Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 382, 413, 506 |
| AclWI | GGATC | 6 cut(s) | 35, 80, 206, 592, 603, 859 |
| AcoI | YGGCCR | 1 cut(s) | 685 |
| AcuI | CTGAAG | 1 cut(s) | 944 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 544 |
| AgsI | TTSAA | 4 cut(s) | 175, 269, 430, 518 |
| AjnI | CCWGG | 3 cut(s) | 532, 589, 721 |
| AleI | CACNNNNGTG | 1 cut(s) | 693 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 98, 130 |
| AluBI | AGCT | 4 cut(s) | 634, 668, 928, 975 |
| AluI | AGCT | 4 cut(s) | 634, 668, 928, 975 |
| Alw26I | GTCTC | 1 cut(s) | 641 |
| AlwI | GGATC | 6 cut(s) | 35, 80, 206, 592, 603, 859 |
| Ama87I | CYCGRG | 1 cut(s) | 891 |
| AoxI | GGCC | 2 cut(s) | 535, 685 |
| ApeKI | GCWGC | 4 cut(s) | 4, 392, 503, 634 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 247 |
| AspS9I | GGNCC | 1 cut(s) | 536 |
| AsuC2I | CCSGG | 2 cut(s) | 302, 952 |
| AsuHPI | GGTGA | 3 cut(s) | 326, 538, 579 |
| AvaI | CYCGRG | 1 cut(s) | 891 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 468, 501 |
| BalI | TGGCCA | 1 cut(s) | 687 |
| BanII | GRGCYC | 1 cut(s) | 454 |
| BbsI | GAAGAC | 1 cut(s) | 937 |
| BbvI | GCAGC | 3 cut(s) | 379, 490, 621 |
| BccI | CCATC | 5 cut(s) | 17, 199, 403, 547, 755 |
| BciT130I | CCWGG | 3 cut(s) | 534, 591, 723 |
| BclI | TGATCA | 2 cut(s) | 331, 810 |
| BcnI | CCSGG | 2 cut(s) | 302, 952 |
| BcoDI | GTCTC | 1 cut(s) | 641 |
| BfaI | CTAG | 3 cut(s) | 438, 447, 737 |
| BfmI | CTRYAG | 2 cut(s) | 393, 876 |
| BisI | GCNGC | 4 cut(s) | 5, 393, 504, 635 |
| BlsI | GCNGC | 4 cut(s) | 6, 394, 505, 636 |
| Bme1390I | CCNGG | 5 cut(s) | 302, 534, 591, 723, 952 |
| BmeT110I | CYCGRG | 1 cut(s) | 891 |
| BmgT120I | GGNCC | 1 cut(s) | 536 |
| BmrFI | CCNGG | 5 cut(s) | 302, 534, 591, 723, 952 |
| BmsI | GCATC | 2 cut(s) | 394, 877 |
| BpiI | GAAGAC | 1 cut(s) | 937 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 932, 964 |
| BpmI | CTGGAG | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 3 cut(s) | 482, 953, 955 |
| BpuMI | CCSGG | 2 cut(s) | 302, 952 |
| BsaJI | CCNNGG | 6 cut(s) | 261, 301, 590, 780, 846, 951 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 544 |
| Bse1I | ACTGG | 2 cut(s) | 286, 463 |
| BseBI | CCWGG | 3 cut(s) | 534, 591, 723 |
| BseDI | CCNNGG | 6 cut(s) | 261, 301, 590, 780, 846, 951 |
| BseGI | GGATG | 6 cut(s) | 210, 280, 409, 766, 805, 892 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 544 |
| BseMII | CTCAG | 1 cut(s) | 806 |
| BseNI | ACTGG | 2 cut(s) | 286, 463 |
| BseRI | GAGGAG | 3 cut(s) | 250, 950, 953 |
| BseXI | GCAGC | 3 cut(s) | 379, 490, 621 |
| BshFI | GGCC | 2 cut(s) | 537, 687 |
| BsiHKCI | CYCGRG | 1 cut(s) | 891 |
| BsiSI | CCGG | 2 cut(s) | 301, 951 |
| BslFI | GGGAC | 1 cut(s) | 100 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 544 |
| BsmAI | GTCTC | 1 cut(s) | 641 |
| BsmFI | GGGAC | 1 cut(s) | 100 |
| BsnI | GGCC | 2 cut(s) | 537, 687 |
| BsoBI | CYCGRG | 1 cut(s) | 891 |
| Bsp1286I | GDGCHC | 1 cut(s) | 454 |
| BspACI | CCGC | 3 cut(s) | 382, 413, 506 |
| BspANI | GGCC | 2 cut(s) | 537, 687 |
