Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 669 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 581 |
| AciI | CCGC | 3 cut(s) | 546, 557, 1109 |
| AclWI | GGATC | 3 cut(s) | 263, 891, 1049 |
| AcoI | YGGCCR | 1 cut(s) | 303 |
| AcsI | RAATTY | 4 cut(s) | 52, 399, 599, 907 |
| AcuI | CTGAAG | 2 cut(s) | 863, 1020 |
| AcvI | CACGTG | 1 cut(s) | 746 |
| AfaI | GTAC | 3 cut(s) | 40, 822, 934 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 308, 556, 791, 1066 |
| AflII | CTTAAG | 1 cut(s) | 1048 |
| AflIII | ACRYGT | 1 cut(s) | 743 |
| AgsI | TTSAA | 8 cut(s) | 58, 83, 443, 472, 538, 599, 709, 1015 |
| AjnI | CCWGG | 2 cut(s) | 325, 608 |
| AluBI | AGCT | 8 cut(s) | 25, 187, 355, 384, 739, 1001, 1047, 1127 |
| AluI | AGCT | 8 cut(s) | 25, 187, 355, 384, 739, 1001, 1047, 1127 |
| Alw21I | GWGCWC | 1 cut(s) | 74 |
| AlwI | GGATC | 3 cut(s) | 263, 891, 1049 |
| AoxI | GGCC | 5 cut(s) | 303, 328, 547, 865, 1169 |
| ApeKI | GCWGC | 2 cut(s) | 238, 650 |
| ApoI | RAATTY | 4 cut(s) | 52, 399, 599, 907 |
| AseI | ATTAAT | 1 cut(s) | 645 |
| AspLEI | GCGC | 1 cut(s) | 12 |
| AspS9I | GGNCC | 5 cut(s) | 90, 329, 583, 1031, 1170 |
| AsuHPI | GGTGA | 4 cut(s) | 113, 571, 878, 1123 |
| AvaII | GGWCC | 3 cut(s) | 90, 583, 1031 |
| BbrPI | CACGTG | 1 cut(s) | 746 |
| BbsI | GAAGAC | 1 cut(s) | 450 |
| Bbv12I | GWGCWC | 1 cut(s) | 74 |
| BbvI | GCAGC | 2 cut(s) | 250, 637 |
| BccI | CCATC | 3 cut(s) | 21, 785, 998 |
| BciT130I | CCWGG | 2 cut(s) | 327, 610 |
| BclI | TGATCA | 2 cut(s) | 922, 1078 |
| BfoI | RGCGCY | 1 cut(s) | 13 |
| BfrI | CTTAAG | 1 cut(s) | 1048 |
| BisI | GCNGC | 3 cut(s) | 239, 547, 651 |
| BlsI | GCNGC | 3 cut(s) | 240, 548, 652 |
| Bme1390I | CCNGG | 2 cut(s) | 327, 610 |
| Bme18I | GGWCC | 3 cut(s) | 90, 583, 1031 |
| BmgT120I | GGNCC | 5 cut(s) | 90, 329, 583, 1031, 1170 |
| BmiI | GGNNCC | 4 cut(s) | 91, 148, 420, 585 |
| BmrFI | CCNGG | 2 cut(s) | 327, 610 |
| BmrI | ACTGGG | 1 cut(s) | 96 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BmuI | ACTGGG | 1 cut(s) | 96 |
| BpiI | GAAGAC | 1 cut(s) | 450 |
| BpmI | CTGGAG | 1 cut(s) | 432 |
| Bpu10I | CCTNAGC | 1 cut(s) | 385 |
| BpuEI | CTTGAG | 1 cut(s) | 271 |
| BsaAI | YACGTR | 1 cut(s) | 746 |
| BsaBI | GATNNNNATC | 1 cut(s) | 924 |
| BsaJI | CCNNGG | 4 cut(s) | 108, 306, 579, 661 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 308, 556, 791, 1066 |
| Bse118I | RCCGGY | 1 cut(s) | 301 |
| Bse1I | ACTGG | 3 cut(s) | 91, 415, 492 |
