Rmu_ssc0000409.1_g000012

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000409.1
OG0000049
Physical Location & Seq
Reverse (-)
50303 .. 51799
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000409.1_g000012.1.cds

Sequence Viewer

Length: 1197 bp
atgatgcagagtagggctatggatgcttgtaaccccttcgactttgcaagggtcacgctcggagcggtggcactgcaggatactcactggtatatgtttgaacatgaagttgatctcaatagggctctgcatggcgggccgtggttttacaagaatacgatgttgttggttggagactatgatgggattggttcggtggagataatcctgctgtggaagttagagacttgggtggtggtgaagggactgccagtagcccttcttaacaaagcagccctaaccctgatagggtctgcgattggccatgtcactagatttgatcagtcgacactccgatggaaggaggaggaacagaggatccggctggtgatggatgttcggcgttgggtccatagctggatgtttttcgagttctcgcctacagtgcaacctgagatcttactggtttatgagaaagtgaagggcttttgtcgtgagtgtggtctatttgagcatagtgaatcgggctgcgatggattcttggcggttgagaaagcagagtttcagcaagggccgccagcagcaactatggcaggattgtcgttggctatggtgggaatggagatggtgctgcagcaagtggactctggtgttgatgggccgggttccaggattcctggaggggtggtagcccatgcgtcattgggagaggataggtcgtctggacctaaacagggtgaagatgttattggtacgtcgcacggtatgatagatcatggggatgtagaatggatcaagaattggaagactttggtttcggactgctctttgaccaaaatggtgccaatgtcgggtaagcgtctgttgtcaccggctcatcttgctcttaaggtggatgagaacatgattctaatgttgcaacataaaaatgacaagattatcatttctccaaggaagaagaaattgggacgccctcgtgggagtaagaataaacctaaggctgctagggttttggaaccagagttgcaagagaggaaacaacgcaaatggaagagccatattgattcccaaggtgagtatgcagattgtttgcctacggagactacttctcctaaagttgatggatgggacaagataggcgaaatggaagaggaggctacggtccctcttccggggcacatttcaattttgttaggtcgcaaaaatattagtttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

398

Amino Acids

44.51

Weight (kDa)

