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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 37, 83, 326, 353, 395 |
| AclWI | GGATC | 2 cut(s) | 43, 174 |
| AcvI | CACGTG | 1 cut(s) | 344 |
| AdeI | CACNNNGTG | 1 cut(s) | 344 |
| AfaI | GTAC | 2 cut(s) | 113, 263 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 29, 315, 380, 452 |
| AflIII | ACRYGT | 1 cut(s) | 9 |
| AluBI | AGCT | 1 cut(s) | 257 |
| AluI | AGCT | 1 cut(s) | 257 |
| Alw26I | GTCTC | 1 cut(s) | 419 |
| AlwI | GGATC | 2 cut(s) | 43, 174 |
| Ama87I | CYCGRG | 1 cut(s) | 445 |
| ApeKI | GCWGC | 1 cut(s) | 320 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 7, 39 |
| AspA2I | CCTAGG | 1 cut(s) | 374 |
| AspLEI | GCGC | 1 cut(s) | 325 |
| AspS9I | GGNCC | 1 cut(s) | 221 |
| AsuC2I | CCSGG | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 1 cut(s) | 363 |
| AvaI | CYCGRG | 1 cut(s) | 445 |
| AvaII | GGWCC | 1 cut(s) | 221 |
| AvrII | CCTAGG | 1 cut(s) | 374 |
| BbrPI | CACGTG | 1 cut(s) | 344 |
| BbvI | GCAGC | 1 cut(s) | 332 |
| BccI | CCATC | 1 cut(s) | 281 |
| BcnI | CCSGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 1 cut(s) | 419 |
| BfaI | CTAG | 4 cut(s) | 108, 375, 429, 462 |
| BfoI | RGCGCY | 1 cut(s) | 326 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 34 |
| BisI | GCNGC | 5 cut(s) | 38, 84, 321, 326, 396 |
| BlnI | CCTAGG | 1 cut(s) | 374 |
| BlsI | GCNGC | 5 cut(s) | 39, 85, 322, 327, 397 |
| Bme1390I | CCNGG | 1 cut(s) | 30 |
| Bme18I | GGWCC | 1 cut(s) | 221 |
| BmeT110I | CYCGRG | 1 cut(s) | 445 |
| BmgT120I | GGNCC | 1 cut(s) | 221 |
| BmiI | GGNNCC | 1 cut(s) | 222 |
| BmrFI | CCNGG | 1 cut(s) | 30 |
| BmsI | GCATC | 2 cut(s) | 70, 234 |
| BpuMI | CCSGG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 169 |
| BsaAI | YACGTR | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 5 cut(s) | 29, 97, 224, 374, 446 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 25, 55 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 29, 315, 380, 452 |
| Bse118I | RCCGGY | 1 cut(s) | 266 |
| BseCI | ATCGAT | 1 cut(s) | 169 |
| BseDI | CCNNGG | 5 cut(s) | 29, 97, 224, 374, 446 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 29, 315, 380, 452 |
| BseMII | CTCAG | 1 cut(s) | 405 |
| BseXI | GCAGC | 1 cut(s) | 332 |
| Bsh1285I | CGRYCG | 1 cut(s) | 75 |
| BshVI | ATCGAT | 1 cut(s) | 169 |
| BsiEI | CGRYCG | 1 cut(s) | 75 |
| BsiHKCI | CYCGRG | 1 cut(s) | 445 |
| BsiSI | CCGG | 2 cut(s) | 29, 267 |
| BsiWI | CGTACG | 1 cut(s) | 261 |
| BslFI | GGGAC | 2 cut(s) | 82, 234 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 29, 315, 380, 452 |
| BsmAI | GTCTC | 1 cut(s) | 419 |
| BsmFI | GGGAC | 2 cut(s) | 82, 234 |
| BsoBI | CYCGRG | 1 cut(s) | 445 |
| Bsp143I | GATC | 3 cut(s) | 48, 87, 166 |
| Bsp19I | CCATGG | 1 cut(s) | 224 |
| BspACI | CCGC | 5 cut(s) | 37, 83, 326, 353, 395 |
| BspCNI | CTCAG | 1 cut(s) | 406 |
| BspDI | ATCGAT | 1 cut(s) | 169 |
| BspLI | GGNNCC | 1 cut(s) | 222 |
