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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 562 |
| AciI | CCGC | 1 cut(s) | 5 |
| AclWI | GGATC | 1 cut(s) | 485 |
| AcuI | CTGAAG | 2 cut(s) | 425, 639 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 104, 287, 351, 374 |
| AgsI | TTSAA | 4 cut(s) | 112, 149, 244, 569 |
| AjiI | CACGTC | 1 cut(s) | 649 |
| AjnI | CCWGG | 3 cut(s) | 319, 367, 433 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 431, 463 |
| AluBI | AGCT | 6 cut(s) | 26, 38, 65, 191, 233, 416 |
| AluI | AGCT | 6 cut(s) | 26, 38, 65, 191, 233, 416 |
| Alw21I | GWGCWC | 1 cut(s) | 61 |
| Alw26I | GTCTC | 3 cut(s) | 396, 534, 713 |
| AlwI | GGATC | 1 cut(s) | 485 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 734 |
| Ama87I | CYCGRG | 1 cut(s) | 60 |
| AoxI | GGCC | 1 cut(s) | 410 |
| ApeKI | GCWGC | 5 cut(s) | 23, 158, 191, 230, 277 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 494 |
| AspA2I | CCTAGG | 2 cut(s) | 98, 119 |
| AsuHPI | GGTGA | 2 cut(s) | 586, 706 |
| AvaI | CYCGRG | 1 cut(s) | 60 |
| AvrII | CCTAGG | 2 cut(s) | 98, 119 |
| Bbv12I | GWGCWC | 1 cut(s) | 61 |
| BbvI | GCAGC | 5 cut(s) | 35, 145, 178, 242, 289 |
| BccI | CCATC | 1 cut(s) | 628 |
| BciT130I | CCWGG | 3 cut(s) | 321, 369, 435 |
| BcoDI | GTCTC | 3 cut(s) | 396, 534, 713 |
| BfaI | CTAG | 2 cut(s) | 99, 120 |
| BfmI | CTRYAG | 2 cut(s) | 159, 540 |
| BfuAI | ACCTGC | 1 cut(s) | 562 |
| BisI | GCNGC | 5 cut(s) | 24, 159, 192, 231, 278 |
| BlnI | CCTAGG | 2 cut(s) | 98, 119 |
| BlsI | GCNGC | 5 cut(s) | 25, 160, 193, 232, 279 |
| Bme1390I | CCNGG | 3 cut(s) | 321, 369, 435 |
| BmeT110I | CYCGRG | 1 cut(s) | 60 |
| BmgBI | CACGTC | 1 cut(s) | 649 |
| BmiI | GGNNCC | 1 cut(s) | 552 |
| BmrFI | CCNGG | 3 cut(s) | 321, 369, 435 |
| BmsI | GCATC | 2 cut(s) | 350, 688 |
| BpmI | CTGGAG | 1 cut(s) | 93 |
| Bpu10I | CCTNAGC | 1 cut(s) | 282 |
| BpuEI | CTTGAG | 1 cut(s) | 530 |
| BsaJI | CCNNGG | 3 cut(s) | 98, 119, 434 |
| BsaWI | WCCGGW | 1 cut(s) | 682 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 301, 331 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 104, 287, 351, 374 |
| Bse3DI | GCAATG | 2 cut(s) | 452, 591 |
| BseBI | CCWGG | 3 cut(s) | 321, 369, 435 |
| BseDI | CCNNGG | 3 cut(s) | 98, 119, 434 |
| BseGI | GGATG | 3 cut(s) | 341, 520, 679 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 104, 287, 351, 374 |
| BseMI | GCAATG | 2 cut(s) | 452, 591 |
| BseMII | CTCAG | 2 cut(s) | 408, 699 |
| BseRI | GAGGAG | 2 cut(s) | 653, 704 |
| BseXI | GCAGC | 5 cut(s) | 35, 145, 178, 242, 289 |
| BseYI | CCCAGC | 2 cut(s) | 473, 623 |
| BsgI | GTGCAG | 1 cut(s) | 444 |
| BshFI | GGCC | 1 cut(s) | 412 |
| BsiHKAI | GWGCWC | 1 cut(s) | 61 |
| BsiHKCI | CYCGRG | 1 cut(s) | 60 |
