Rmu_sc0009609.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009609.1
OG0000049
Physical Location & Seq
Reverse (-)
3437 .. 4813
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009609.1_g000001.1.cds

Sequence Viewer

Length: 1377 bp
atggcagaagtcatgaatgggattcacacgtcgcaaatccgtttggatttgacgttggttacgttgggagatgcgggggtcgctacattccaggatggattttggtacatggctggccatttgctggccctgaaagcaaagttgtcggggttcaaaggcaccattgcctccatttggcgcatcagatcgggacttacgatccaagatgtaggggaggactttgtattccagtttgatagtgaagcagttcgcaatcgtattctgcatgggggaccctggttctatcgcaataccatgctggtggtcggagagtatgatgatctctgtccggtggaggaggtgccgctgaatatgctggaggcttgggtggctgtgaagggcctcccttttggtctgagaaatatgaaggcgctcgagttggtggggccgtcgttgggaacaatcgttaggattgatttgaatgctgtgaagaggaaggacgaggagcagcgcataaaatttgtgtttgaagttcggcactgcattcgcacatggaaggtgatcgaattctctcctgtagtaaagccggagctctcttttatctatgagaaggtcaagggcttctgtcgtgactgtggcttgttcatccacgatgccctaggctatgataggctgctggtcaaggagaaggaggagattcaggctattcctccagcgtcggccatggctgggttgtctattaccttggggacaacatcgaaacttactcgggttttggagattgggagctggagtcagaaaaccaaatctaatctggttctattggagaaagatgcagacttggatggtgccacagttcagccaacaaaagctgggagggtaggtccagcggcgttgccttctcttggatctatgggctccaaaatgatgggacctcccattgtattggataaaggcttcgctgagatcaaagttgggggttgtgtgcagcttcctgtgcctccgggtgagattaataaggcagccctgacattgcttccagtttctgcagtgtcccaggatacggcatgccatgtgaagttttcttccatgcaaatggtgtcagcagcgaggaaaagaaaggcagtcactaagttggatccacttgggaaaaaatacttggcttttcctgagtcgaaatttgaggtcgatgacaatgtatcgttgattctgcagcataagcatggtcgtatgttggtttcaccgaagaagaaaaaggcagggcgccccaaggggagcaagaatagagtgaaatccactaatgaacatgatgaaaaaactatccgtaagtataaacgtcaggggaaagctttgagttttgattctaaccttgaagctattgacaaggttggtaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

458

Amino Acids

50.5

Weight (kDa)

9.46

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 158, 340, 827, 1242
AccB7I CCANNNNNTGG 1 cut(s) 124
AciI CCGC 3 cut(s) 74, 344, 869
AclWI GGATC 4 cut(s) 193, 895, 1112, 1125
AcoI YGGCCR 2 cut(s) 115, 699
AcsI RAATTY 3 cut(s) 497, 545, 1157
AcyI GRCGYC 1 cut(s) 1243
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 6 cut(s) 124, 174, 434, 708, 884, 1042
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 4 cut(s) 154, 460, 509, 1352
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 3 cut(s) 90, 275, 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
AluBI AGCT 6 cut(s) 571, 768, 851, 970, 1328, 1355
AluI AGCT 6 cut(s) 571, 768, 851, 970, 1328, 1355
Alw21I GWGCWC 1 cut(s) 573
AlwI GGATC 4 cut(s) 193, 895, 1112, 1125
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 2 cut(s) 413, 747
AoxI GGCC 5 cut(s) 115, 126, 379, 425, 699
ApeKI GCWGC 6 cut(s) 487, 652, 967, 1001, 1085, 1192
ApoI RAATTY 3 cut(s) 497, 545, 1157