| BspPI | GGATC | 2 cut(s) | 43, 174 |
| BsrFI | RCCGGY | 1 cut(s) | 266 |
| BssAI | RCCGGY | 1 cut(s) | 266 |
| BssECI | CCNNGG | 5 cut(s) | 29, 97, 224, 374, 446 |
| BssMI | GATC | 3 cut(s) | 48, 87, 166 |
| BssT1I | CCWWGG | 2 cut(s) | 224, 374 |
| Bst4CI | ACNGT | 3 cut(s) | 76, 98, 116 |
| BstBAI | YACGTR | 1 cut(s) | 344 |
| BstC8I | GCNNGC | 1 cut(s) | 268 |
| BstDEI | CTNAG | 1 cut(s) | 414 |
| BstDSI | CCRYGG | 2 cut(s) | 97, 224 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 378 |
| BstH2I | RGCGCY | 1 cut(s) | 326 |
| BstHHI | GCGC | 1 cut(s) | 325 |
| BstKTI | GATC | 3 cut(s) | 51, 90, 169 |
| BstMAI | GTCTC | 1 cut(s) | 419 |
| BstMBI | GATC | 3 cut(s) | 48, 87, 166 |
| BstMCI | CGRYCG | 1 cut(s) | 75 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 34, 263 |
| BstSCI | CCNGG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 1 cut(s) | 332 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| Bsu15I | ATCGAT | 1 cut(s) | 169 |
| BsuTUI | ATCGAT | 1 cut(s) | 169 |
| BtgI | CCRYGG | 2 cut(s) | 97, 224 |
| Cac8I | GCNNGC | 1 cut(s) | 268 |
| CfoI | GCGC | 1 cut(s) | 325 |
| Cfr10I | RCCGGY | 1 cut(s) | 266 |
| Cfr13I | GGNCC | 1 cut(s) | 221 |
| ClaI | ATCGAT | 1 cut(s) | 169 |
| CseI | GACGC | 1 cut(s) | 13 |
| Csp6I | GTAC | 2 cut(s) | 112, 262 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 46, 79, 81, 114 |
| CviAII | CATG | 2 cut(s) | 62, 225 |
| CviJI | RGCY | 5 cut(s) | 145, 257, 301, 384, 413 |
| CviKI_1 | RGCY | 5 cut(s) | 145, 257, 301, 384, 413 |
| CviQI | GTAC | 2 cut(s) | 112, 262 |
| DdeI | CTNAG | 1 cut(s) | 414 |
| DpnI | GATC | 3 cut(s) | 50, 89, 168 |
| DpnII | GATC | 3 cut(s) | 48, 87, 166 |
| DraIII | CACNNNGTG | 1 cut(s) | 344 |
| Eco130I | CCWWGG | 2 cut(s) | 224, 374 |
| Eco47I | GGWCC | 1 cut(s) | 221 |
| Eco72I | CACGTG | 1 cut(s) | 344 |
| Eco88I | CYCGRG | 1 cut(s) | 445 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 378 |
| EcoT14I | CCWWGG | 2 cut(s) | 224, 374 |
| ErhI | CCWWGG | 2 cut(s) | 224, 374 |
| FaeI | CATG | 2 cut(s) | 65, 228 |
| FaiI | YATR | 7 cut(s) | 63, 128, 216, 226, 272, 294, 350 |
| FaqI | GGGAC | 2 cut(s) | 82, 234 |
| FatI | CATG | 2 cut(s) | 61, 224 |
| FauI | CCCGC | 1 cut(s) | 346 |
| Fnu4HI | GCNGC | 5 cut(s) | 38, 84, 321, 326, 396 |
| Fsp4HI | GCNGC | 5 cut(s) | 38, 84, 321, 326, 396 |
| FspBI | CTAG | 4 cut(s) | 108, 375, 429, 462 |
| GlaI | GCGC | 1 cut(s) | 324 |
| GluI | GCNGC | 5 cut(s) | 38, 84, 321, 326, 396 |
| HaeII | RGCGCY | 1 cut(s) | 326 |
| HapII | CCGG | 2 cut(s) | 29, 267 |
| HgaI | GACGC | 1 cut(s) | 13 |
| HhaI | GCGC | 1 cut(s) | 325 |
| Hin1II | CATG | 2 cut(s) | 65, 228 |
| Hin6I | GCGC | 1 cut(s) | 323 |
| HinP1I | GCGC | 1 cut(s) | 323 |
| HincII | GTYRAC | 1 cut(s) | 15 |
| HindII | GTYRAC | 1 cut(s) | 15 |
| HinfI | GANTC | 1 cut(s) | 209 |
| HpaII | CCGG | 2 cut(s) | 29, 267 |
| HphI | GGTGA | 1 cut(s) | 363 |
| Hpy166II | GTNNAC | 1 cut(s) | 15 |
| Hpy8I | GTNNAC | 1 cut(s) | 15 |
