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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 856 |
| AciI | CCGC | 3 cut(s) | 115, 233, 508 |
| AclWI | GGATC | 3 cut(s) | 31, 382, 649 |
| AcoI | YGGCCR | 1 cut(s) | 475 |
| AcuI | CTGAAG | 3 cut(s) | 734, 777, 876 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 542, 753 |
| AgsI | TTSAA | 5 cut(s) | 163, 308, 813, 834, 873 |
| AhlI | ACTAGT | 2 cut(s) | 28, 191 |
| AjnI | CCWGG | 5 cut(s) | 86, 322, 511, 541, 570 |
| AluBI | AGCT | 7 cut(s) | 131, 360, 424, 458, 718, 776, 809 |
| AluI | AGCT | 7 cut(s) | 131, 360, 424, 458, 718, 776, 809 |
| Alw26I | GTCTC | 2 cut(s) | 431, 875 |
| AlwI | GGATC | 3 cut(s) | 31, 382, 649 |
| AoxI | GGCC | 3 cut(s) | 475, 509, 910 |
| ApeKI | GCWGC | 2 cut(s) | 293, 424 |
| AspS9I | GGNCC | 2 cut(s) | 326, 910 |
| AsuC2I | CCSGG | 1 cut(s) | 753 |
| AsuHPI | GGTGA | 6 cut(s) | 328, 796, 835, 872, 901, 943 |
| AvaII | GGWCC | 1 cut(s) | 326 |
| BalI | TGGCCA | 1 cut(s) | 477 |
| BbvI | GCAGC | 2 cut(s) | 280, 411 |
| BccI | CCATC | 3 cut(s) | 28, 337, 545 |
| BciT130I | CCWGG | 5 cut(s) | 88, 324, 513, 543, 572 |
| BclI | TGATCA | 2 cut(s) | 72, 600 |
| BcnI | CCSGG | 1 cut(s) | 753 |
| BcoDI | GTCTC | 2 cut(s) | 431, 875 |
| BcuI | ACTAGT | 2 cut(s) | 28, 191 |
| BfaI | CTAG | 4 cut(s) | 29, 192, 527, 681 |
| BfmI | CTRYAG | 3 cut(s) | 99, 126, 294 |
| BfuAI | ACCTGC | 1 cut(s) | 856 |
| BisI | GCNGC | 4 cut(s) | 234, 294, 425, 509 |
| BlsI | GCNGC | 4 cut(s) | 235, 295, 426, 510 |
| Bme1390I | CCNGG | 6 cut(s) | 88, 324, 513, 543, 572, 753 |
| Bme18I | GGWCC | 1 cut(s) | 326 |
| BmgT120I | GGNCC | 2 cut(s) | 326, 910 |
| BmiI | GGNNCC | 2 cut(s) | 11, 339 |
| BmrFI | CCNGG | 6 cut(s) | 88, 324, 513, 543, 572, 753 |
| BmsI | GCATC | 3 cut(s) | 127, 394, 667 |
| BpuEI | CTTGAG | 3 cut(s) | 272, 743, 756 |
| BpuMI | CCSGG | 1 cut(s) | 753 |
| BsaJI | CCNNGG | 3 cut(s) | 570, 636, 752 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 542, 753 |
| Bse1I | ACTGG | 1 cut(s) | 920 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| BseBI | CCWGG | 5 cut(s) | 88, 324, 513, 543, 572 |
| BseDI | CCNNGG | 3 cut(s) | 570, 636, 752 |
| BseGI | GGATG | 6 cut(s) | 46, 142, 220, 556, 595, 682 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 542, 753 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseMII | CTCAG | 1 cut(s) | 596 |
| BseNI | ACTGG | 1 cut(s) | 920 |
| BseRI | GAGGAG | 1 cut(s) | 746 |
| BseXI | GCAGC | 2 cut(s) | 280, 411 |
| BseYI | CCCAGC | 1 cut(s) | 170 |