AseI ATTAAT 1 cut(s) 993
Asp700I GAANNNNTTC 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 637
AspLEI GCGC 4 cut(s) 180, 412, 492, 1245
AspS9I GGNCC 6 cut(s) 127, 272, 379, 425, 863, 911
AsuC2I CCSGG 1 cut(s) 984
AsuHPI GGTGA 3 cut(s) 550, 998, 1212
AvaI CYCGRG 2 cut(s) 413, 747
AvaII GGWCC 3 cut(s) 272, 863, 911
AvrII CCTAGG 1 cut(s) 637
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 1117
BanI GGYRCC 4 cut(s) 158, 340, 827, 1242
BanII GRGCYC 2 cut(s) 573, 899
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 6 cut(s) 499, 639, 979, 1013, 1097, 1204
BccI CCATC 3 cut(s) 89, 818, 901
BceAI ACGGC 2 cut(s) 412, 1059
BcgI CGANNNNNNTGC 4 cut(s) 126, 160, 506, 540
BciT130I CCWGG 3 cut(s) 92, 277, 1037
BciVI GTATCC 1 cut(s) 1033
BcnI CCSGG 1 cut(s) 984
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 3 cut(s) 555, 1026, 1190
BfoI RGCGCY 2 cut(s) 413, 1246
BfuI GTATCC 1 cut(s) 1033
BisI GCNGC 8 cut(s) 344, 488, 653, 870, 968, 1002, 1086, 1193
BlnI CCTAGG 1 cut(s) 637
BlsI GCNGC 8 cut(s) 345, 489, 654, 871, 969, 1003, 1087, 1194
Bme1390I CCNGG 4 cut(s) 92, 277, 984, 1037
Bme18I GGWCC 3 cut(s) 272, 863, 911
BmeT110I CYCGRG 2 cut(s) 413, 747
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 6 cut(s) 127, 272, 379, 425, 863, 911
BmrFI CCNGG 4 cut(s) 92, 277, 984, 1037
BmsI GCATC 4 cut(s) 61, 189, 622, 802
BpmI CTGGAG 3 cut(s) 377, 675, 790
BpuMI CCSGG 1 cut(s) 984
BsaHI GRCGYC 1 cut(s) 1243
BsaJI CCNNGG 6 cut(s) 275, 637, 702, 723, 1035, 1248
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 4 cut(s) 757, 787, 847, 877
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 174, 434, 708, 884, 1042
Bse1I ACTGG 2 cut(s) 229, 1019
Bse3DI GCAATG 2 cut(s) 162, 1010
BseBI CCWGG 3 cut(s) 92, 277, 1037
BseDI CCNNGG 6 cut(s) 275, 637, 702, 723, 1035, 1248
BseGI GGATG 3 cut(s) 100, 624, 829
BseLI CCNNNNNNNGG 6 cut(s) 124, 174, 434, 708, 884, 1042
BseMI GCAATG 2 cut(s) 162, 1010
BseMII CTCAG 3 cut(s) 386, 933, 1140
BseNI ACTGG 2 cut(s) 229, 1019
BseRI GAGGAG 3 cut(s) 350, 497, 686
BseXI GCAGC 6 cut(s) 499, 639, 979, 1013, 1097, 1204
BseYI CCCAGC 2 cut(s) 707, 851
BsgI GTGCAG 1 cut(s) 986
BshFI GGCC 5 cut(s) 117, 128, 381, 427, 701
BshNI GGYRCC 4 cut(s) 158, 340, 827, 1242
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 2 cut(s) 413, 747
BsiSI CCGG 3 cut(s) 329, 566, 983
BslFI GGGAC 5 cut(s) 204, 285, 742, 924, 1018
BslI CCNNNNNNNGG 6 cut(s) 124, 174, 434, 708, 884, 1042
BsmFI GGGAC 5 cut(s) 204, 285, 742, 924, 1018
BsmI GAATGC 2 cut(s) 466, 522
BsnI GGCC 5 cut(s) 117, 128, 381, 427, 701
BsoBI CYCGRG 2 cut(s) 413, 747
Bsp1286I GDGCHC 2 cut(s) 573, 899
Bsp143I GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 3 cut(s) 74, 344, 869
