Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_S15 | PF02129 | 15 - 124 | 1e-08 | X-Pro dipeptidyl-peptidase (S15 family) |
| Hydrolase_4 | PF12146 | 57 - 169 | 2.7e-08 | Serine aminopeptidase, S33 |
| Abhydrolase_1 | PF00561 | 59 - 133 | 3.7e-07 | alpha/beta hydrolase fold |
| Abhydrolase_11 | PF20408 | 61 - 206 | 9.9e-10 | Alpha/beta hydrolase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 356 |
| Acc36I | ACCTGC | 2 cut(s) | 32, 356 |
| AccB1I | GGYRCC | 1 cut(s) | 368 |
| AciI | CCGC | 2 cut(s) | 389, 575 |
| AclWI | GGATC | 1 cut(s) | 451 |
| AcsI | RAATTY | 3 cut(s) | 325, 342, 671 |
| AcuI | CTGAAG | 2 cut(s) | 55, 575 |
| AfaI | GTAC | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 380 |
| AgsI | TTSAA | 5 cut(s) | 214, 404, 590, 605, 671 |
| AluBI | AGCT | 6 cut(s) | 55, 191, 200, 218, 565, 638 |
| AluI | AGCT | 6 cut(s) | 55, 191, 200, 218, 565, 638 |
| Alw26I | GTCTC | 4 cut(s) | 14, 29, 322, 463 |
| AlwI | GGATC | 1 cut(s) | 451 |
| Ama87I | CYCGRG | 1 cut(s) | 525 |
| AoxI | GGCC | 1 cut(s) | 169 |
| ApeKI | GCWGC | 2 cut(s) | 188, 635 |
| ApoI | RAATTY | 3 cut(s) | 325, 342, 671 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 209 |
| AspLEI | GCGC | 1 cut(s) | 635 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| AsuHPI | GGTGA | 1 cut(s) | 667 |
| AvaI | CYCGRG | 1 cut(s) | 525 |
| BaeGI | GKGCMC | 1 cut(s) | 373 |
| BanI | GGYRCC | 1 cut(s) | 368 |
| BbvI | GCAGC | 2 cut(s) | 200, 647 |
| BccI | CCATC | 4 cut(s) | 38, 491, 524, 646 |
| BciVI | GTATCC | 1 cut(s) | 444 |
| BclI | TGATCA | 1 cut(s) | 394 |
| BcoDI | GTCTC | 4 cut(s) | 14, 29, 322, 463 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfuAI | ACCTGC | 2 cut(s) | 32, 356 |
| BfuI | GTATCC | 1 cut(s) | 444 |
| BisI | GCNGC | 3 cut(s) | 189, 576, 636 |
| BlpI | GCTNAGC | 1 cut(s) | 385 |
| BlsI | GCNGC | 3 cut(s) | 190, 577, 637 |
| BmeT110I | CYCGRG | 1 cut(s) | 525 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| BmiI | GGNNCC | 2 cut(s) | 49, 370 |
| BmrI | ACTGGG | 2 cut(s) | 264, 282 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BmuI | ACTGGG | 2 cut(s) | 264, 282 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 39, 71 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 385 |
| BsaI | GGTCTC | 3 cut(s) | 14, 29, 322 |
| BsaJI | CCNNGG | 1 cut(s) | 154 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 380 |
| Bse1I | ACTGG | 3 cut(s) | 39, 259, 277 |
| Bse3DI | GCAATG | 1 cut(s) | 121 |
| BseDI | CCNNGG | 1 cut(s) | 154 |
| BseGI | GGATG | 3 cut(s) | 139, 298, 483 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BseMI | GCAATG | 1 cut(s) | 121 |
| BseMII | CTCAG | 3 cut(s) | 192, 312, 399 |
| BseNI | ACTGG | 3 cut(s) | 39, 259, 277 |
| BseRI | GAGGAG | 1 cut(s) | 252 |
| BseSI | GKGCMC | 1 cut(s) | 373 |
| BseXI | GCAGC | 2 cut(s) | 200, 647 |
| BseYI | CCCAGC | 1 cut(s) | 191 |
| BsgI | GTGCAG | 1 cut(s) | 10 |
| Bsh1285I | CGRYCG | 1 cut(s) | 18 |
| BshFI | GGCC | 1 cut(s) | 171 |
| BshNI | GGYRCC | 1 cut(s) | 368 |
| BsiEI | CGRYCG | 1 cut(s) | 18 |
| BsiHKCI | CYCGRG | 1 cut(s) | 525 |
| BslFI | GGGAC | 1 cut(s) | 535 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BsmAI | GTCTC | 4 cut(s) | 14, 29, 322, 463 |