| BspCNI | CTCAG | 1 cut(s) | 805 |
| BspMAI | CTGCAG | 2 cut(s) | 397, 880 |
| BspPI | GGATC | 6 cut(s) | 35, 80, 206, 592, 603, 859 |
| BsrI | ACTGG | 2 cut(s) | 286, 463 |
| BssECI | CCNNGG | 6 cut(s) | 261, 301, 590, 780, 846, 951 |
| BssT1I | CCWWGG | 1 cut(s) | 846 |
| Bst2UI | CCWGG | 3 cut(s) | 534, 591, 723 |
| Bst4CI | ACNGT | 3 cut(s) | 79, 166, 320 |
| Bst6I | CTCTTC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 2 cut(s) | 382, 639 |
| BstDEI | CTNAG | 3 cut(s) | 10, 654, 792 |
| BstDSI | CCRYGG | 1 cut(s) | 780 |
| BstF5I | GGATG | 6 cut(s) | 210, 280, 409, 766, 805, 892 |
| BstMAI | GTCTC | 1 cut(s) | 641 |
| BstNI | CCWGG | 3 cut(s) | 534, 591, 723 |
| BstSCI | CCNGG | 5 cut(s) | 300, 532, 589, 721, 950 |
| BstSFI | CTRYAG | 2 cut(s) | 393, 876 |
| BstV1I | GCAGC | 3 cut(s) | 379, 490, 621 |
| BstV2I | GAAGAC | 1 cut(s) | 937 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 695 |
| BsuRI | GGCC | 2 cut(s) | 537, 687 |
| BtgI | CCRYGG | 1 cut(s) | 780 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtsCI | GGATG | 6 cut(s) | 210, 280, 409, 766, 805, 892 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 688 |
| Cac8I | GCNNGC | 2 cut(s) | 382, 639 |
| Cfr13I | GGNCC | 1 cut(s) | 536 |
| CseI | GACGC | 1 cut(s) | 707 |
| CviAII | CATG | 1 cut(s) | 124 |
| DdeI | CTNAG | 3 cut(s) | 10, 654, 792 |
| EaeI | YGGCCR | 1 cut(s) | 685 |
| Eam1104I | CTCTTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 846 |
| Eco24I | GRGCYC | 1 cut(s) | 454 |
| Eco57I | CTGAAG | 1 cut(s) | 944 |
| Eco88I | CYCGRG | 1 cut(s) | 891 |
| EcoRII | CCWGG | 3 cut(s) | 532, 589, 721 |
| EcoT14I | CCWWGG | 1 cut(s) | 846 |
| EcoT38I | GRGCYC | 1 cut(s) | 454 |
| ErhI | CCWWGG | 1 cut(s) | 846 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 9 cut(s) | 21, 57, 125, 135, 291, 464, 575, 758, 912 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 235, 267 |
| FaqI | GGGAC | 1 cut(s) | 100 |
| FatI | CATG | 1 cut(s) | 123 |
| FauI | CCCGC | 3 cut(s) | 389, 406, 499 |
| FbaI | TGATCA | 2 cut(s) | 331, 810 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 393, 504, 635 |
| FokI | GGATG | 6 cut(s) | 217, 287, 416, 773, 812, 899 |
| FriOI | GRGCYC | 1 cut(s) | 454 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 393, 504, 635 |
| FspBI | CTAG | 3 cut(s) | 438, 447, 737 |
| GluI | GCNGC | 4 cut(s) | 5, 393, 504, 635 |
| GsuI | CTGGAG | 1 cut(s) | 83 |
| HaeIII | GGCC | 2 cut(s) | 537, 687 |
| HapII | CCGG | 2 cut(s) | 301, 951 |
| HgaI | GACGC | 1 cut(s) | 707 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HindIII | AAGCTT | 2 cut(s) | 666, 926 |
| HinfI | GANTC | 2 cut(s) | 495, 772 |
| HpaII | CCGG | 2 cut(s) | 301, 951 |
| HphI | GGTGA | 3 cut(s) | 326, 538, 579 |
| Hpy188I | TCNGA | 5 cut(s) | 105, 131, 456, 795, 924 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 202, 314, 367, 932 |
| HpyAV | CCTTC | 8 cut(s) | 219, 338, 364, 756, 790, 826, 877, 950 |
| HpyCH4III | ACNGT | 3 cut(s) | 79, 166, 320 |
| HpyCH4IV | ACGT | 1 cut(s) | 556 |
| HpyCH4V | TGCA | 4 cut(s) | 395, 469, 615, 878 |
| HpyF3I | CTNAG | 3 cut(s) | 10, 654, 792 |