BspANI GGCC 5 cut(s) 117, 128, 381, 427, 701
BspCNI CTCAG 3 cut(s) 387, 934, 1141
BspHI TCATGA 1 cut(s) 12
BspMAI CTGCAG 2 cut(s) 1030, 1194
BspPI GGATC 4 cut(s) 193, 895, 1112, 1125
BspT107I GGYRCC 4 cut(s) 158, 340, 827, 1242
BsrDI GCAATG 2 cut(s) 162, 1010
BsrI ACTGG 2 cut(s) 229, 1019
BssECI CCNNGG 6 cut(s) 275, 637, 702, 723, 1035, 1248
BssMI GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
BssNI GRCGYC 1 cut(s) 1243
BssT1I CCWWGG 4 cut(s) 637, 702, 723, 1248
Bst2UI CCWGG 3 cut(s) 92, 277, 1037
Bst4CI ACNGT 2 cut(s) 614, 835
Bst6I CTCTTC 1 cut(s) 464
BstACI GRCGYC 1 cut(s) 1243
BstC8I GCNNGC 3 cut(s) 115, 126, 1048
BstDEI CTNAG 4 cut(s) 395, 942, 1110, 1149
BstDSI CCRYGG 1 cut(s) 702
BstF5I GGATG 3 cut(s) 100, 624, 829
BstH2I RGCGCY 2 cut(s) 413, 1246
BstHHI GCGC 4 cut(s) 180, 412, 492, 1245
BstKTI GATC 7 cut(s) 188, 201, 322, 543, 890, 948, 1120
BstMBI GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
BstMWI GCNNNNNNNGC 6 cut(s) 80, 134, 352, 368, 976, 1198
BstNI CCWGG 3 cut(s) 92, 277, 1037
BstNSI RCATGY 1 cut(s) 1050
BstSCI CCNGG 4 cut(s) 90, 275, 982, 1035
BstSFI CTRYAG 3 cut(s) 555, 1026, 1190
BstV1I GCAGC 6 cut(s) 499, 639, 979, 1013, 1097, 1204
BstX2I RGATCY 2 cut(s) 887, 1117
BstXI CCANNNNNNTGG 4 cut(s) 301, 907, 925, 1075
BstYI RGATCY 2 cut(s) 887, 1117
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 5 cut(s) 117, 128, 381, 427, 701
BtgI CCRYGG 1 cut(s) 702
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 3 cut(s) 100, 624, 829
BtsI GCAGTG 2 cut(s) 517, 1035
BtsIMutI CAGTG 2 cut(s) 517, 1035
Cac8I GCNNGC 3 cut(s) 115, 126, 1048
CaiI CAGNNNCTG 1 cut(s) 1025
CciI TCATGA 1 cut(s) 12
CfoI GCGC 4 cut(s) 180, 412, 492, 1245
Cfr13I GGNCC 6 cut(s) 127, 272, 379, 425, 863, 911
CseI GACGC 1 cut(s) 684
Csp6I GTAC 1 cut(s) 106
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 4 cut(s) 395, 942, 1110, 1149
DinI GGCGCC 1 cut(s) 1244
DpnI GATC 7 cut(s) 187, 200, 321, 542, 889, 947, 1119
DpnII GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
EaeI YGGCCR 2 cut(s) 115, 699
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 4 cut(s) 637, 702, 723, 1248
Eco24I GRGCYC 2 cut(s) 573, 899
Eco47I GGWCC 3 cut(s) 272, 863, 911
Eco53kI GAGCTC 1 cut(s) 571
Eco88I CYCGRG 2 cut(s) 413, 747
EcoICRI GAGCTC 1 cut(s) 571
EcoO109I RGGNCCY 3 cut(s) 272, 379, 911
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 3 cut(s) 90, 275, 1035
EcoT14I CCWWGG 4 cut(s) 637, 702, 723, 1248
EcoT38I GRGCYC 2 cut(s) 573, 899
EgeI GGCGCC 1 cut(s) 1244
EheI GGCGCC 1 cut(s) 1244
ErhI CCWWGG 4 cut(s) 637, 702, 723, 1248
FaqI GGGAC 5 cut(s) 204, 285, 742, 924, 1018
