 |
| AseI | ATTAAT | 1 cut(s) | 645 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AspS9I | GGNCC | 2 cut(s) | 159, 272 |
| AsuC2I | CCSGG | 1 cut(s) | 461 |
| AsuHPI | GGTGA | 2 cut(s) | 385, 457 |
| AsuNHI | GCTAGC | 1 cut(s) | 124 |
| AvaII | GGWCC | 2 cut(s) | 159, 272 |
| AxyI | CCTNAGG | 1 cut(s) | 631 |
| BbvI | GCAGC | 5 cut(s) | 67, 70, 100, 108, 571 |
| BccI | CCATC | 1 cut(s) | 311 |
| BciT130I | CCWGG | 2 cut(s) | 118, 147 |
| BclI | TGATCA | 1 cut(s) | 564 |
| BcnI | CCSGG | 1 cut(s) | 461 |
| BcoDI | GTCTC | 2 cut(s) | 197, 386 |
| BfaI | CTAG | 5 cut(s) | 125, 363, 434, 545, 670 |
| BisI | GCNGC | 5 cut(s) | 81, 84, 114, 122, 560 |
| BlsI | GCNGC | 5 cut(s) | 82, 85, 115, 123, 561 |
| Bme1390I | CCNGG | 3 cut(s) | 118, 147, 461 |
| Bme18I | GGWCC | 2 cut(s) | 159, 272 |
| BmgT120I | GGNCC | 2 cut(s) | 159, 272 |
| BmiI | GGNNCC | 2 cut(s) | 160, 273 |
| BmrFI | CCNGG | 3 cut(s) | 118, 147, 461 |
| BmrI | ACTGGG | 1 cut(s) | 27 |
| BmsI | GCATC | 3 cut(s) | 358, 437, 529 |
| BmtI | GCTAGC | 1 cut(s) | 128 |
| BmuI | ACTGGG | 1 cut(s) | 27 |
| BpmI | CTGGAG | 1 cut(s) | 27 |
| BpuMI | CCSGG | 1 cut(s) | 461 |
| BsaHI | GRCGYC | 1 cut(s) | 602 |
| BsaI | GGTCTC | 2 cut(s) | 197, 386 |
| BsaJI | CCNNGG | 4 cut(s) | 145, 275, 459, 609 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 326, 356 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| Bse118I | RCCGGY | 1 cut(s) | 598 |
| Bse1I | ACTGG | 3 cut(s) | 22, 329, 660 |
| Bse21I | CCTNAGG | 1 cut(s) | 631 |
| Bse3DI | GCAATG | 1 cut(s) | 162 |
| BseBI | CCWGG | 2 cut(s) | 118, 147 |
| BseDI | CCNNGG | 4 cut(s) | 145, 275, 459, 609 |
| BseGI | GGATG | 2 cut(s) | 343, 373 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseMI | GCAATG | 1 cut(s) | 162 |
| BseMII | CTCAG | 2 cut(s) | 386, 645 |
| BseNI | ACTGG | 3 cut(s) | 22, 329, 660 |
| BseRI | GAGGAG | 1 cut(s) | 593 |
| BseXI | GCAGC | 5 cut(s) | 67, 70, 100, 108, 571 |
| Bsh1236I | CGCG | 3 cut(s) | 74, 416, 516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 465 |
| BshFI | GGCC | 1 cut(s) | 393 |
| BsiEI | CGRYCG | 1 cut(s) | 465 |
| BsiSI | CCGG | 2 cut(s) | 461, 599 |
| BslFI | GGGAC | 3 cut(s) | 83, 172, 451 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsmAI | GTCTC | 2 cut(s) | 197, 386 |
| BsmFI | GGGAC | 3 cut(s) | 83, 172, 451 |
| BsmI | GAATGC | 1 cut(s) | 412 |
| BsnI | GGCC | 1 cut(s) | 393 |
| Bso31I | GGTCTC | 2 cut(s) | 197, 386 |
| Bsp143I | GATC | 3 cut(s) | 22, 185, 564 |