| BsmFI | GGGAC | 1 cut(s) | 535 |
| BsnI | GGCC | 1 cut(s) | 171 |
| Bso31I | GGTCTC | 3 cut(s) | 14, 29, 322 |
| BsoBI | CYCGRG | 1 cut(s) | 525 |
| Bsp1286I | GDGCHC | 1 cut(s) | 373 |
| Bsp143I | GATC | 3 cut(s) | 118, 394, 456 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 385 |
| BspACI | CCGC | 2 cut(s) | 389, 575 |
| BspANI | GGCC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 3 cut(s) | 193, 313, 398 |
| BspLI | GGNNCC | 2 cut(s) | 49, 370 |
| BspMAI | CTGCAG | 1 cut(s) | 367 |
| BspMI | ACCTGC | 2 cut(s) | 32, 356 |
| BspPI | GGATC | 1 cut(s) | 451 |
| BspQI | GCTCTTC | 1 cut(s) | 74 |
| BspT107I | GGYRCC | 1 cut(s) | 368 |
| BspTNI | GGTCTC | 3 cut(s) | 14, 29, 322 |
| BsrDI | GCAATG | 1 cut(s) | 121 |
| BsrI | ACTGG | 3 cut(s) | 39, 259, 277 |
| BssECI | CCNNGG | 1 cut(s) | 154 |
| BssMI | GATC | 3 cut(s) | 118, 394, 456 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 3 cut(s) | 11, 16, 31 |
| Bst6I | CTCTTC | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 1 cut(s) | 382 |
| BstDEI | CTNAG | 4 cut(s) | 201, 321, 385, 566 |
| BstF5I | GGATG | 3 cut(s) | 139, 298, 483 |
| BstHHI | GCGC | 1 cut(s) | 635 |
| BstKTI | GATC | 3 cut(s) | 121, 397, 459 |
| BstMAI | GTCTC | 4 cut(s) | 14, 29, 322, 463 |
| BstMBI | GATC | 3 cut(s) | 118, 394, 456 |
| BstMCI | CGRYCG | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 168, 197, 377, 386 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstSLI | GKGCMC | 1 cut(s) | 373 |
| BstV1I | GCAGC | 2 cut(s) | 200, 647 |
| BsuI | GTATCC | 1 cut(s) | 444 |
| BsuRI | GGCC | 1 cut(s) | 171 |
| BtsCI | GGATG | 3 cut(s) | 139, 298, 483 |
| BtsIMutI | CAGTG | 1 cut(s) | 46 |
| BveI | ACCTGC | 2 cut(s) | 32, 356 |
| Cac8I | GCNNGC | 1 cut(s) | 382 |
| CfoI | GCGC | 1 cut(s) | 635 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| Csp6I | GTAC | 1 cut(s) | 12 |
| CviAII | CATG | 1 cut(s) | 232 |
| CviQI | GTAC | 1 cut(s) | 12 |
| DdeI | CTNAG | 4 cut(s) | 201, 321, 385, 566 |
| DpnI | GATC | 3 cut(s) | 120, 396, 458 |
| DpnII | GATC | 3 cut(s) | 118, 394, 456 |
| Eam1104I | CTCTTC | 1 cut(s) | 74 |
| EarI | CTCTTC | 1 cut(s) | 74 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco31I | GGTCTC | 3 cut(s) | 14, 29, 322 |
| Eco57I | CTGAAG | 2 cut(s) | 55, 575 |
| Eco88I | CYCGRG | 1 cut(s) | 525 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| FaeI | CATG | 1 cut(s) | 235 |
| FaiI | YATR | 4 cut(s) | 185, 233, 420, 642 |
| FaqI | GGGAC | 1 cut(s) | 535 |
| FatI | CATG | 1 cut(s) | 231 |
| FbaI | TGATCA | 1 cut(s) | 394 |
| Fnu4HI | GCNGC | 3 cut(s) | 189, 576, 636 |
| FokI | GGATG | 3 cut(s) | 126, 305, 470 |
| Fsp4HI | GCNGC | 3 cut(s) | 189, 576, 636 |
| GlaI | GCGC | 1 cut(s) | 634 |
| GluI | GCNGC | 3 cut(s) | 189, 576, 636 |
| GsaI | CCCAGC | 1 cut(s) | 195 |
| HaeIII | GGCC | 1 cut(s) | 171 |
| HhaI | GCGC | 1 cut(s) | 635 |
| Hin1II | CATG | 1 cut(s) | 235 |
| Hin6I | GCGC | 1 cut(s) | 633 |
| HinP1I | GCGC | 1 cut(s) | 633 |
| HincII | GTYRAC | 1 cut(s) | 252 |
| HindII | GTYRAC | 1 cut(s) | 252 |
| HinfI | GANTC | 3 cut(s) | 424, 523, 658 |
| HphI | GGTGA | 1 cut(s) | 667 |