6.51

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 326
AciI CCGC 4 cut(s) 65, 135, 524, 554
AclWI GGATC 3 cut(s) 352, 365, 779
AcoI YGGCCR 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 949
AfaI GTAC 1 cut(s) 733
AfiI CCNNNNNNNGG 6 cut(s) 288, 340, 713, 830, 1150, 1151
AflII CTTAAG 1 cut(s) 866
AgsI TTSAA 2 cut(s) 101, 1164
AjnI CCWGG 2 cut(s) 647, 655
AjuI GAANNNNNNNTTGG 4 cut(s) 711, 743, 926, 958
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
Alw26I GTCTC 3 cut(s) 168, 218, 1073
AlwI GGATC 3 cut(s) 352, 365, 779
AoxI GGCC 4 cut(s) 137, 301, 551, 638
ApeKI GCWGC 6 cut(s) 272, 507, 560, 610, 613, 980
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
AspS9I GGNCC 6 cut(s) 137, 388, 551, 638, 704, 1141
AsuC2I CCSGG 2 cut(s) 642, 1152
AsuHPI GGTGA 5 cut(s) 250, 379, 728, 840, 1064
AvaII GGWCC 3 cut(s) 388, 704, 1141
AxyI CCTNAGG 1 cut(s) 975
BaeGI GKGCMC 1 cut(s) 1158
BalI TGGCCA 1 cut(s) 303
BamHI GGATCC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 820
BanII GRGCYC 1 cut(s) 127
BauI CACGAG 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 791
BbvI GCAGC 6 cut(s) 284, 494, 572, 597, 625, 967
BccI CCATC 8 cut(s) 176, 330, 364, 506, 598, 629, 1094, 1098
BceAI ACGGC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 2 cut(s) 649, 657
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 2 cut(s) 642, 1152
BcoDI GTCTC 3 cut(s) 168, 218, 1073
BfaI CTAG 2 cut(s) 312, 984
BfmI CTRYAG 3 cut(s) 74, 420, 611
BfrI CTTAAG 1 cut(s) 866
BfuI GTATCC 1 cut(s) 73
BglII AGATCT 1 cut(s) 435
BisI GCNGC 7 cut(s) 273, 508, 554, 561, 611, 614, 981
BlsI GCNGC 7 cut(s) 274, 509, 555, 562, 612, 615, 982
Bme1390I CCNGG 4 cut(s) 642, 649, 657, 1152
Bme18I GGWCC 3 cut(s) 388, 704, 1141
BmgT120I GGNCC 6 cut(s) 137, 388, 551, 638, 704, 1141
BmiI GGNNCC 6 cut(s) 359, 389, 646, 822, 996, 1143
BmrFI CCNGG 4 cut(s) 642, 649, 657, 1152
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 678
BpuMI CCSGG 2 cut(s) 642, 1152
BsaHI GRCGYC 1 cut(s) 949
BsaJI CCNNGG 4 cut(s) 140, 929, 1048, 1151
BsaXI ACNNNNNCTCC 4 cut(s) 651, 681, 1072, 1102
Bsc4I CCNNNNNNNGG 6 cut(s) 288, 340, 713, 830, 1150, 1151
Bse118I RCCGGY 1 cut(s) 850
Bse1I ACTGG 3 cut(s) 92, 251, 447
Bse21I CCTNAGG 1 cut(s) 975
BseBI CCWGG 2 cut(s) 649, 657
BseDI CCNNGG 4 cut(s) 140, 929, 1048, 1151
BseGI GGATG 6 cut(s) 28, 379, 405, 766, 880, 1109
BseLI CCNNNNNNNGG 6 cut(s) 288, 340, 713, 830, 1150, 1151
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 3 cut(s) 92, 251, 447
BseRI GAGGAG 2 cut(s) 359, 1145
BseSI GKGCMC 1 cut(s) 1158
BseXI GCAGC 6 cut(s) 284, 494, 572, 597, 625, 967
BshFI GGCC 4 cut(s) 139, 303, 553, 640
BshNI GGYRCC 1 cut(s) 820
BsiSI CCGG 4 cut(s) 361, 641, 851, 1151
BslFI GGGAC 4 cut(s) 258, 960, 1121, 1127
BslI CCNNNNNNNGG 6 cut(s) 288, 340, 713, 830, 1150, 1151
BsmAI GTCTC 3 cut(s) 168, 218, 1073
BsmFI GGGAC 4 cut(s) 258, 960, 1121, 1127
BsnI GGCC 4 cut(s) 139, 303, 553, 640
Bsp1286I GDGCHC 2 cut(s) 127, 1158
Bsp143I GATC 6 cut(s) 112, 319, 357, 435, 751, 771
BspACI CCGC 4 cut(s) 65, 135, 524, 554
BspANI GGCC 4 cut(s) 139, 303, 553, 640
BspCNI CTCAG 1 cut(s) 424
BspLI GGNNCC 6 cut(s) 359, 389, 646, 822, 996, 1143
BspMAI CTGCAG 2 cut(s) 78, 615
BspPI GGATC 3 cut(s) 352, 365, 779
BspQI GCTCTTC 1 cut(s) 1025
BspT107I GGYRCC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 866
BsrBI CCGCTC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 850
BsrI ACTGG 3 cut(s) 92, 251, 447