| Bsp19I | CCATGG | 1 cut(s) | 609 |
| Bsp68I | TCGCGA | 1 cut(s) | 516 |
| BspACI | CCGC | 3 cut(s) | 74, 245, 371 |
| BspANI | GGCC | 1 cut(s) | 393 |
| BspCNI | CTCAG | 2 cut(s) | 387, 644 |
| BspFNI | CGCG | 3 cut(s) | 74, 416, 516 |
| BspLI | GGNNCC | 2 cut(s) | 160, 273 |
| BspOI | GCTAGC | 1 cut(s) | 128 |
| BspPI | GGATC | 1 cut(s) | 30 |
| BspQI | GCTCTTC | 1 cut(s) | 597 |
| BspTNI | GGTCTC | 2 cut(s) | 197, 386 |
| BsrDI | GCAATG | 1 cut(s) | 162 |
| BsrFI | RCCGGY | 1 cut(s) | 598 |
| BsrI | ACTGG | 3 cut(s) | 22, 329, 660 |
| BssAI | RCCGGY | 1 cut(s) | 598 |
| BssECI | CCNNGG | 4 cut(s) | 145, 275, 459, 609 |
| BssMI | GATC | 3 cut(s) | 22, 185, 564 |
| BssNI | GRCGYC | 1 cut(s) | 602 |
| BssT1I | CCWWGG | 2 cut(s) | 275, 609 |
| Bst2UI | CCWGG | 2 cut(s) | 118, 147 |
| Bst4CI | ACNGT | 1 cut(s) | 287 |
| Bst6I | CTCTTC | 1 cut(s) | 597 |
| BstACI | GRCGYC | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 2 cut(s) | 126, 414 |
| BstDEI | CTNAG | 2 cut(s) | 395, 631 |
| BstDSI | CCRYGG | 1 cut(s) | 609 |
| BstF5I | GGATG | 2 cut(s) | 343, 373 |
| BstFNI | CGCG | 3 cut(s) | 74, 416, 516 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 3 cut(s) | 25, 188, 567 |
| BstMAI | GTCTC | 2 cut(s) | 197, 386 |
| BstMBI | GATC | 3 cut(s) | 22, 185, 564 |
| BstMCI | CGRYCG | 1 cut(s) | 465 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 80, 134, 368 |
| BstNI | CCWGG | 2 cut(s) | 118, 147 |
| BstSCI | CCNGG | 3 cut(s) | 116, 145, 459 |
| BstUI | CGCG | 3 cut(s) | 74, 416, 516 |
| BstV1I | GCAGC | 5 cut(s) | 67, 70, 100, 108, 571 |
| Bsu36I | CCTNAGG | 1 cut(s) | 631 |
| BsuRI | GGCC | 1 cut(s) | 393 |
| BtgI | CCRYGG | 1 cut(s) | 609 |
| BtsCI | GGATG | 2 cut(s) | 343, 373 |
| BtsIMutI | CAGTG | 2 cut(s) | 336, 653 |
| BtuMI | TCGCGA | 1 cut(s) | 516 |
| Cac8I | GCNNGC | 2 cut(s) | 126, 414 |
| CfoI | GCGC | 1 cut(s) | 412 |
| Cfr10I | RCCGGY | 1 cut(s) | 598 |
| Cfr13I | GGNCC | 2 cut(s) | 159, 272 |
| CseI | GACGC | 2 cut(s) | 80, 591 |
| CviAII | CATG | 5 cut(s) | 13, 266, 295, 536, 610 |
| DdeI | CTNAG | 2 cut(s) | 395, 631 |
| DpnI | GATC | 3 cut(s) | 24, 187, 566 |
| DpnII | GATC | 3 cut(s) | 22, 185, 564 |
| DraIII | CACNNNGTG | 1 cut(s) | 31 |
| Eam1104I | CTCTTC | 1 cut(s) | 597 |
| EarI | CTCTTC | 1 cut(s) | 597 |
| Eco130I | CCWWGG | 2 cut(s) | 275, 609 |
| Eco31I | GGTCTC | 2 cut(s) | 197, 386 |
| Eco47I | GGWCC | 2 cut(s) | 159, 272 |
| Eco81I | CCTNAGG | 1 cut(s) | 631 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRII | CCWGG | 2 cut(s) | 116, 145 |