| HpyAV | CCTTC | 1 cut(s) | 135 |
| HpyCH4III | ACNGT | 3 cut(s) | 76, 98, 116 |
| HpyCH4IV | ACGT | 2 cut(s) | 11, 343 |
| HpyCH4V | TGCA | 1 cut(s) | 45 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 34, 263 |
| HpyF3I | CTNAG | 1 cut(s) | 414 |
| HpySE526I | ACGT | 2 cut(s) | 11, 343 |
| Hsp92II | CATG | 2 cut(s) | 65, 228 |
| HspAI | GCGC | 1 cut(s) | 323 |
| KroI | GCCGGC | 1 cut(s) | 266 |
| KroNI | GCCGGC | 1 cut(s) | 268 |
| Kzo9I | GATC | 3 cut(s) | 48, 87, 166 |
| LpnPI | CCDG | 2 cut(s) | 42, 280 |
| Lsp1109I | GCAGC | 1 cut(s) | 332 |
| LweI | GCATC | 2 cut(s) | 70, 234 |
| MaeI | CTAG | 4 cut(s) | 108, 375, 429, 462 |
| MaeII | ACGT | 2 cut(s) | 11, 343 |
| MalI | GATC | 3 cut(s) | 50, 89, 168 |
| MboI | GATC | 3 cut(s) | 48, 87, 166 |
| MboII | GAAGA | 2 cut(s) | 296, 450 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MnlI | CCTC | 5 cut(s) | 27, 124, 309, 343, 441 |
| MroNI | GCCGGC | 1 cut(s) | 266 |
| MseI | TTAA | 2 cut(s) | 440, 478 |
| MspI | CCGG | 2 cut(s) | 29, 267 |
| MspR9I | CCNGG | 1 cut(s) | 30 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 34, 263 |
| NaeI | GCCGGC | 1 cut(s) | 268 |
| NciI | CCSGG | 1 cut(s) | 30 |
| NcoI | CCATGG | 1 cut(s) | 224 |
| NdeII | GATC | 3 cut(s) | 48, 87, 166 |
| NgoMIV | GCCGGC | 1 cut(s) | 266 |
| NlaIII | CATG | 2 cut(s) | 65, 228 |
| NlaIV | GGNNCC | 1 cut(s) | 222 |
| PdiI | GCCGGC | 1 cut(s) | 268 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| Pfl23II | CGTACG | 1 cut(s) | 261 |
| PkrI | GCNGC | 5 cut(s) | 39, 85, 322, 327, 397 |
| PmaCI | CACGTG | 1 cut(s) | 344 |
| PmlI | CACGTG | 1 cut(s) | 344 |
| Ppu21I | YACGTR | 1 cut(s) | 344 |
| PspCI | CACGTG | 1 cut(s) | 344 |
| PspLI | CGTACG | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 1 cut(s) | 222 |
| PspPI | GGNCC | 1 cut(s) | 221 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| RsaI | GTAC | 2 cut(s) | 113, 263 |
| RsaNI | GTAC | 2 cut(s) | 112, 262 |
| SaqAI | TTAA | 2 cut(s) | 440, 478 |
| SatI | GCNGC | 5 cut(s) | 38, 84, 321, 326, 396 |
| Sau3AI | GATC | 3 cut(s) | 48, 87, 166 |
| Sau96I | GGNCC | 1 cut(s) | 221 |
| ScrFI | CCNGG | 1 cut(s) | 30 |
| SetI | ASST | 6 cut(s) | 14, 20, 113, 259, 346, 376 |
| SfaNI | GCATC | 2 cut(s) | 70, 234 |
| SinI | GGWCC | 1 cut(s) | 221 |
| SsiI | CCGC | 5 cut(s) | 37, 83, 326, 353, 395 |
| SspMI | CTAG | 4 cut(s) | 108, 375, 429, 462 |
| StyD4I | CCNGG | 1 cut(s) | 28 |
| StyI | CCWWGG | 2 cut(s) | 224, 374 |
| TaaI | ACNGT | 3 cut(s) | 76, 98, 116 |
| TaiI | ACGT | 2 cut(s) | 14, 346 |
| TaqI | TCGA | 4 cut(s) | 154, 169, 235, 275 |
| TauI | GCSGC | 4 cut(s) | 40, 86, 328, 398 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| Tru1I | TTAA | 2 cut(s) | 440, 478 |
| Tru9I | TTAA | 2 cut(s) | 440, 478 |
| TseI | GCWGC | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 221 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 378 |
| XmaJI | CCTAGG | 1 cut(s) | 374 |
| XspI | CTAG | 4 cut(s) | 108, 375, 429, 462 |