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 8 cut(s) 344, 488, 653, 870, 968, 1002, 1086, 1193
FokI GGATG 3 cut(s) 107, 611, 836
FriOI GRGCYC 2 cut(s) 573, 899
Fsp4HI GCNGC 8 cut(s) 344, 488, 653, 870, 968, 1002, 1086, 1193
FspBI CTAG 1 cut(s) 638
GlaI GCGC 4 cut(s) 179, 411, 491, 1244
GluI GCNGC 8 cut(s) 344, 488, 653, 870, 968, 1002, 1086, 1193
GsaI CCCAGC 2 cut(s) 711, 855
GsuI CTGGAG 3 cut(s) 377, 675, 790
HaeII RGCGCY 2 cut(s) 413, 1246
HaeIII GGCC 5 cut(s) 117, 128, 381, 427, 701
HapII CCGG 3 cut(s) 329, 566, 983
HgaI GACGC 1 cut(s) 684
HhaI GCGC 4 cut(s) 180, 412, 492, 1245
Hin1I GRCGYC 1 cut(s) 1243
Hin6I GCGC 4 cut(s) 178, 410, 490, 1243
HinP1I GCGC 4 cut(s) 178, 410, 490, 1243
HindIII AAGCTT 1 cut(s) 1326
HinfI GANTC 6 cut(s) 22, 676, 772, 1151, 1186, 1340
HpaII CCGG 3 cut(s) 329, 566, 983
HphI GGTGA 3 cut(s) 550, 998, 1212
Hpy188I TCNGA 4 cut(s) 185, 308, 396, 777
Hpy188III TCNNGA 4 cut(s) 13, 189, 608, 1148
Hpy99I CGWCG 3 cut(s) 34, 433, 700
HpyAV CCTTC 7 cut(s) 370, 400, 469, 529, 583, 661, 888
HpyCH4III ACNGT 2 cut(s) 614, 835
HpyCH4IV ACGT 4 cut(s) 29, 53, 62, 1315
HpyCH4V TGCA 7 cut(s) 265, 522, 815, 967, 1028, 1072, 1192
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 134, 352, 368, 976, 1198
HpyF3I CTNAG 4 cut(s) 395, 942, 1110, 1149
HpySE526I ACGT 4 cut(s) 29, 53, 62, 1315
Hsp92I GRCGYC 1 cut(s) 1243
HspAI GCGC 4 cut(s) 178, 410, 490, 1243
KasI GGCGCC 1 cut(s) 1242
KflI GGGWCCC 1 cut(s) 272
Kzo9I GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
LmnI GCTCC 5 cut(s) 484, 568, 765, 902, 1254
Lsp1109I GCAGC 6 cut(s) 499, 639, 979, 1013, 1097, 1204
LweI GCATC 4 cut(s) 61, 189, 622, 802
MaeI CTAG 1 cut(s) 638
MaeII ACGT 4 cut(s) 29, 53, 62, 1315
MaeIII GTNAC 3 cut(s) 58, 608, 1105
MalI GATC 7 cut(s) 187, 200, 321, 542, 889, 947, 1119
MboI GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
MboII GAAGA 4 cut(s) 481, 1056, 1237, 1240
MflI RGATCY 2 cut(s) 887, 1117
MhlI GDGCHC 2 cut(s) 573, 899
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 497, 545, 1157
MluNI TGGCCA 1 cut(s) 117
Mly113I GGCGCC 1 cut(s) 1243
MlyI GAGTC 2 cut(s) 781, 1160
MmeI TCCRAC 2 cut(s) 286, 1095
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 246
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 993
MslI CAYNNNNRTG 3 cut(s) 299, 1073, 1200
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 346, 869
MspI CCGG 3 cut(s) 329, 566, 983
MspR9I CCNGG 4 cut(s) 92, 277, 984, 1037
Mva1269I GAATGC 2 cut(s) 466, 522
MvaI CCWGG 3 cut(s) 92, 277, 1037
MwoI GCNNNNNNNGC 6 cut(s) 80, 134, 352, 368, 976, 1198
NarI GGCGCC 1 cut(s) 1243
NciI CCSGG 1 cut(s) 984
NcoI CCATGG 1 cut(s) 702
NdeII GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
NmuCI GTSAC 2 cut(s) 608, 1105