| Bse3DI | GCAATG | 2 cut(s) | 103, 1149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 924 |
| BseBI | CCWGG | 2 cut(s) | 327, 610 |
| BseDI | CCNNGG | 4 cut(s) | 108, 306, 579, 661 |
| BseJI | GATNNNNATC | 1 cut(s) | 924 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 308, 556, 791, 1066 |
| BseMI | GCAATG | 2 cut(s) | 103, 1149 |
| BseMII | CTCAG | 2 cut(s) | 399, 951 |
| BseNI | ACTGG | 3 cut(s) | 91, 415, 492 |
| BseRI | GAGGAG | 1 cut(s) | 197 |
| BseX3I | CGGCCG | 1 cut(s) | 303 |
| BseXI | GCAGC | 2 cut(s) | 250, 637 |
| Bsh1285I | CGRYCG | 1 cut(s) | 306 |
| BshFI | GGCC | 5 cut(s) | 305, 330, 549, 867, 1171 |
| BsiEI | CGRYCG | 1 cut(s) | 306 |
| BsiHKAI | GWGCWC | 1 cut(s) | 74 |
| BsiSI | CCGG | 2 cut(s) | 179, 302 |
| BslFI | GGGAC | 2 cut(s) | 489, 569 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 308, 556, 791, 1066 |
| BsmFI | GGGAC | 2 cut(s) | 489, 569 |
| BsmI | GAATGC | 1 cut(s) | 548 |
| BsnI | GGCC | 5 cut(s) | 305, 330, 549, 867, 1171 |
| Bsp1286I | GDGCHC | 1 cut(s) | 74 |
| Bsp143I | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| BspACI | CCGC | 3 cut(s) | 546, 557, 1109 |
| BspANI | GGCC | 5 cut(s) | 305, 330, 549, 867, 1171 |
| BspCNI | CTCAG | 2 cut(s) | 398, 952 |
| BspHI | TCATGA | 1 cut(s) | 1081 |
| BspLI | GGNNCC | 4 cut(s) | 91, 148, 420, 585 |
| BspPI | GGATC | 3 cut(s) | 263, 891, 1049 |
| BspTI | CTTAAG | 1 cut(s) | 1048 |
| BsrDI | GCAATG | 2 cut(s) | 103, 1149 |
| BsrFI | RCCGGY | 1 cut(s) | 301 |
| BsrI | ACTGG | 3 cut(s) | 91, 415, 492 |
| BssAI | RCCGGY | 1 cut(s) | 301 |
| BssECI | CCNNGG | 4 cut(s) | 108, 306, 579, 661 |
| BssMI | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| BssT1I | CCWWGG | 2 cut(s) | 108, 579 |
| Bst2UI | CCWGG | 2 cut(s) | 327, 610 |
| Bst4CI | ACNGT | 2 cut(s) | 427, 937 |
| Bst6I | CTCTTC | 1 cut(s) | 1109 |
| BstAFI | CTTAAG | 1 cut(s) | 1048 |
| BstBAI | YACGTR | 1 cut(s) | 746 |
| BstC8I | GCNNGC | 3 cut(s) | 299, 303, 1134 |
| BstDEI | CTNAG | 6 cut(s) | 333, 385, 551, 960, 997, 1088 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1064 |
| BstH2I | RGCGCY | 1 cut(s) | 13 |
| BstHHI | GCGC | 1 cut(s) | 12 |
| BstKTI | GATC | 5 cut(s) | 258, 886, 925, 1057, 1081 |
| BstMBI | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| BstMCI | CGRYCG | 1 cut(s) | 306 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 184, 619, 1133, 1160 |
| BstNI | CCWGG | 2 cut(s) | 327, 610 |
| BstNSI | RCATGY | 2 cut(s) | 301, 1136 |
| BstSCI | CCNGG | 2 cut(s) | 325, 608 |
