Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 113 |
| AccB1I | GGYRCC | 1 cut(s) | 113 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 129 |
| AciI | CCGC | 3 cut(s) | 44, 225, 362 |
| AclWI | GGATC | 1 cut(s) | 76 |
| AfaI | GTAC | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AgeI | ACCGGT | 1 cut(s) | 99 |
| AgsI | TTSAA | 3 cut(s) | 158, 304, 370 |
| AluBI | AGCT | 1 cut(s) | 267 |
| AluI | AGCT | 1 cut(s) | 267 |
| Alw21I | GWGCWC | 1 cut(s) | 21 |
| AlwI | GGATC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 2 cut(s) | 88, 264 |
| AsiGI | ACCGGT | 1 cut(s) | 99 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 280 |
| Asp718I | GGTACC | 1 cut(s) | 113 |
| AspS9I | GGNCC | 1 cut(s) | 227 |
| AsuNHI | GCTAGC | 1 cut(s) | 29 |
| AvaII | GGWCC | 1 cut(s) | 227 |
| BanI | GGYRCC | 1 cut(s) | 113 |
| BanII | GRGCYC | 1 cut(s) | 351 |
| BauI | CACGAG | 1 cut(s) | 54 |
| Bbv12I | GWGCWC | 1 cut(s) | 21 |
| BbvI | GCAGC | 2 cut(s) | 75, 276 |
| BccI | CCATC | 3 cut(s) | 125, 266, 337 |
| BclI | TGATCA | 1 cut(s) | 409 |
| BfaI | CTAG | 2 cut(s) | 30, 41 |
| BfmI | CTRYAG | 2 cut(s) | 89, 238 |
| BglII | AGATCT | 1 cut(s) | 213 |
| BisI | GCNGC | 3 cut(s) | 89, 265, 363 |
| BlsI | GCNGC | 3 cut(s) | 90, 266, 364 |
| Bme18I | GGWCC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 227 |
| BmiI | GGNNCC | 2 cut(s) | 115, 350 |
| BmtI | GCTAGC | 1 cut(s) | 33 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 8, 40 |
| BsaJI | CCNNGG | 1 cut(s) | 230 |
| BsaWI | WCCGGW | 2 cut(s) | 99, 402 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bse118I | RCCGGY | 1 cut(s) | 99 |
| Bse1I | ACTGG | 1 cut(s) | 84 |
| BseDI | CCNNGG | 1 cut(s) | 230 |
| BseGI | GGATG | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseNI | ACTGG | 1 cut(s) | 84 |
| BseXI | GCAGC | 2 cut(s) | 75, 276 |
| BsgI | GTGCAG | 1 cut(s) | 36 |
| BshNI | GGYRCC | 1 cut(s) | 113 |
| BshTI | ACCGGT | 1 cut(s) | 99 |
| BsiHKAI | GWGCWC | 1 cut(s) | 21 |
| BsiSI | CCGG | 2 cut(s) | 100, 403 |
| BslFI | GGGAC | 2 cut(s) | 90, 348 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmFI | GGGAC | 2 cut(s) | 90, 348 |
| Bsp1286I | GDGCHC | 2 cut(s) | 21, 351 |
| Bsp143I | GATC | 3 cut(s) | 68, 213, 409 |
| BspACI | CCGC | 3 cut(s) | 44, 225, 362 |
| BspLI | GGNNCC | 2 cut(s) | 115, 350 |
| BspMAI | CTGCAG | 1 cut(s) | 93 |
| BspOI | GCTAGC | 1 cut(s) | 33 |
| BspPI | GGATC | 1 cut(s) | 76 |
| BspQI | GCTCTTC | 1 cut(s) | 9 |
| BspT107I | GGYRCC | 1 cut(s) | 113 |
| BsrFI | RCCGGY | 1 cut(s) | 99 |
| BsrI | ACTGG | 1 cut(s) | 84 |