BssAI RCCGGY 1 cut(s) 850
BssECI CCNNGG 4 cut(s) 140, 929, 1048, 1151
BssMI GATC 6 cut(s) 112, 319, 357, 435, 751, 771
BssNI GRCGYC 1 cut(s) 949
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 2 cut(s) 929, 1048
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 2 cut(s) 649, 657
Bst4CI ACNGT 3 cut(s) 424, 743, 1141
Bst6I CTCTTC 3 cut(s) 1025, 1122, 1152
BstACI GRCGYC 1 cut(s) 949
BstAFI CTTAAG 1 cut(s) 866
BstC8I GCNNGC 2 cut(s) 137, 558
BstDEI CTNAG 2 cut(s) 432, 975
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 6 cut(s) 28, 379, 405, 766, 880, 1109
BstKTI GATC 6 cut(s) 115, 322, 360, 438, 754, 774
BstMAI GTCTC 3 cut(s) 168, 218, 1073
BstMBI GATC 6 cut(s) 112, 319, 357, 435, 751, 771
BstMWI GCNNNNNNNGC 6 cut(s) 23, 136, 424, 553, 569, 860
BstNI CCWGG 2 cut(s) 649, 657
BstSCI CCNGG 4 cut(s) 640, 647, 655, 1150
BstSFI CTRYAG 3 cut(s) 74, 420, 611
BstSLI GKGCMC 1 cut(s) 1158
BstV1I GCAGC 6 cut(s) 284, 494, 572, 597, 625, 967
BstV2I GAAGAC 1 cut(s) 791
BstX2I RGATCY 2 cut(s) 357, 435
BstYI RGATCY 2 cut(s) 357, 435
Bsu36I CCTNAGG 1 cut(s) 975
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 4 cut(s) 139, 303, 553, 640
BtgI CCRYGG 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 6 cut(s) 28, 379, 405, 766, 880, 1109
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 3 cut(s) 71, 85, 429
Cac8I GCNNGC 2 cut(s) 137, 558
Cfr10I RCCGGY 1 cut(s) 850
Cfr13I GGNCC 6 cut(s) 137, 388, 551, 638, 704, 1141
CseI GACGC 3 cut(s) 666, 827, 957
Csp6I GTAC 1 cut(s) 732
CviAII CATG 6 cut(s) 104, 131, 305, 674, 755, 883
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 2 cut(s) 432, 975
DpnI GATC 6 cut(s) 114, 321, 359, 437, 753, 773
DpnII GATC 6 cut(s) 112, 319, 357, 435, 751, 771
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 1025, 1122, 1152
EarI CTCTTC 3 cut(s) 1025, 1122, 1152
Eco130I CCWWGG 2 cut(s) 929, 1048
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 3 cut(s) 388, 704, 1141
Eco81I CCTNAGG 1 cut(s) 975
EcoRII CCWGG 2 cut(s) 647, 655
EcoT14I CCWWGG 2 cut(s) 929, 1048
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 929, 1048
FaeI CATG 6 cut(s) 107, 134, 308, 677, 758, 886
FaqI GGGAC 4 cut(s) 258, 960, 1121, 1127
FatI CATG 6 cut(s) 103, 130, 304, 673, 754, 882
FauI CCCGC 1 cut(s) 128
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 7 cut(s) 273, 508, 554, 561, 611, 614, 981
FokI GGATG 6 cut(s) 35, 386, 412, 773, 887, 1116
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 7 cut(s) 273, 508, 554, 561, 611, 614, 981
FspBI CTAG 2 cut(s) 312, 984
GluI GCNGC 7 cut(s) 273, 508, 554, 561, 611, 614, 981
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 4 cut(s) 139, 303, 553, 640
HapII CCGG 4 cut(s) 361, 641, 851, 1151
HgaI GACGC 3 cut(s) 666, 827, 957
Hin1I GRCGYC 1 cut(s) 949
Hin1II CATG 6 cut(s) 107, 134, 308, 677, 758, 886
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 6 cut(s) 500, 516, 623, 652, 886, 1043
HpaII CCGG 4 cut(s) 361, 641, 851, 1151
HphI GGTGA 5 cut(s) 250, 379, 728, 840, 1064
Hpy166II GTNNAC 2 cut(s) 327, 622
Hpy188I TCNGA 4 cut(s) 62, 335, 799, 1196
Hpy188III TCNNGA 3 cut(s) 473, 702, 775
Hpy8I GTNNAC 2 cut(s) 327, 622
Hpy99I CGWCG 1 cut(s) 739
HpyAV CCTTC 5 cut(s) 46, 235, 269, 334, 454
HpyCH4III ACNGT 3 cut(s) 424, 743, 1141
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 9 cut(s) 7, 47, 76, 130, 427, 613, 898, 1006, 1061
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 136, 424, 553, 569, 860