| BstV1I | GCAGC | 2 cut(s) | 250, 637 |
| BstV2I | GAAGAC | 1 cut(s) | 450 |
| BstX2I | RGATCY | 2 cut(s) | 255, 1054 |
| BstYI | RGATCY | 2 cut(s) | 255, 1054 |
| BstZI | CGGCCG | 1 cut(s) | 303 |
| BsuRI | GGCC | 5 cut(s) | 305, 330, 549, 867, 1171 |
| BtgZI | GCGATG | 1 cut(s) | 298 |
| BtsIMutI | CAGTG | 1 cut(s) | 485 |
| Cac8I | GCNNGC | 3 cut(s) | 299, 303, 1134 |
| CciI | TCATGA | 1 cut(s) | 1081 |
| CfoI | GCGC | 1 cut(s) | 12 |
| Cfr10I | RCCGGY | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 5 cut(s) | 90, 329, 583, 1031, 1170 |
| Csp6I | GTAC | 3 cut(s) | 39, 821, 933 |
| CviAII | CATG | 7 cut(s) | 75, 298, 623, 781, 1082, 1133, 1174 |
| CviQI | GTAC | 3 cut(s) | 39, 821, 933 |
| DdeI | CTNAG | 6 cut(s) | 333, 385, 551, 960, 997, 1088 |
| DpnI | GATC | 5 cut(s) | 257, 885, 924, 1056, 1080 |
| DpnII | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 581 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 581 |
| EaeI | YGGCCR | 1 cut(s) | 303 |
| EagI | CGGCCG | 1 cut(s) | 303 |
| Eam1104I | CTCTTC | 1 cut(s) | 1109 |
| EarI | CTCTTC | 1 cut(s) | 1109 |
| EclXI | CGGCCG | 1 cut(s) | 303 |
| Eco130I | CCWWGG | 2 cut(s) | 108, 579 |
| Eco147I | AGGCCT | 1 cut(s) | 867 |
| Eco47I | GGWCC | 3 cut(s) | 90, 583, 1031 |
| Eco52I | CGGCCG | 1 cut(s) | 303 |
| Eco57I | CTGAAG | 2 cut(s) | 863, 1020 |
| Eco72I | CACGTG | 1 cut(s) | 746 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1064 |
| EcoRII | CCWGG | 2 cut(s) | 325, 608 |
| EcoT14I | CCWWGG | 2 cut(s) | 108, 579 |
| ErhI | CCWWGG | 2 cut(s) | 108, 579 |
| FaeI | CATG | 7 cut(s) | 78, 301, 626, 784, 1085, 1136, 1177 |
| FaqI | GGGAC | 2 cut(s) | 489, 569 |
| FatI | CATG | 7 cut(s) | 74, 297, 622, 780, 1081, 1132, 1173 |
| FauNDI | CATATG | 1 cut(s) | 449 |
| FbaI | TGATCA | 2 cut(s) | 922, 1078 |
| Fnu4HI | GCNGC | 3 cut(s) | 239, 547, 651 |
| Fsp4HI | GCNGC | 3 cut(s) | 239, 547, 651 |
| GlaI | GCGC | 1 cut(s) | 11 |
| GluI | GCNGC | 3 cut(s) | 239, 547, 651 |
| GsuI | CTGGAG | 1 cut(s) | 432 |
| HaeII | RGCGCY | 1 cut(s) | 13 |
| HaeIII | GGCC | 5 cut(s) | 305, 330, 549, 867, 1171 |
| HapII | CCGG | 2 cut(s) | 179, 302 |
| HhaI | GCGC | 1 cut(s) | 12 |
| Hin1II | CATG | 7 cut(s) | 78, 301, 626, 784, 1085, 1136, 1177 |
| Hin6I | GCGC | 1 cut(s) | 10 |
| HinP1I | GCGC | 1 cut(s) | 10 |
| HindIII | AAGCTT | 2 cut(s) | 23, 1125 |
| HinfI | GANTC | 7 cut(s) | 224, 337, 390, 507, 638, 768, 993 |
| HpaII | CCGG | 2 cut(s) | 179, 302 |
| HphI | GGTGA | 4 cut(s) | 113, 571, 878, 1123 |
| Hpy188I | TCNGA | 3 cut(s) | 233, 606, 1039 |
| Hpy188III | TCNNGA | 5 cut(s) | 387, 430, 881, 913, 1082 |
| HpyAV | CCTTC | 4 cut(s) | 228, 466, 1044, 1070 |
| HpyCH4III | ACNGT | 2 cut(s) | 427, 937 |
| HpyCH4IV | ACGT | 1 cut(s) | 745 |
| HpyCH4V | TGCA | 6 cut(s) | 276, 297, 518, 590, 981, 1154 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 184, 619, 1133, 1160 |
| HpyF3I | CTNAG | 6 cut(s) | 333, 385, 551, 960, 997, 1088 |
| HpySE526I | ACGT | 1 cut(s) | 745 |
| Hsp92II | CATG | 7 cut(s) | 78, 301, 626, 784, 1085, 1136, 1177 |
| HspAI | GCGC | 1 cut(s) | 10 |
| KroI | GCCGGC | 1 cut(s) | 301 |
| KroNI | GCCGGC | 1 cut(s) | 303 |
| Ksp22I | TGATCA | 2 cut(s) | 922, 1078 |
| Kzo9I | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| LmnI | GCTCC | 3 cut(s) | 152, 184, 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 250, 637 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeII | ACGT | 1 cut(s) | 745 |
| MalI | GATC | 5 cut(s) | 257, 885, 924, 1056, 1080 |
| MboI | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| MboII | GAAGA | 3 cut(s) | 455, 1126, 1132 |
| MflI | RGATCY | 2 cut(s) | 255, 1054 |
| MhlI | GDGCHC | 1 cut(s) | 74 |
| MluCI | AATT | 9 cut(s) | 52, 58, 399, 599, 642, 685, 756, 907, 1098 |
| MlyI | GAGTC | 3 cut(s) | 399, 632, 987 |
| MmeI | TCCRAC | 1 cut(s) | 819 |
| MnlI | CCTC | 8 cut(s) | 175, 246, 301, 329, 407, 671, 1033, 1110 |
| MroNI | GCCGGC | 1 cut(s) | 301 |
| MseI | TTAA | 6 cut(s) | 263, 645, 678, 759, 810, 1049 |
| MslI | CAYNNNNRTG | 3 cut(s) | 953, 969, 1185 |
| MspA1I | CMGCKG | 1 cut(s) | 1109 |
| MspCI | CTTAAG | 1 cut(s) | 1048 |
| MspI | CCGG | 2 cut(s) | 179, 302 |
| MspR9I | CCNGG | 2 cut(s) | 327, 610 |
| Mva1269I | GAATGC | 1 cut(s) | 548 |
| MvaI | CCWGG | 2 cut(s) | 327, 610 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 184, 619, 1133, 1160 |
| NaeI | GCCGGC | 1 cut(s) | 303 |
| NdeI | CATATG | 1 cut(s) | 449 |
| NdeII | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| NgoMIV | GCCGGC | 1 cut(s) | 301 |
| NlaIII | CATG | 7 cut(s) | 78, 301, 626, 784, 1085, 1136, 1177 |
| NlaIV | GGNNCC | 4 cut(s) | 91, 148, 420, 585 |
| NmeAIII | GCCGAG | 1 cut(s) | 331 |
| NspI | RCATGY | 2 cut(s) | 301, 1136 |
| PaeI | GCATGC | 2 cut(s) | 301, 1136 |
| PagI | TCATGA | 1 cut(s) | 1081 |
| PceI | AGGCCT | 1 cut(s) | 867 |
| PctI | GAATGC | 1 cut(s) | 548 |
| PdiI | GCCGGC | 1 cut(s) | 303 |
| PfeI | GAWTC | 4 cut(s) | 224, 337, 507, 768 |