| BssAI | RCCGGY | 1 cut(s) | 99 |
| BssECI | CCNNGG | 1 cut(s) | 230 |
| BssMI | GATC | 3 cut(s) | 68, 213, 409 |
| BssSI | CACGAG | 1 cut(s) | 54 |
| BssT1I | CCWWGG | 1 cut(s) | 230 |
| Bst2BI | CACGAG | 1 cut(s) | 54 |
| Bst6I | CTCTTC | 1 cut(s) | 9 |
| BstC8I | GCNNGC | 2 cut(s) | 31, 93 |
| BstF5I | GGATG | 1 cut(s) | 205 |
| BstKTI | GATC | 3 cut(s) | 71, 216, 412 |
| BstMBI | GATC | 3 cut(s) | 68, 213, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 50 |
| BstSFI | CTRYAG | 2 cut(s) | 89, 238 |
| BstV1I | GCAGC | 2 cut(s) | 75, 276 |
| BstX2I | RGATCY | 1 cut(s) | 213 |
| BstYI | RGATCY | 1 cut(s) | 213 |
| BtsCI | GGATG | 1 cut(s) | 205 |
| Cac8I | GCNNGC | 2 cut(s) | 31, 93 |
| Cfr10I | RCCGGY | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 227 |
| Csp6I | GTAC | 1 cut(s) | 114 |
| CspAI | ACCGGT | 1 cut(s) | 99 |
| CviAII | CATG | 4 cut(s) | 163, 186, 221, 250 |
| CviJI | RGCY | 7 cut(s) | 5, 29, 33, 267, 290, 349, 365 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 29, 33, 267, 290, 349, 365 |
| CviQI | GTAC | 1 cut(s) | 114 |
| DpnI | GATC | 3 cut(s) | 70, 215, 411 |
| DpnII | GATC | 3 cut(s) | 68, 213, 409 |
| Eam1104I | CTCTTC | 1 cut(s) | 9 |
| EarI | CTCTTC | 1 cut(s) | 9 |
| EciI | GGCGGA | 1 cut(s) | 240 |
| Eco130I | CCWWGG | 1 cut(s) | 230 |
| Eco24I | GRGCYC | 1 cut(s) | 351 |
| Eco47I | GGWCC | 1 cut(s) | 227 |
| EcoT14I | CCWWGG | 1 cut(s) | 230 |
| EcoT38I | GRGCYC | 1 cut(s) | 351 |
| ErhI | CCWWGG | 1 cut(s) | 230 |
| FaeI | CATG | 4 cut(s) | 166, 189, 224, 253 |
| FaiI | YATR | 7 cut(s) | 164, 177, 187, 222, 240, 251, 270 |
| FaqI | GGGAC | 2 cut(s) | 90, 348 |
| FatI | CATG | 4 cut(s) | 162, 185, 220, 249 |
| FbaI | TGATCA | 1 cut(s) | 409 |
| Fnu4HI | GCNGC | 3 cut(s) | 89, 265, 363 |
| FokI | GGATG | 1 cut(s) | 212 |
| FriOI | GRGCYC | 1 cut(s) | 351 |
| Fsp4HI | GCNGC | 3 cut(s) | 89, 265, 363 |
| FspBI | CTAG | 2 cut(s) | 30, 41 |
| GluI | GCNGC | 3 cut(s) | 89, 265, 363 |
| HapII | CCGG | 2 cut(s) | 100, 403 |
| Hin1II | CATG | 4 cut(s) | 166, 189, 224, 253 |
| HinfI | GANTC | 4 cut(s) | 47, 304, 370, 385 |
| HpaII | CCGG | 2 cut(s) | 100, 403 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 342, 353 |
| Hpy188III | TCNNGA | 2 cut(s) | 144, 158 |
| HpyAV | CCTTC | 1 cut(s) | 44 |
| HpyCH4IV | ACGT | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 3 cut(s) | 53, 91, 220 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 50 |
| HpySE526I | ACGT | 1 cut(s) | 205 |
| Hsp92II | CATG | 4 cut(s) | 166, 189, 224, 253 |
| KpnI | GGTACC | 1 cut(s) | 117 |
| Ksp22I | TGATCA | 1 cut(s) | 409 |