| EcoT14I | CCWWGG | 2 cut(s) | 275, 609 |
| ErhI | CCWWGG | 2 cut(s) | 275, 609 |
| FaeI | CATG | 5 cut(s) | 16, 269, 298, 539, 613 |
| FaqI | GGGAC | 3 cut(s) | 83, 172, 451 |
| FatI | CATG | 5 cut(s) | 12, 265, 294, 535, 609 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FbaI | TGATCA | 1 cut(s) | 564 |
| Fnu4HI | GCNGC | 5 cut(s) | 81, 84, 114, 122, 560 |
| FokI | GGATG | 2 cut(s) | 350, 380 |
| Fsp4HI | GCNGC | 5 cut(s) | 81, 84, 114, 122, 560 |
| FspBI | CTAG | 5 cut(s) | 125, 363, 434, 545, 670 |
| GlaI | GCGC | 1 cut(s) | 411 |
| GluI | GCNGC | 5 cut(s) | 81, 84, 114, 122, 560 |
| GsuI | CTGGAG | 1 cut(s) | 27 |
| HaeIII | GGCC | 1 cut(s) | 393 |
| HapII | CCGG | 2 cut(s) | 461, 599 |
| HgaI | GACGC | 2 cut(s) | 80, 591 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin1I | GRCGYC | 1 cut(s) | 602 |
| Hin1II | CATG | 5 cut(s) | 16, 269, 298, 539, 613 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HinfI | GANTC | 3 cut(s) | 47, 150, 622 |
| HpaII | CCGG | 2 cut(s) | 461, 599 |
| HphI | GGTGA | 2 cut(s) | 385, 457 |
| Hpy188I | TCNGA | 3 cut(s) | 185, 475, 621 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 466, 515 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 287 |
| HpyCH4V | TGCA | 2 cut(s) | 265, 428 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 80, 134, 368 |
| HpyF3I | CTNAG | 2 cut(s) | 395, 631 |
| Hsp92I | GRCGYC | 1 cut(s) | 602 |
| Hsp92II | CATG | 5 cut(s) | 16, 269, 298, 539, 613 |
| HspAI | GCGC | 1 cut(s) | 410 |
| Ksp22I | TGATCA | 1 cut(s) | 564 |
| Kzo9I | GATC | 3 cut(s) | 22, 185, 564 |
| LguI | GCTCTTC | 1 cut(s) | 597 |
| LmnI | GCTCC | 2 cut(s) | 77, 475 |
| Lsp1109I | GCAGC | 5 cut(s) | 67, 70, 100, 108, 571 |
| LweI | GCATC | 3 cut(s) | 358, 437, 529 |
| MaeI | CTAG | 5 cut(s) | 125, 363, 434, 545, 670 |
| MaeIII | GTNAC | 1 cut(s) | 651 |
| MalI | GATC | 3 cut(s) | 24, 187, 566 |
| MboI | GATC | 3 cut(s) | 22, 185, 564 |
| MboII | GAAGA | 1 cut(s) | 584 |
| MfeI | CAATTG | 1 cut(s) | 40 |
| MluCI | AATT | 2 cut(s) | 40, 139 |
| MlyI | GAGTC | 1 cut(s) | 616 |
| MmeI | TCCRAC | 2 cut(s) | 190, 453 |
| MnlI | CCTC | 5 cut(s) | 328, 352, 369, 571, 640 |
| MseI | TTAA | 3 cut(s) | 501, 585, 645 |
| MspA1I | CMGCKG | 1 cut(s) | 562 |
| MspI | CCGG | 2 cut(s) | 461, 599 |
| MspR9I | CCNGG | 3 cut(s) | 118, 147, 461 |
| MunI | CAATTG | 1 cut(s) | 40 |
| Mva1269I | GAATGC | 1 cut(s) | 412 |
| MvaI | CCWGG | 2 cut(s) | 118, 147 |