| BshFI | GGCC | 3 cut(s) | 477, 511, 912 |
| BsiSI | CCGG | 2 cut(s) | 752, 896 |
| BslFI | GGGAC | 2 cut(s) | 187, 553 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 542, 753 |
| BsmAI | GTCTC | 2 cut(s) | 431, 875 |
| BsmFI | GGGAC | 2 cut(s) | 187, 553 |
| BsnI | GGCC | 3 cut(s) | 477, 511, 912 |
| Bsp143I | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| BspACI | CCGC | 3 cut(s) | 115, 233, 508 |
| BspANI | GGCC | 3 cut(s) | 477, 511, 912 |
| BspCNI | CTCAG | 1 cut(s) | 595 |
| BspLI | GGNNCC | 2 cut(s) | 11, 339 |
| BspMAI | CTGCAG | 1 cut(s) | 298 |
| BspMI | ACCTGC | 1 cut(s) | 856 |
| BspPI | GGATC | 3 cut(s) | 31, 382, 649 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrI | ACTGG | 1 cut(s) | 920 |
| BssECI | CCNNGG | 3 cut(s) | 570, 636, 752 |
| BssMI | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| BssT1I | CCWWGG | 1 cut(s) | 636 |
| Bst2UI | CCWGG | 5 cut(s) | 88, 324, 513, 543, 572 |
| Bst4CI | ACNGT | 1 cut(s) | 946 |
| Bst6I | CTCTTC | 2 cut(s) | 164, 813 |
| BstC8I | GCNNGC | 3 cut(s) | 115, 403, 429 |
| BstDEI | CTNAG | 4 cut(s) | 180, 265, 347, 582 |
| BstF5I | GGATG | 6 cut(s) | 46, 142, 220, 556, 595, 682 |
| BstKTI | GATC | 7 cut(s) | 26, 75, 377, 496, 595, 603, 644 |
| BstMAI | GTCTC | 2 cut(s) | 431, 875 |
| BstMBI | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 230, 724 |
| BstNI | CCWGG | 5 cut(s) | 88, 324, 513, 543, 572 |
| BstNSI | RCATGY | 1 cut(s) | 405 |
| BstSCI | CCNGG | 6 cut(s) | 86, 322, 511, 541, 570, 751 |
| BstSFI | CTRYAG | 3 cut(s) | 99, 126, 294 |
| BstV1I | GCAGC | 2 cut(s) | 280, 411 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 20, 485 |
| BsuRI | GGCC | 3 cut(s) | 477, 511, 912 |
| BtsCI | GGATG | 6 cut(s) | 46, 142, 220, 556, 595, 682 |
| BtsIMutI | CAGTG | 1 cut(s) | 478 |
| BveI | ACCTGC | 1 cut(s) | 856 |
| Cac8I | GCNNGC | 3 cut(s) | 115, 403, 429 |
| Cfr13I | GGNCC | 2 cut(s) | 326, 910 |
| CviAII | CATG | 2 cut(s) | 402, 975 |
| DdeI | CTNAG | 4 cut(s) | 180, 265, 347, 582 |
| DpnI | GATC | 7 cut(s) | 25, 74, 376, 495, 594, 602, 643 |
| DpnII | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| EaeI | YGGCCR | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 2 cut(s) | 164, 813 |
| EarI | CTCTTC | 2 cut(s) | 164, 813 |
| Eco130I | CCWWGG | 1 cut(s) | 636 |
| Eco47I | GGWCC | 1 cut(s) | 326 |
| Eco57I | CTGAAG | 3 cut(s) | 734, 777, 876 |
| EcoRII | CCWGG | 5 cut(s) | 86, 322, 511, 541, 570 |
| EcoT14I | CCWWGG | 1 cut(s) | 636 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 636 |