| Kzo9I | GATC | 3 cut(s) | 68, 213, 409 |
| LguI | GCTCTTC | 1 cut(s) | 9 |
| LmnI | GCTCC | 1 cut(s) | 354 |
| LpnPI | CCDG | 7 cut(s) | 65, 77, 95, 113, 129, 374, 416 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 276 |
| MaeI | CTAG | 2 cut(s) | 30, 41 |
| MaeII | ACGT | 1 cut(s) | 205 |
| MalI | GATC | 3 cut(s) | 70, 215, 411 |
| MboI | GATC | 3 cut(s) | 68, 213, 409 |
| MboII | GAAGA | 1 cut(s) | 26 |
| MflI | RGATCY | 1 cut(s) | 213 |
| MhlI | GDGCHC | 2 cut(s) | 21, 351 |
| MluCI | AATT | 3 cut(s) | 153, 276, 414 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MnlI | CCTC | 3 cut(s) | 48, 67, 190 |
| MroXI | GAANNNNTTC | 1 cut(s) | 280 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| MspI | CCGG | 2 cut(s) | 100, 403 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 50 |
| NdeII | GATC | 3 cut(s) | 68, 213, 409 |
| NheI | GCTAGC | 1 cut(s) | 29 |
| NlaIII | CATG | 4 cut(s) | 166, 189, 224, 253 |
| NlaIV | GGNNCC | 2 cut(s) | 115, 350 |
| NmeAIII | GCCGAG | 1 cut(s) | 5 |
| PciSI | GCTCTTC | 1 cut(s) | 9 |
| PdmI | GAANNNNTTC | 1 cut(s) | 280 |
| PfeI | GAWTC | 3 cut(s) | 47, 304, 370 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 129 |
| PinAI | ACCGGT | 1 cut(s) | 99 |
| PkrI | GCNGC | 3 cut(s) | 90, 266, 364 |
| PleI | GAGTC | 1 cut(s) | 379 |
| PpsI | GAGTC | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 2 cut(s) | 115, 350 |
| PspPI | GGNCC | 1 cut(s) | 227 |
| PstI | CTGCAG | 1 cut(s) | 93 |
| PsuI | RGATCY | 1 cut(s) | 213 |
| RsaI | GTAC | 1 cut(s) | 115 |
| RsaNI | GTAC | 1 cut(s) | 114 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SapI | GCTCTTC | 1 cut(s) | 9 |
| SatI | GCNGC | 3 cut(s) | 89, 265, 363 |
| Sau3AI | GATC | 3 cut(s) | 68, 213, 409 |
| Sau96I | GGNCC | 1 cut(s) | 227 |
| SchI | GAGTC | 1 cut(s) | 379 |
| SduI | GDGCHC | 2 cut(s) | 21, 351 |
| SetI | ASST | 3 cut(s) | 208, 232, 269 |
| SfcI | CTRYAG | 2 cut(s) | 89, 238 |
| SinI | GGWCC | 1 cut(s) | 227 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| Sse9I | AATT | 3 cut(s) | 153, 276, 414 |
| SsiI | CCGC | 3 cut(s) | 44, 225, 362 |
| SspMI | CTAG | 2 cut(s) | 30, 41 |
| StyI | CCWWGG | 1 cut(s) | 230 |
| TaiI | ACGT | 1 cut(s) | 208 |
| TasI | AATT | 3 cut(s) | 153, 276, 414 |
| TauI | GCSGC | 1 cut(s) | 365 |
| TfiI | GAWTC | 3 cut(s) | 47, 304, 370 |
| TseI | GCWGC | 2 cut(s) | 88, 264 |
| TspDTI | ATGAA | 1 cut(s) | 216 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 129 |
| VpaK11BI | GGWCC | 1 cut(s) | 227 |
| XmnI | GAANNNNTTC | 1 cut(s) | 280 |
| XspI | CTAG | 2 cut(s) | 30, 41 |