| Hpy166II | GTNNAC | 2 cut(s) | 252, 537 |
| Hpy188I | TCNGA | 3 cut(s) | 74, 322, 399 |
| Hpy188III | TCNNGA | 2 cut(s) | 19, 527 |
| Hpy8I | GTNNAC | 2 cut(s) | 252, 537 |
| HpyAV | CCTTC | 4 cut(s) | 100, 253, 599, 623 |
| HpyCH4III | ACNGT | 3 cut(s) | 11, 16, 31 |
| HpyCH4V | TGCA | 6 cut(s) | 27, 139, 281, 309, 365, 380 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 168, 197, 377, 386 |
| HpyF3I | CTNAG | 4 cut(s) | 201, 321, 385, 566 |
| Hsp92II | CATG | 1 cut(s) | 235 |
| HspAI | GCGC | 1 cut(s) | 633 |
| Ksp22I | TGATCA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 118, 394, 456 |
| LguI | GCTCTTC | 1 cut(s) | 74 |
| LmnI | GCTCC | 1 cut(s) | 47 |
| Lsp1109I | GCAGC | 2 cut(s) | 200, 647 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeIII | GTNAC | 2 cut(s) | 220, 445 |
| MalI | GATC | 3 cut(s) | 120, 396, 458 |
| MboI | GATC | 3 cut(s) | 118, 394, 456 |
| MboII | GAAGA | 3 cut(s) | 61, 351, 568 |
| MfeI | CAATTG | 1 cut(s) | 375 |
| MhlI | GDGCHC | 1 cut(s) | 373 |
| MluCI | AATT | 4 cut(s) | 325, 342, 375, 671 |
| MlyI | GAGTC | 2 cut(s) | 433, 517 |
| MnlI | CCTC | 5 cut(s) | 103, 173, 230, 240, 463 |
| MroXI | GAANNNNTTC | 1 cut(s) | 209 |
| MspA1I | CMGCKG | 2 cut(s) | 191, 389 |
| MunI | CAATTG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 168, 197, 377, 386 |
| NdeII | GATC | 3 cut(s) | 118, 394, 456 |
| NlaIII | CATG | 1 cut(s) | 235 |
| NlaIV | GGNNCC | 2 cut(s) | 49, 370 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| PaeR7I | CTCGAG | 1 cut(s) | 525 |
| PaqCI | CACCTGC | 1 cut(s) | 356 |
| PciSI | GCTCTTC | 1 cut(s) | 74 |
| PdmI | GAANNNNTTC | 1 cut(s) | 209 |
| PfeI | GAWTC | 1 cut(s) | 658 |
| PkrI | GCNGC | 3 cut(s) | 190, 577, 637 |
| PleI | GAGTC | 2 cut(s) | 432, 517 |
| PpsI | GAGTC | 2 cut(s) | 432, 517 |
| PspFI | CCCAGC | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 2 cut(s) | 49, 370 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| PstI | CTGCAG | 1 cut(s) | 367 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RsaI | GTAC | 1 cut(s) | 13 |
| RsaNI | GTAC | 1 cut(s) | 12 |
| SapI | GCTCTTC | 1 cut(s) | 74 |
| SatI | GCNGC | 3 cut(s) | 189, 576, 636 |
| Sau3AI | GATC | 3 cut(s) | 118, 394, 456 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| SchI | GAGTC | 2 cut(s) | 433, 517 |
| SduI | GDGCHC | 1 cut(s) | 373 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| Sfr274I | CTCGAG | 1 cut(s) | 525 |
| SlaI | CTCGAG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 1 cut(s) | 525 |
| SmoI | CTYRAG | 1 cut(s) | 525 |
| Sse9I | AATT | 4 cut(s) | 325, 342, 375, 671 |
| SsiI | CCGC | 2 cut(s) | 389, 575 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 3 cut(s) | 11, 16, 31 |
| TaqI | TCGA | 3 cut(s) | 18, 455, 526 |
| TasI | AATT | 4 cut(s) | 325, 342, 375, 671 |
| TauI | GCSGC | 1 cut(s) | 578 |
| TfiI | GAWTC | 1 cut(s) | 658 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| TseI | GCWGC | 2 cut(s) | 188, 635 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 1 cut(s) | 119 |
| TspRI | CASTG | 1 cut(s) | 46 |
| XapI | RAATTY | 3 cut(s) | 325, 342, 671 |
| XhoI | CTCGAG | 1 cut(s) | 525 |
| XmnI | GAANNNNTTC | 1 cut(s) | 209 |