| HpySE526I | ACGT | 1 cut(s) | 556 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 2 cut(s) | 331, 810 |
| Lsp1109I | GCAGC | 3 cut(s) | 379, 490, 621 |
| LweI | GCATC | 2 cut(s) | 394, 877 |
| MaeI | CTAG | 3 cut(s) | 438, 447, 737 |
| MaeII | ACGT | 1 cut(s) | 556 |
| MaeIII | GTNAC | 4 cut(s) | 277, 314, 732, 819 |
| MboII | GAAGA | 4 cut(s) | 44, 418, 841, 937 |
| MhlI | GDGCHC | 1 cut(s) | 454 |
| MlsI | TGGCCA | 1 cut(s) | 687 |
| MluCI | AATT | 1 cut(s) | 430 |
| MluNI | TGGCCA | 1 cut(s) | 687 |
| MlyI | GAGTC | 1 cut(s) | 489 |
| Mox20I | TGGCCA | 1 cut(s) | 687 |
| MroXI | GAANNNNTTC | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 687 |
| MseI | TTAA | 4 cut(s) | 44, 239, 579, 867 |
| MslI | CAYNNNNRTG | 1 cut(s) | 693 |
| Msp20I | TGGCCA | 1 cut(s) | 687 |
| MspA1I | CMGCKG | 1 cut(s) | 634 |
| MspI | CCGG | 2 cut(s) | 301, 951 |
| MspR9I | CCNGG | 5 cut(s) | 302, 534, 591, 723, 952 |
| MvaI | CCWGG | 3 cut(s) | 534, 591, 723 |
| NciI | CCSGG | 2 cut(s) | 302, 952 |
| NlaIII | CATG | 1 cut(s) | 127 |
| NmuCI | GTSAC | 3 cut(s) | 277, 314, 819 |
| OliI | CACNNNNGTG | 1 cut(s) | 693 |
| PaeR7I | CTCGAG | 1 cut(s) | 891 |
| PdmI | GAANNNNTTC | 1 cut(s) | 247 |
| PfeI | GAWTC | 1 cut(s) | 772 |
| PkrI | GCNGC | 4 cut(s) | 6, 394, 505, 636 |
| PleI | GAGTC | 1 cut(s) | 489 |
| PpsI | GAGTC | 1 cut(s) | 489 |
| Psp6I | CCWGG | 3 cut(s) | 532, 589, 721 |
| PspGI | CCWGG | 3 cut(s) | 532, 589, 721 |
| PspPI | GGNCC | 1 cut(s) | 536 |
| PspXI | VCTCGAGB | 1 cut(s) | 891 |
| PstI | CTGCAG | 2 cut(s) | 397, 880 |
| PvuII | CAGCTG | 1 cut(s) | 634 |
| RseI | CAYNNNNRTG | 1 cut(s) | 693 |
| SaqAI | TTAA | 4 cut(s) | 44, 239, 579, 867 |
| SatI | GCNGC | 4 cut(s) | 5, 393, 504, 635 |
| Sau96I | GGNCC | 1 cut(s) | 536 |
| SchI | GAGTC | 1 cut(s) | 489 |
| ScrFI | CCNGG | 5 cut(s) | 302, 534, 591, 723, 952 |
| SduI | GDGCHC | 1 cut(s) | 454 |
| SfaNI | GCATC | 2 cut(s) | 394, 877 |
| SfcI | CTRYAG | 2 cut(s) | 393, 876 |
| Sfr274I | CTCGAG | 1 cut(s) | 891 |
| SlaI | CTCGAG | 1 cut(s) | 891 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 693 |
| SmlI | CTYRAG | 4 cut(s) | 497, 891, 932, 970 |
| SmoI | CTYRAG | 4 cut(s) | 497, 891, 932, 970 |
| Sse9I | AATT | 1 cut(s) | 430 |
| SsiI | CCGC | 3 cut(s) | 382, 413, 506 |
| SspMI | CTAG | 3 cut(s) | 438, 447, 737 |
| StyD4I | CCNGG | 5 cut(s) | 300, 532, 589, 721, 950 |
| StyI | CCWWGG | 1 cut(s) | 846 |
| TaaI | ACNGT | 3 cut(s) | 79, 166, 320 |
| TaiI | ACGT | 1 cut(s) | 559 |
| TaqI | TCGA | 2 cut(s) | 82, 892 |
| TasI | AATT | 1 cut(s) | 430 |
| TfiI | GAWTC | 1 cut(s) | 772 |
| Tru1I | TTAA | 4 cut(s) | 44, 239, 579, 867 |
| Tru9I | TTAA | 4 cut(s) | 44, 239, 579, 867 |
| TscAI | CASTG | 2 cut(s) | 82, 688 |
| TseFI | GTSAC | 3 cut(s) | 277, 314, 819 |
| TseI | GCWGC | 4 cut(s) | 4, 392, 503, 634 |
| Tsp45I | GTSAC | 3 cut(s) | 277, 314, 819 |
| TspDTI | ATGAA | 2 cut(s) | 44, 352 |
| TspGWI | ACGGA | 1 cut(s) | 769 |
| TspRI | CASTG | 2 cut(s) | 82, 688 |
| XhoI | CTCGAG | 1 cut(s) | 891 |
| XmnI | GAANNNNTTC | 1 cut(s) | 247 |
| XspI | CTAG | 3 cut(s) | 438, 447, 737 |