| FaeI | CATG | 2 cut(s) | 405, 978 |
| FaqI | GGGAC | 2 cut(s) | 187, 553 |
| FatI | CATG | 2 cut(s) | 401, 974 |
| FauI | CCCGC | 1 cut(s) | 122 |
| FbaI | TGATCA | 2 cut(s) | 72, 600 |
| Fnu4HI | GCNGC | 4 cut(s) | 234, 294, 425, 509 |
| FokI | GGATG | 6 cut(s) | 33, 149, 227, 563, 602, 689 |
| Fsp4HI | GCNGC | 4 cut(s) | 234, 294, 425, 509 |
| FspBI | CTAG | 4 cut(s) | 29, 192, 527, 681 |
| GluI | GCNGC | 4 cut(s) | 234, 294, 425, 509 |
| GsaI | CCCAGC | 1 cut(s) | 174 |
| HaeIII | GGCC | 3 cut(s) | 477, 511, 912 |
| HapII | CCGG | 2 cut(s) | 752, 896 |
| Hin1II | CATG | 2 cut(s) | 405, 978 |
| HincII | GTYRAC | 1 cut(s) | 153 |
| HindII | GTYRAC | 1 cut(s) | 153 |
| HindIII | AAGCTT | 3 cut(s) | 456, 716, 807 |
| HinfI | GANTC | 7 cut(s) | 83, 154, 285, 562, 684, 743, 892 |
| HpaII | CCGG | 2 cut(s) | 752, 896 |
| HphI | GGTGA | 6 cut(s) | 328, 796, 835, 872, 901, 943 |
| Hpy166II | GTNNAC | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 4 cut(s) | 189, 284, 585, 714 |
| Hpy188III | TCNNGA | 2 cut(s) | 445, 722 |
| Hpy8I | GTNNAC | 1 cut(s) | 153 |
| HpyAV | CCTTC | 5 cut(s) | 546, 580, 616, 751, 851 |
| HpyCH4III | ACNGT | 1 cut(s) | 946 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 140, 202, 296, 405, 668, 974 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 230, 724 |
| HpyF3I | CTNAG | 4 cut(s) | 180, 265, 347, 582 |
| Hsp92II | CATG | 2 cut(s) | 405, 978 |
| Ksp22I | TGATCA | 2 cut(s) | 72, 600 |
| Kzo9I | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| Lsp1109I | GCAGC | 2 cut(s) | 280, 411 |
| LweI | GCATC | 3 cut(s) | 127, 394, 667 |
| MaeI | CTAG | 4 cut(s) | 29, 192, 527, 681 |
| MaeIII | GTNAC | 2 cut(s) | 522, 889 |
| MalI | GATC | 7 cut(s) | 25, 74, 376, 495, 594, 602, 643 |
| MboI | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| MboII | GAAGA | 5 cut(s) | 151, 253, 631, 830, 960 |
| MfeI | CAATTG | 1 cut(s) | 834 |
| MlsI | TGGCCA | 1 cut(s) | 477 |
| MluCI | AATT | 6 cut(s) | 64, 76, 163, 277, 389, 834 |
| MluNI | TGGCCA | 1 cut(s) | 477 |
| MlyI | GAGTC | 4 cut(s) | 148, 279, 693, 886 |
| Mox20I | TGGCCA | 1 cut(s) | 477 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 477 |
| MseI | TTAA | 2 cut(s) | 369, 657 |
| MslI | CAYNNNNRTG | 1 cut(s) | 18 |
| Msp20I | TGGCCA | 1 cut(s) | 477 |
| MspA1I | CMGCKG | 2 cut(s) | 131, 424 |
| MspI | CCGG | 2 cut(s) | 752, 896 |
| MspR9I | CCNGG | 6 cut(s) | 88, 324, 513, 543, 572, 753 |
| MunI | CAATTG | 1 cut(s) | 834 |