HpyF3I CTNAG 2 cut(s) 432, 975
HpySE526I ACGT 1 cut(s) 734
Hsp92I GRCGYC 1 cut(s) 949
Hsp92II CATG 6 cut(s) 107, 134, 308, 677, 758, 886
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 112, 319, 357, 435, 751, 771
LguI GCTCTTC 1 cut(s) 1025
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 6 cut(s) 284, 494, 572, 597, 625, 967
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 312, 984
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 4 cut(s) 29, 52, 307, 846
MalI GATC 6 cut(s) 114, 321, 359, 437, 753, 773
MbiI CCGCTC 1 cut(s) 65
MboI GATC 6 cut(s) 112, 319, 357, 435, 751, 771
MboII GAAGA 7 cut(s) 731, 796, 946, 949, 1042, 1139, 1139
MflI RGATCY 2 cut(s) 357, 435
MhlI GDGCHC 2 cut(s) 127, 1158
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 3 cut(s) 778, 941, 1164
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 151
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 2 cut(s) 264, 867
MslI CAYNNNNRTG 3 cut(s) 334, 759, 906
Msp20I TGGCCA 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 4 cut(s) 361, 641, 851, 1151
MspR9I CCNGG 4 cut(s) 642, 649, 657, 1152
MvaI CCWGG 2 cut(s) 649, 657
MwoI GCNNNNNNNGC 6 cut(s) 23, 136, 424, 553, 569, 860
NciI CCSGG 2 cut(s) 642, 1152
NdeII GATC 6 cut(s) 112, 319, 357, 435, 751, 771
NlaIII CATG 6 cut(s) 107, 134, 308, 677, 758, 886
NlaIV GGNNCC 6 cut(s) 359, 389, 646, 822, 996, 1143
NmuCI GTSAC 3 cut(s) 52, 307, 846
PciSI GCTCTTC 1 cut(s) 1025
PfeI GAWTC 5 cut(s) 500, 516, 652, 886, 1043
PfoI TCCNGGA 2 cut(s) 647, 655
PkrI GCNGC 7 cut(s) 274, 509, 555, 562, 612, 615, 982
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 647, 655
PspGI CCWGG 2 cut(s) 647, 655
PspN4I GGNNCC 6 cut(s) 359, 389, 646, 822, 996, 1143
PspPI GGNCC 6 cut(s) 137, 388, 551, 638, 704, 1141
PstI CTGCAG 2 cut(s) 78, 615
PsuI RGATCY 2 cut(s) 357, 435
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 3 cut(s) 334, 759, 906
SalI GTCGAC 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 264, 867
SatI GCNGC 7 cut(s) 273, 508, 554, 561, 611, 614, 981
Sau3AI GATC 6 cut(s) 112, 319, 357, 435, 751, 771
Sau96I GGNCC 6 cut(s) 137, 388, 551, 638, 704, 1141
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 4 cut(s) 642, 649, 657, 1152
SduI GDGCHC 2 cut(s) 127, 1158
SetI ASST 9 cut(s) 398, 433, 698, 709, 737, 873, 976, 1054, 1177
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 3 cut(s) 74, 420, 611
SinI GGWCC 3 cut(s) 388, 704, 1141
SmiMI CAYNNNNRTG 3 cut(s) 334, 759, 906
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 3 cut(s) 778, 941, 1164
SsiI CCGC 4 cut(s) 65, 135, 524, 554
SspI AATATT 1 cut(s) 1186
SspMI CTAG 2 cut(s) 312, 984
StyD4I CCNGG 4 cut(s) 640, 647, 655, 1150
StyI CCWWGG 2 cut(s) 929, 1048
TaaI ACNGT 3 cut(s) 424, 743, 1141
TaiI ACGT 1 cut(s) 737
TaqI TCGA 3 cut(s) 39, 326, 408
TasI AATT 3 cut(s) 778, 941, 1164
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 5 cut(s) 500, 516, 652, 886, 1043
Tru1I TTAA 2 cut(s) 264, 867
Tru9I TTAA 2 cut(s) 264, 867
TscAI CASTG 3 cut(s) 78, 92, 429
TseFI GTSAC 3 cut(s) 52, 307, 846
TseI GCWGC 6 cut(s) 272, 507, 560, 610, 613, 980
Tsp45I GTSAC 3 cut(s) 52, 307, 846
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 1091
TspRI CASTG 3 cut(s) 78, 92, 429
Vha464I CTTAAG 1 cut(s) 866
VpaK11BI GGWCC 3 cut(s) 388, 704, 1141
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 2 cut(s) 312, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.