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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 49 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 220 |
| AciI | CCGC | 2 cut(s) | 218, 752 |
| AclWI | GGATC | 1 cut(s) | 89 |
| AcuI | CTGAAG | 1 cut(s) | 488 |
| AfaI | GTAC | 2 cut(s) | 193, 787 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 185, 220, 254, 331 |
| AgsI | TTSAA | 3 cut(s) | 416, 673, 680 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 509, 541 |
| AluBI | AGCT | 6 cut(s) | 20, 60, 422, 446, 502, 643 |
| AluI | AGCT | 6 cut(s) | 20, 60, 422, 446, 502, 643 |
| Alw21I | GWGCWC | 1 cut(s) | 62 |
| Alw26I | GTCTC | 4 cut(s) | 57, 526, 580, 760 |
| AlwI | GGATC | 1 cut(s) | 89 |
| ApeKI | GCWGC | 4 cut(s) | 32, 419, 532, 535 |
| AspA2I | CCTAGG | 1 cut(s) | 392 |
| AspS9I | GGNCC | 2 cut(s) | 245, 314 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 746, 798 |
| AvaII | GGWCC | 2 cut(s) | 245, 314 |
| AvrII | CCTAGG | 1 cut(s) | 392 |
| BanII | GRGCYC | 1 cut(s) | 62 |
| Bbv12I | GWGCWC | 1 cut(s) | 62 |
| BbvI | GCAGC | 4 cut(s) | 44, 431, 519, 547 |
| BccI | CCATC | 4 cut(s) | 109, 325, 550, 730 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BcoDI | GTCTC | 4 cut(s) | 57, 526, 580, 760 |
| BfaI | CTAG | 1 cut(s) | 393 |
| BfmI | CTRYAG | 2 cut(s) | 198, 533 |
| BisI | GCNGC | 4 cut(s) | 33, 420, 533, 536 |
| BlnI | CCTAGG | 1 cut(s) | 392 |
| BlsI | GCNGC | 4 cut(s) | 34, 421, 534, 537 |
| Bme1390I | CCNGG | 1 cut(s) | 312 |
| Bme18I | GGWCC | 2 cut(s) | 245, 314 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 314 |
| BmiI | GGNNCC | 1 cut(s) | 246 |
| BmrFI | CCNGG | 1 cut(s) | 312 |
| BmrI | ACTGGG | 1 cut(s) | 387 |
| BmsI | GCATC | 2 cut(s) | 214, 607 |
| BmuI | ACTGGG | 1 cut(s) | 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 506, 538 |
| BpmI | CTGGAG | 1 cut(s) | 408 |
| BsaI | GGTCTC | 2 cut(s) | 580, 760 |
| BsaJI | CCNNGG | 2 cut(s) | 231, 392 |
| BsaWI | WCCGGW | 1 cut(s) | 89 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 185, 220, 254, 331 |
| Bse1I | ACTGG | 3 cut(s) | 49, 382, 425 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseDI | CCNNGG | 2 cut(s) | 231, 392 |
| BseGI | GGATG | 3 cut(s) | 120, 229, 637 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 185, 220, 254, 331 |
| BseMII | CTCAG | 2 cut(s) | 47, 658 |
| BseNI | ACTGG | 3 cut(s) | 49, 382, 425 |
| BseRI | GAGGAG | 3 cut(s) | 23, 527, 701 |
| BseXI | GCAGC | 4 cut(s) | 44, 431, 519, 547 |
| BsgI | GTGCAG | 1 cut(s) | 795 |
| BsiHKAI | GWGCWC | 1 cut(s) | 62 |
| BsiSI | CCGG | 1 cut(s) | 90 |
| BslFI | GGGAC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 185, 220, 254, 331 |
| BsmAI | GTCTC | 4 cut(s) | 57, 526, 580, 760 |
| BsmFI | GGGAC | 1 cut(s) | 388 |
| Bso31I | GGTCTC | 2 cut(s) | 580, 760 |
| Bsp1286I | GDGCHC | 1 cut(s) | 62 |
| Bsp143I | GATC | 1 cut(s) | 94 |
| BspACI | CCGC | 2 cut(s) | 218, 752 |
| BspCNI | CTCAG | 2 cut(s) | 48, 657 |
| BspHI | TCATGA | 1 cut(s) | 153 |
| BspLI | GGNNCC | 1 cut(s) | 246 |
| BspMAI | CTGCAG | 2 cut(s) | 202, 537 |
| BspPI | GGATC | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 2 cut(s) | 580, 760 |
| BsrI | ACTGG | 3 cut(s) | 49, 382, 425 |
| BssECI | CCNNGG | 2 cut(s) | 231, 392 |
| BssMI | GATC | 1 cut(s) | 94 |
| BssT1I | CCWWGG | 2 cut(s) | 231, 392 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 1 cut(s) | 790 |
| Bst6I | CTCTTC | 1 cut(s) | 417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 773 |
| BstC8I | GCNNGC | 3 cut(s) | 285, 453, 713 |
| BstDEI | CTNAG | 3 cut(s) | 56, 354, 644 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 329 |
| BstF5I | GGATG | 3 cut(s) | 120, 229, 637 |
| BstKTI | GATC | 1 cut(s) | 97 |
| BstMAI | GTCTC | 4 cut(s) | 57, 526, 580, 760 |
| BstMBI | GATC | 1 cut(s) | 94 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 224, 452, 698, 773 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstNSI | RCATGY | 2 cut(s) | 455, 715 |
| BstSCI | CCNGG | 1 cut(s) | 310 |
| BstSFI | CTRYAG | 2 cut(s) | 198, 533 |
| BstV1I | GCAGC | 4 cut(s) | 44, 431, 519, 547 |
| BtsCI | GGATG | 3 cut(s) | 120, 229, 637 |
| BtsI | GCAGTG | 2 cut(s) | 207, 783 |
| BtsIMutI | CAGTG | 3 cut(s) | 207, 360, 783 |
| Cac8I | GCNNGC | 3 cut(s) | 285, 453, 713 |
| CciI | TCATGA | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 314 |
| CsiI | ACCWGGT | 1 cut(s) | 310 |
| Csp6I | GTAC | 2 cut(s) | 192, 786 |
| CviAII | CATG | 5 cut(s) | 134, 154, 303, 452, 712 |
| CviQI | GTAC | 2 cut(s) | 192, 786 |
| DdeI | CTNAG | 3 cut(s) | 56, 354, 644 |
| DpnI | GATC | 1 cut(s) | 96 |
| DpnII | GATC | 1 cut(s) | 94 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 49 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 49 |
| Eam1104I | CTCTTC | 1 cut(s) | 417 |
| EarI | CTCTTC | 1 cut(s) | 417 |
| Ecl136II | GAGCTC | 1 cut(s) | 60 |
| Eco130I | CCWWGG | 2 cut(s) | 231, 392 |
| Eco24I | GRGCYC | 1 cut(s) | 62 |
| Eco31I | GGTCTC | 2 cut(s) | 580, 760 |
| Eco47I | GGWCC | 2 cut(s) | 245, 314 |
| Eco53kI | GAGCTC | 1 cut(s) | 60 |
| Eco57I | CTGAAG | 1 cut(s) | 488 |
| EcoICRI | GAGCTC | 1 cut(s) | 60 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 329 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 2 cut(s) | 231, 392 |
| EcoT38I | GRGCYC | 1 cut(s) | 62 |
| ErhI | CCWWGG | 2 cut(s) | 231, 392 |
| FaeI | CATG | 5 cut(s) | 137, 157, 306, 455, 715 |
| FaiI | YATR | 9 cut(s) | 135, 155, 296, 304, 453, 540, 654, 713, 743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 659, 691 |
| FaqI | GGGAC | 1 cut(s) | 388 |
| FatI | CATG | 5 cut(s) | 133, 153, 302, 451, 711 |
| Fnu4HI | GCNGC | 4 cut(s) | 33, 420, 533, 536 |
| FokI | GGATG | 3 cut(s) | 127, 236, 644 |
| FriOI | GRGCYC | 1 cut(s) | 62 |
| Fsp4HI | GCNGC | 4 cut(s) | 33, 420, 533, 536 |
| FspBI | CTAG | 1 cut(s) | 393 |
| GluI | GCNGC | 4 cut(s) | 33, 420, 533, 536 |
| GsuI | CTGGAG | 1 cut(s) | 408 |
| HapII | CCGG | 1 cut(s) | 90 |
| Hin1II | CATG | 5 cut(s) | 137, 157, 306, 455, 715 |
| HindIII | AAGCTT | 1 cut(s) | 500 |
| HinfI | GANTC | 2 cut(s) | 344, 494 |
| HpaII | CCGG | 1 cut(s) | 90 |
| HphI | GGTGA | 3 cut(s) | 104, 746, 798 |
| Hpy166II | GTNNAC | 2 cut(s) | 360, 551 |
| Hpy188I | TCNGA | 4 cut(s) | 57, 64, 180, 647 |
| Hpy188III | TCNNGA | 3 cut(s) | 98, 154, 491 |
| Hpy8I | GTNNAC | 2 cut(s) | 360, 551 |
| HpyAV | CCTTC | 3 cut(s) | 199, 788, 819 |
| HpyCH4III | ACNGT | 1 cut(s) | 790 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 224, 452, 698, 773 |
| HpyF3I | CTNAG | 3 cut(s) | 56, 354, 644 |