| MvaI | CCWGG | 5 cut(s) | 88, 324, 513, 543, 572 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 230, 724 |
| NciI | CCSGG | 1 cut(s) | 753 |
| NdeII | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| NlaIII | CATG | 2 cut(s) | 405, 978 |
| NlaIV | GGNNCC | 2 cut(s) | 11, 339 |
| NmuCI | GTSAC | 1 cut(s) | 889 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 405 |
| PaeI | GCATGC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 83, 562, 743 |
| PkrI | GCNGC | 4 cut(s) | 235, 295, 426, 510 |
| PleI | GAGTC | 4 cut(s) | 148, 279, 692, 886 |
| PpsI | GAGTC | 4 cut(s) | 148, 279, 692, 886 |
| Psp6I | CCWGG | 5 cut(s) | 86, 322, 511, 541, 570 |
| PspFI | CCCAGC | 1 cut(s) | 170 |
| PspGI | CCWGG | 5 cut(s) | 86, 322, 511, 541, 570 |
| PspN4I | GGNNCC | 2 cut(s) | 11, 339 |
| PspPI | GGNCC | 2 cut(s) | 326, 910 |
| PstI | CTGCAG | 1 cut(s) | 298 |
| PvuII | CAGCTG | 2 cut(s) | 131, 424 |
| RseI | CAYNNNNRTG | 1 cut(s) | 18 |
| SaqAI | TTAA | 2 cut(s) | 369, 657 |
| SatI | GCNGC | 4 cut(s) | 234, 294, 425, 509 |
| Sau3AI | GATC | 7 cut(s) | 23, 72, 374, 493, 592, 600, 641 |
| Sau96I | GGNCC | 2 cut(s) | 326, 910 |
| SchI | GAGTC | 4 cut(s) | 148, 279, 693, 886 |
| ScrFI | CCNGG | 6 cut(s) | 88, 324, 513, 543, 572, 753 |
| SfaNI | GCATC | 3 cut(s) | 127, 394, 667 |
| SfcI | CTRYAG | 3 cut(s) | 99, 126, 294 |
| SinI | GGWCC | 1 cut(s) | 326 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 18 |
| SmlI | CTYRAG | 3 cut(s) | 287, 722, 771 |
| SmoI | CTYRAG | 3 cut(s) | 287, 722, 771 |
| SpeI | ACTAGT | 2 cut(s) | 28, 191 |
| SphI | GCATGC | 1 cut(s) | 405 |
| Sse9I | AATT | 6 cut(s) | 64, 76, 163, 277, 389, 834 |
| SsiI | CCGC | 3 cut(s) | 115, 233, 508 |
| SspMI | CTAG | 4 cut(s) | 29, 192, 527, 681 |
| StyD4I | CCNGG | 6 cut(s) | 86, 322, 511, 541, 570, 751 |
| StyI | CCWWGG | 1 cut(s) | 636 |
| TaaI | ACNGT | 1 cut(s) | 946 |
| TasI | AATT | 6 cut(s) | 64, 76, 163, 277, 389, 834 |
| TauI | GCSGC | 2 cut(s) | 236, 511 |
| TfiI | GAWTC | 3 cut(s) | 83, 562, 743 |
| Tru1I | TTAA | 2 cut(s) | 369, 657 |
| Tru9I | TTAA | 2 cut(s) | 369, 657 |
| TscAI | CASTG | 1 cut(s) | 478 |
| TseFI | GTSAC | 1 cut(s) | 889 |
| TseI | GCWGC | 2 cut(s) | 293, 424 |
| Tsp45I | GTSAC | 1 cut(s) | 889 |
| TspGWI | ACGGA | 1 cut(s) | 715 |
| TspRI | CASTG | 1 cut(s) | 478 |
| VpaK11BI | GGWCC | 1 cut(s) | 326 |
| XceI | RCATGY | 1 cut(s) | 405 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 920 |
| XspI | CTAG | 4 cut(s) | 29, 192, 527, 681 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |