Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 137 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 109, 174 |
| AciI | CCGC | 2 cut(s) | 26, 83 |
| AclWI | GGATC | 5 cut(s) | 2, 15, 166, 355, 422 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 109, 174, 239, 441 |
| AgsI | TTSAA | 2 cut(s) | 261, 391 |
| AjnI | CCWGG | 1 cut(s) | 434 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 314, 346 |
| AluBI | AGCT | 2 cut(s) | 74, 463 |
| AluI | AGCT | 2 cut(s) | 74, 463 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| AlwI | GGATC | 5 cut(s) | 2, 15, 166, 355, 422 |
| AoxI | GGCC | 1 cut(s) | 450 |
| ApeKI | GCWGC | 2 cut(s) | 29, 220 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 464 |
| AspLEI | GCGC | 1 cut(s) | 180 |
| AspS9I | GGNCC | 1 cut(s) | 450 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| BamHI | GGATCC | 1 cut(s) | 7 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 72, 104 |
| BbvI | GCAGC | 2 cut(s) | 16, 207 |
| BccI | CCATC | 3 cut(s) | 209, 233, 415 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 199, 233 |
| BciT130I | CCWGG | 1 cut(s) | 436 |
| BciVI | GTATCC | 1 cut(s) | 237 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| BfuAI | ACCTGC | 1 cut(s) | 137 |
| BfuI | GTATCC | 1 cut(s) | 237 |
| BisI | GCNGC | 4 cut(s) | 27, 30, 84, 221 |
| BlpI | GCTNAGC | 1 cut(s) | 70 |
| BlsI | GCNGC | 4 cut(s) | 28, 31, 85, 222 |
| Bme1390I | CCNGG | 1 cut(s) | 436 |
| BmgT120I | GGNCC | 1 cut(s) | 450 |
| BmiI | GGNNCC | 1 cut(s) | 9 |
| BmrFI | CCNGG | 1 cut(s) | 436 |
| BmsI | GCATC | 1 cut(s) | 153 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 70 |
| Bsa29I | ATCGAT | 1 cut(s) | 161 |
| BsaI | GGTCTC | 1 cut(s) | 200 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 109, 174, 239, 441 |
| BseBI | CCWGG | 1 cut(s) | 436 |
| BseCI | ATCGAT | 1 cut(s) | 161 |
| BseGI | GGATG | 2 cut(s) | 406, 426 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 109, 174, 239, 441 |
| BseXI | GCAGC | 2 cut(s) | 16, 207 |
| BseYI | CCCAGC | 1 cut(s) | 74 |
| BshFI | GGCC | 1 cut(s) | 452 |
| BshVI | ATCGAT | 1 cut(s) | 161 |
| BslFI | GGGAC | 2 cut(s) | 129, 316 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 109, 174, 239, 441 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| BsmFI | GGGAC | 2 cut(s) | 129, 316 |
| BsnI | GGCC | 1 cut(s) | 452 |
| Bso31I | GGTCTC | 1 cut(s) | 200 |
| Bsp143I | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 70 |
| BspACI | CCGC | 2 cut(s) | 26, 83 |
| BspANI | GGCC | 1 cut(s) | 452 |
| BspDI | ATCGAT | 1 cut(s) | 161 |
| BspLI | GGNNCC | 1 cut(s) | 9 |
| BspMI | ACCTGC | 1 cut(s) | 137 |
| BspPI | GGATC | 5 cut(s) | 2, 15, 166, 355, 422 |
| BspTNI | GGTCTC | 1 cut(s) | 200 |
| BssMI | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| Bst2UI | CCWGG | 1 cut(s) | 436 |
| Bst4CI | ACNGT | 1 cut(s) | 120 |
| Bst6I | CTCTTC | 2 cut(s) | 273, 479 |
| BstDEI | CTNAG | 2 cut(s) | 70, 226 |
| BstF5I | GGATG | 2 cut(s) | 406, 426 |
| BstHHI | GCGC | 1 cut(s) | 180 |
| BstKTI | GATC | 7 cut(s) | 10, 15, 64, 161, 345, 350, 417 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 80 |
| BstNI | CCWGG | 1 cut(s) | 436 |
| BstSCI | CCNGG | 1 cut(s) | 434 |
| BstV1I | GCAGC | 2 cut(s) | 16, 207 |
| BstX2I | RGATCY | 2 cut(s) | 7, 347 |
| BstYI | RGATCY | 2 cut(s) | 7, 347 |
| Bsu15I | ATCGAT | 1 cut(s) | 161 |
| BsuI | GTATCC | 1 cut(s) | 237 |
| BsuRI | GGCC | 1 cut(s) | 452 |
| BsuTUI | ATCGAT | 1 cut(s) | 161 |
| BtsCI | GGATG | 2 cut(s) | 406, 426 |
| BveI | ACCTGC | 1 cut(s) | 137 |
| CfoI | GCGC | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 1 cut(s) | 450 |
| ClaI | ATCGAT | 1 cut(s) | 161 |
| CviAII | CATG | 4 cut(s) | 56, 109, 181, 340 |