| PkrI | GCNGC | 3 cut(s) | 240, 548, 652 |
| PleI | GAGTC | 3 cut(s) | 398, 632, 987 |
| PmaCI | CACGTG | 1 cut(s) | 746 |
| PmlI | CACGTG | 1 cut(s) | 746 |
| PpsI | GAGTC | 3 cut(s) | 398, 632, 987 |
| Ppu21I | YACGTR | 1 cut(s) | 746 |
| PshBI | ATTAAT | 1 cut(s) | 645 |
| PsiI | TTATAA | 1 cut(s) | 669 |
| Psp6I | CCWGG | 2 cut(s) | 325, 608 |
| PspCI | CACGTG | 1 cut(s) | 746 |
| PspGI | CCWGG | 2 cut(s) | 325, 608 |
| PspN4I | GGNNCC | 4 cut(s) | 91, 148, 420, 585 |
| PspPI | GGNCC | 5 cut(s) | 90, 329, 583, 1031, 1170 |
| PsuI | RGATCY | 2 cut(s) | 255, 1054 |
| RsaI | GTAC | 3 cut(s) | 40, 822, 934 |
| RsaNI | GTAC | 3 cut(s) | 39, 821, 933 |
| RseI | CAYNNNNRTG | 3 cut(s) | 953, 969, 1185 |
| SaqAI | TTAA | 6 cut(s) | 263, 645, 678, 759, 810, 1049 |
| SatI | GCNGC | 3 cut(s) | 239, 547, 651 |
| Sau3AI | GATC | 5 cut(s) | 255, 883, 922, 1054, 1078 |
| Sau96I | GGNCC | 5 cut(s) | 90, 329, 583, 1031, 1170 |
| SchI | GAGTC | 3 cut(s) | 399, 632, 987 |
| ScrFI | CCNGG | 2 cut(s) | 327, 610 |
| SduI | GDGCHC | 1 cut(s) | 74 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SinI | GGWCC | 3 cut(s) | 90, 583, 1031 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 953, 969, 1185 |
| SmlI | CTYRAG | 2 cut(s) | 250, 1048 |
| SmoI | CTYRAG | 2 cut(s) | 250, 1048 |
| SphI | GCATGC | 2 cut(s) | 301, 1136 |
| Sse9I | AATT | 9 cut(s) | 52, 58, 399, 599, 642, 685, 756, 907, 1098 |
| SseBI | AGGCCT | 1 cut(s) | 867 |
| SsiI | CCGC | 3 cut(s) | 546, 557, 1109 |
| SspI | AATATT | 1 cut(s) | 565 |
| StuI | AGGCCT | 1 cut(s) | 867 |
| StyD4I | CCNGG | 2 cut(s) | 325, 608 |
| StyI | CCWWGG | 2 cut(s) | 108, 579 |
| TaaI | ACNGT | 2 cut(s) | 427, 937 |
| TaiI | ACGT | 1 cut(s) | 748 |
| TaqI | TCGA | 2 cut(s) | 393, 766 |
| TasI | AATT | 9 cut(s) | 52, 58, 399, 599, 642, 685, 756, 907, 1098 |
| TauI | GCSGC | 1 cut(s) | 549 |
| TfiI | GAWTC | 4 cut(s) | 224, 337, 507, 768 |
| Tru1I | TTAA | 6 cut(s) | 263, 645, 678, 759, 810, 1049 |
| Tru9I | TTAA | 6 cut(s) | 263, 645, 678, 759, 810, 1049 |
| TscAI | CASTG | 1 cut(s) | 492 |
| TseI | GCWGC | 2 cut(s) | 238, 650 |
| TspDTI | ATGAA | 7 cut(s) | 20, 110, 152, 639, 760, 769, 1098 |
| TspRI | CASTG | 1 cut(s) | 492 |
| Vha464I | CTTAAG | 1 cut(s) | 1048 |
| VpaK11BI | GGWCC | 3 cut(s) | 90, 583, 1031 |
| VspI | ATTAAT | 1 cut(s) | 645 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1064 |
| XapI | RAATTY | 4 cut(s) | 52, 399, 599, 907 |
| XceI | RCATGY | 2 cut(s) | 301, 1136 |