| Hsp92II | CATG | 5 cut(s) | 137, 157, 306, 455, 715 |
| Kzo9I | GATC | 1 cut(s) | 94 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| Lsp1109I | GCAGC | 4 cut(s) | 44, 431, 519, 547 |
| LweI | GCATC | 2 cut(s) | 214, 607 |
| MabI | ACCWGGT | 1 cut(s) | 310 |
| MaeI | CTAG | 1 cut(s) | 393 |
| MaeIII | GTNAC | 1 cut(s) | 804 |
| MalI | GATC | 1 cut(s) | 96 |
| MboI | GATC | 1 cut(s) | 94 |
| MboII | GAAGA | 4 cut(s) | 399, 404, 586, 649 |
| MhlI | GDGCHC | 1 cut(s) | 62 |
| MluCI | AATT | 3 cut(s) | 680, 696, 825 |
| MlyI | GAGTC | 1 cut(s) | 488 |
| MmeI | TCCRAC | 1 cut(s) | 409 |
| MseI | TTAA | 5 cut(s) | 15, 279, 386, 824, 829 |
| MslI | CAYNNNNRTG | 3 cut(s) | 158, 543, 716 |
| MspI | CCGG | 1 cut(s) | 90 |
| MspR9I | CCNGG | 1 cut(s) | 312 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 224, 452, 698, 773 |
| NdeII | GATC | 1 cut(s) | 94 |
| NlaIII | CATG | 5 cut(s) | 137, 157, 306, 455, 715 |
| NlaIV | GGNNCC | 1 cut(s) | 246 |
| NmuCI | GTSAC | 1 cut(s) | 804 |
| NspI | RCATGY | 2 cut(s) | 455, 715 |
| PaeI | GCATGC | 2 cut(s) | 455, 715 |
| PagI | TCATGA | 1 cut(s) | 153 |
| PfeI | GAWTC | 1 cut(s) | 344 |
| PflFI | GACNNNGTC | 1 cut(s) | 312 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 220 |
| PkrI | GCNGC | 4 cut(s) | 34, 421, 534, 537 |
| PleI | GAGTC | 1 cut(s) | 488 |
| PpsI | GAGTC | 1 cut(s) | 488 |
| Psp124BI | GAGCTC | 1 cut(s) | 62 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 1 cut(s) | 246 |
| PspPI | GGNCC | 2 cut(s) | 245, 314 |
| PstI | CTGCAG | 2 cut(s) | 202, 537 |
| PsyI | GACNNNGTC | 1 cut(s) | 312 |
| RsaI | GTAC | 2 cut(s) | 193, 787 |
| RsaNI | GTAC | 2 cut(s) | 192, 786 |
| RseI | CAYNNNNRTG | 3 cut(s) | 158, 543, 716 |
| SacI | GAGCTC | 1 cut(s) | 62 |
| SaqAI | TTAA | 5 cut(s) | 15, 279, 386, 824, 829 |
| SatI | GCNGC | 4 cut(s) | 33, 420, 533, 536 |
| Sau3AI | GATC | 1 cut(s) | 94 |
| Sau96I | GGNCC | 2 cut(s) | 245, 314 |
| SchI | GAGTC | 1 cut(s) | 488 |
| ScrFI | CCNGG | 1 cut(s) | 312 |
| SduI | GDGCHC | 1 cut(s) | 62 |
| SexAI | ACCWGGT | 1 cut(s) | 310 |
| SfaNI | GCATC | 2 cut(s) | 214, 607 |
| SfcI | CTRYAG | 2 cut(s) | 198, 533 |
| SinI | GGWCC | 2 cut(s) | 245, 314 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 158, 543, 716 |
| SphI | GCATGC | 2 cut(s) | 455, 715 |
| Sse9I | AATT | 3 cut(s) | 680, 696, 825 |
| SsiI | CCGC | 2 cut(s) | 218, 752 |
| SspMI | CTAG | 1 cut(s) | 393 |
| SstI | GAGCTC | 1 cut(s) | 62 |
| StyD4I | CCNGG | 1 cut(s) | 310 |
| StyI | CCWWGG | 2 cut(s) | 231, 392 |
| TaaI | ACNGT | 1 cut(s) | 790 |
| TaqI | TCGA | 2 cut(s) | 273, 497 |
| TasI | AATT | 3 cut(s) | 680, 696, 825 |
| TfiI | GAWTC | 1 cut(s) | 344 |
| Tru1I | TTAA | 5 cut(s) | 15, 279, 386, 824, 829 |
| Tru9I | TTAA | 5 cut(s) | 15, 279, 386, 824, 829 |
| TscAI | CASTG | 3 cut(s) | 207, 367, 783 |
| TseFI | GTSAC | 1 cut(s) | 804 |
| TseI | GCWGC | 4 cut(s) | 32, 419, 532, 535 |
| Tsp45I | GTSAC | 1 cut(s) | 804 |
| TspRI | CASTG | 3 cut(s) | 207, 367, 783 |
| Tth111I | GACNNNGTC | 1 cut(s) | 312 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 220 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 314 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 329 |
| XceI | RCATGY | 2 cut(s) | 455, 715 |
| XmaJI | CCTAGG | 1 cut(s) | 392 |
| XspI | CTAG | 1 cut(s) | 393 |