NspI RCATGY 1 cut(s) 1050
PaeI GCATGC 1 cut(s) 1050
PaeR7I CTCGAG 1 cut(s) 413
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 194
PctI GAATGC 2 cut(s) 466, 522
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 4 cut(s) 22, 676, 1186, 1340
PflMI CCANNNNNTGG 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 8 cut(s) 345, 489, 654, 871, 969, 1003, 1087, 1194
PleI GAGTC 2 cut(s) 780, 1159
PluTI GGCGCC 1 cut(s) 1246
PpsI GAGTC 2 cut(s) 780, 1159
PpuMI RGGWCCY 2 cut(s) 272, 911
PshBI ATTAAT 1 cut(s) 993
Psp124BI GAGCTC 1 cut(s) 573
Psp5II RGGWCCY 2 cut(s) 272, 911
Psp6I CCWGG 3 cut(s) 90, 275, 1035
PspFI CCCAGC 2 cut(s) 707, 851
PspGI CCWGG 3 cut(s) 90, 275, 1035
PspPI GGNCC 6 cut(s) 127, 272, 379, 425, 863, 911
PspPPI RGGWCCY 2 cut(s) 272, 911
PspXI VCTCGAGB 1 cut(s) 413
PstI CTGCAG 2 cut(s) 1030, 1194
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 2 cut(s) 887, 1117
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 3 cut(s) 299, 1073, 1200
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 993
SatI GCNGC 8 cut(s) 344, 488, 653, 870, 968, 1002, 1086, 1193
Sau3AI GATC 7 cut(s) 185, 198, 319, 540, 887, 945, 1117
Sau96I GGNCC 6 cut(s) 127, 272, 379, 425, 863, 911
SchI GAGTC 2 cut(s) 781, 1160
ScrFI CCNGG 4 cut(s) 92, 277, 984, 1037
SduI GDGCHC 2 cut(s) 573, 899
SfaNI GCATC 4 cut(s) 61, 189, 622, 802
SfcI CTRYAG 3 cut(s) 555, 1026, 1190
SfoI GGCGCC 1 cut(s) 1244
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 3 cut(s) 272, 863, 911
SlaI CTCGAG 1 cut(s) 413
SmiMI CAYNNNNRTG 3 cut(s) 299, 1073, 1200
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SphI GCATGC 1 cut(s) 1050
Sse9I AATT 3 cut(s) 497, 545, 1157
SsiI CCGC 3 cut(s) 74, 344, 869
SspDI GGCGCC 1 cut(s) 1242
SspMI CTAG 1 cut(s) 638
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 90, 275, 982, 1035
StyI CCWWGG 4 cut(s) 637, 702, 723, 1248
TaaI ACNGT 2 cut(s) 614, 835
TaiI ACGT 4 cut(s) 32, 56, 65, 1318
TaqI TCGA 5 cut(s) 414, 543, 737, 1154, 1167
TasI AATT 3 cut(s) 497, 545, 1157
TauI GCSGC 2 cut(s) 346, 872
TfiI GAWTC 4 cut(s) 22, 676, 1186, 1340
Tru1I TTAA 1 cut(s) 993
Tru9I TTAA 1 cut(s) 993
TscAI CASTG 2 cut(s) 524, 1035
TseFI GTSAC 2 cut(s) 608, 1105
TseI GCWGC 6 cut(s) 487, 652, 967, 1001, 1085, 1192
Tsp45I GTSAC 2 cut(s) 608, 1105
TspDTI ATGAA 5 cut(s) 29, 419, 613, 1296, 1305
TspGWI ACGGA 2 cut(s) 29, 1292
TspRI CASTG 2 cut(s) 524, 1035
Van91I CCANNNNNTGG 1 cut(s) 124
VpaK11BI GGWCC 3 cut(s) 272, 863, 911
VspI ATTAAT 1 cut(s) 993
XapI RAATTY 3 cut(s) 497, 545, 1157
XceI RCATGY 1 cut(s) 1050
XcmI CCANNNNNNNNNTGG 1 cut(s) 790
XhoI CTCGAG 1 cut(s) 413
XmaJI CCTAGG 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.