| MvnI | CGCG | 3 cut(s) | 74, 416, 516 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 80, 134, 368 |
| NciI | CCSGG | 1 cut(s) | 461 |
| NcoI | CCATGG | 1 cut(s) | 609 |
| NdeII | GATC | 3 cut(s) | 22, 185, 564 |
| NheI | GCTAGC | 1 cut(s) | 124 |
| NlaIII | CATG | 5 cut(s) | 16, 269, 298, 539, 613 |
| NlaIV | GGNNCC | 2 cut(s) | 160, 273 |
| NmuCI | GTSAC | 1 cut(s) | 651 |
| NruI | TCGCGA | 1 cut(s) | 516 |
| PciSI | GCTCTTC | 1 cut(s) | 597 |
| PctI | GAATGC | 1 cut(s) | 412 |
| PfeI | GAWTC | 2 cut(s) | 47, 150 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 174 |
| PkrI | GCNGC | 5 cut(s) | 82, 85, 115, 123, 561 |
| PleI | GAGTC | 1 cut(s) | 616 |
| PpsI | GAGTC | 1 cut(s) | 616 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| PshBI | ATTAAT | 1 cut(s) | 645 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 2 cut(s) | 116, 145 |
| PspGI | CCWGG | 2 cut(s) | 116, 145 |
| PspN4I | GGNNCC | 2 cut(s) | 160, 273 |
| PspPI | GGNCC | 2 cut(s) | 159, 272 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PvuII | CAGCTG | 1 cut(s) | 562 |
| RruI | TCGCGA | 1 cut(s) | 516 |
| SapI | GCTCTTC | 1 cut(s) | 597 |
| SaqAI | TTAA | 3 cut(s) | 501, 585, 645 |
| SatI | GCNGC | 5 cut(s) | 81, 84, 114, 122, 560 |
| Sau3AI | GATC | 3 cut(s) | 22, 185, 564 |
| Sau96I | GGNCC | 2 cut(s) | 159, 272 |
| SchI | GAGTC | 1 cut(s) | 616 |
| ScrFI | CCNGG | 3 cut(s) | 118, 147, 461 |
| SetI | ASST | 7 cut(s) | 82, 480, 501, 550, 564, 632, 667 |
| SfaNI | GCATC | 3 cut(s) | 358, 437, 529 |
| SgrAI | CRCCGGYG | 1 cut(s) | 598 |
| SinI | GGWCC | 2 cut(s) | 159, 272 |
| Sse9I | AATT | 2 cut(s) | 40, 139 |
| SsiI | CCGC | 3 cut(s) | 74, 245, 371 |
| SspMI | CTAG | 5 cut(s) | 125, 363, 434, 545, 670 |
| StyD4I | CCNGG | 3 cut(s) | 116, 145, 459 |
| StyI | CCWWGG | 2 cut(s) | 275, 609 |
| TaaI | ACNGT | 1 cut(s) | 287 |
| TaqI | TCGA | 1 cut(s) | 234 |
| TaqII | GACCGA | 1 cut(s) | 639 |
| TasI | AATT | 2 cut(s) | 40, 139 |
| TfiI | GAWTC | 2 cut(s) | 47, 150 |
| Tru1I | TTAA | 3 cut(s) | 501, 585, 645 |
| Tru9I | TTAA | 3 cut(s) | 501, 585, 645 |
| TscAI | CASTG | 2 cut(s) | 336, 660 |
| TseFI | GTSAC | 1 cut(s) | 651 |
| TseI | GCWGC | 5 cut(s) | 80, 83, 113, 121, 559 |
| Tsp45I | GTSAC | 1 cut(s) | 651 |
| TspDTI | ATGAA | 4 cut(s) | 51, 255, 475, 507 |
| TspRI | CASTG | 2 cut(s) | 336, 660 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 2 cut(s) | 159, 272 |
| VspI | ATTAAT | 1 cut(s) | 645 |
| XspI | CTAG | 5 cut(s) | 125, 363, 434, 545, 670 |