| DdeI | CTNAG | 2 cut(s) | 70, 226 |
| DpnI | GATC | 7 cut(s) | 9, 14, 63, 160, 344, 349, 416 |
| DpnII | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| Eam1104I | CTCTTC | 2 cut(s) | 273, 479 |
| EarI | CTCTTC | 2 cut(s) | 273, 479 |
| Eco31I | GGTCTC | 1 cut(s) | 200 |
| EcoO109I | RGGNCCY | 1 cut(s) | 450 |
| EcoRII | CCWGG | 1 cut(s) | 434 |
| FaeI | CATG | 4 cut(s) | 59, 112, 184, 343 |
| FaiI | YATR | 8 cut(s) | 57, 110, 173, 175, 182, 218, 237, 341 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 371, 403, 452, 484 |
| FaqI | GGGAC | 2 cut(s) | 129, 316 |
| FatI | CATG | 4 cut(s) | 55, 108, 180, 339 |
| FauNDI | CATATG | 1 cut(s) | 173 |
| Fnu4HI | GCNGC | 4 cut(s) | 27, 30, 84, 221 |
| FokI | GGATG | 2 cut(s) | 413, 433 |
| Fsp4HI | GCNGC | 4 cut(s) | 27, 30, 84, 221 |
| GlaI | GCGC | 1 cut(s) | 179 |
| GluI | GCNGC | 4 cut(s) | 27, 30, 84, 221 |
| GsaI | CCCAGC | 1 cut(s) | 78 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 1 cut(s) | 452 |
| HhaI | GCGC | 1 cut(s) | 180 |
| Hin1II | CATG | 4 cut(s) | 59, 112, 184, 343 |
| Hin6I | GCGC | 1 cut(s) | 178 |
| HinP1I | GCGC | 1 cut(s) | 178 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HinfI | GANTC | 2 cut(s) | 95, 257 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 132, 206, 321, 347, 459 |
| Hpy188III | TCNNGA | 2 cut(s) | 278, 418 |
| Hpy99I | CGWCG | 1 cut(s) | 50 |
| HpyAV | CCTTC | 2 cut(s) | 178, 435 |
| HpyCH4III | ACNGT | 1 cut(s) | 120 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 2 cut(s) | 70, 226 |
| Hsp92II | CATG | 4 cut(s) | 59, 112, 184, 343 |
| HspAI | GCGC | 1 cut(s) | 178 |
| Kzo9I | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| LpnPI | CCDG | 9 cut(s) | 31, 60, 77, 128, 132, 263, 403, 421, 448 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 207 |
| LweI | GCATC | 1 cut(s) | 153 |
| MaeIII | GTNAC | 1 cut(s) | 87 |
| MalI | GATC | 7 cut(s) | 9, 14, 63, 160, 344, 349, 416 |
| MboI | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| MboII | GAAGA | 2 cut(s) | 260, 466 |
| MflI | RGATCY | 2 cut(s) | 7, 347 |
| MlyI | GAGTC | 1 cut(s) | 89 |
| MnlI | CCTC | 6 cut(s) | 276, 293, 318, 363, 397, 405 |
| MroXI | GAANNNNTTC | 1 cut(s) | 464 |
| MspR9I | CCNGG | 1 cut(s) | 436 |
| MvaI | CCWGG | 1 cut(s) | 436 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 80 |
| NdeI | CATATG | 1 cut(s) | 173 |
| NdeII | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| NlaIII | CATG | 4 cut(s) | 59, 112, 184, 343 |
| NlaIV | GGNNCC | 1 cut(s) | 9 |
| NmeAIII | GCCGAG | 1 cut(s) | 45 |
| PdmI | GAANNNNTTC | 1 cut(s) | 464 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 109, 174 |
| PkrI | GCNGC | 4 cut(s) | 28, 31, 85, 222 |
| PleI | GAGTC | 1 cut(s) | 89 |
| PpsI | GAGTC | 1 cut(s) | 89 |
| Psp6I | CCWGG | 1 cut(s) | 434 |
| PspFI | CCCAGC | 1 cut(s) | 74 |
| PspGI | CCWGG | 1 cut(s) | 434 |
| PspN4I | GGNNCC | 1 cut(s) | 9 |
| PspPI | GGNCC | 1 cut(s) | 450 |
| PsuI | RGATCY | 2 cut(s) | 7, 347 |
| SatI | GCNGC | 4 cut(s) | 27, 30, 84, 221 |
| Sau3AI | GATC | 7 cut(s) | 7, 12, 61, 158, 342, 347, 414 |
| Sau96I | GGNCC | 1 cut(s) | 450 |
| SchI | GAGTC | 1 cut(s) | 89 |
| ScrFI | CCNGG | 1 cut(s) | 436 |
| SetI | ASST | 6 cut(s) | 76, 151, 250, 384, 446, 465 |
| SfaNI | GCATC | 1 cut(s) | 153 |
| SsiI | CCGC | 2 cut(s) | 26, 83 |
| StyD4I | CCNGG | 1 cut(s) | 434 |
| TaaI | ACNGT | 1 cut(s) | 120 |
| TaqI | TCGA | 3 cut(s) | 161, 298, 480 |
| TauI | GCSGC | 2 cut(s) | 29, 86 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| TseI | GCWGC | 2 cut(s) | 29, 220 |
| TspDTI | ATGAA | 3 cut(s) | 142, 197, 260 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 109, 174 |
| XmnI | GAANNNNTTC | 1 cut(s) | 464 |