| BsiSI | CCGG | 1 cut(s) | 683 |
| BslFI | GGGAC | 1 cut(s) | 368 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 104, 287, 351, 374 |
| BsmAI | GTCTC | 3 cut(s) | 396, 534, 713 |
| BsmFI | GGGAC | 1 cut(s) | 368 |
| BsmI | GAATGC | 2 cut(s) | 194, 625 |
| BsnI | GGCC | 1 cut(s) | 412 |
| BsoBI | CYCGRG | 1 cut(s) | 60 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 2 cut(s) | 420, 477 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspANI | GGCC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 2 cut(s) | 409, 700 |
| BspLI | GGNNCC | 1 cut(s) | 552 |
| BspMAI | CTGCAG | 1 cut(s) | 163 |
| BspMI | ACCTGC | 1 cut(s) | 562 |
| BspPI | GGATC | 1 cut(s) | 485 |
| BsrDI | GCAATG | 2 cut(s) | 452, 591 |
| BssECI | CCNNGG | 3 cut(s) | 98, 119, 434 |
| BssMI | GATC | 2 cut(s) | 420, 477 |
| BssT1I | CCWWGG | 2 cut(s) | 98, 119 |
| Bst2UI | CCWGG | 3 cut(s) | 321, 369, 435 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| Bst6I | CTCTTC | 2 cut(s) | 401, 564 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 3 cut(s) | 235, 414, 459 |
| BstDEI | CTNAG | 3 cut(s) | 282, 417, 708 |
| BstF5I | GGATG | 3 cut(s) | 341, 520, 679 |
| BstKTI | GATC | 2 cut(s) | 423, 480 |
| BstMAI | GTCTC | 3 cut(s) | 396, 534, 713 |
| BstMBI | GATC | 2 cut(s) | 420, 477 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 283, 458 |
| BstNI | CCWGG | 3 cut(s) | 321, 369, 435 |
| BstSCI | CCNGG | 3 cut(s) | 319, 367, 433 |
| BstSFI | CTRYAG | 2 cut(s) | 159, 540 |
| BstV1I | GCAGC | 5 cut(s) | 35, 145, 178, 242, 289 |
| BsuRI | GGCC | 1 cut(s) | 412 |
| BtrI | CACGTC | 1 cut(s) | 649 |
| BtsCI | GGATG | 3 cut(s) | 341, 520, 679 |
| BveI | ACCTGC | 1 cut(s) | 562 |
| Cac8I | GCNNGC | 3 cut(s) | 235, 414, 459 |
| CaiI | CAGNNNCTG | 1 cut(s) | 734 |
| CviAII | CATG | 2 cut(s) | 287, 533 |
| DdeI | CTNAG | 3 cut(s) | 282, 417, 708 |
| DpnI | GATC | 2 cut(s) | 422, 479 |
| DpnII | GATC | 2 cut(s) | 420, 477 |
| Eam1104I | CTCTTC | 2 cut(s) | 401, 564 |
| EarI | CTCTTC | 2 cut(s) | 401, 564 |
| Eco130I | CCWWGG | 2 cut(s) | 98, 119 |
| Eco57I | CTGAAG | 2 cut(s) | 425, 639 |
| Eco88I | CYCGRG | 1 cut(s) | 60 |
| EcoRII | CCWGG | 3 cut(s) | 319, 367, 433 |
| EcoT14I | CCWWGG | 2 cut(s) | 98, 119 |
| ErhI | CCWWGG | 2 cut(s) | 98, 119 |
| FaeI | CATG | 2 cut(s) | 290, 536 |
| FaiI | YATR | 6 cut(s) | 177, 204, 275, 288, 425, 534 |
| FaqI | GGGAC | 1 cut(s) | 368 |
| FatI | CATG | 2 cut(s) | 286, 532 |
| Fnu4HI | GCNGC | 5 cut(s) | 24, 159, 192, 231, 278 |
| FokI | GGATG | 3 cut(s) | 328, 527, 666 |
| Fsp4HI | GCNGC | 5 cut(s) | 24, 159, 192, 231, 278 |
| FspBI | CTAG | 2 cut(s) | 99, 120 |
| GluI | GCNGC | 5 cut(s) | 24, 159, 192, 231, 278 |
| GsaI | CCCAGC | 2 cut(s) | 477, 627 |
| GsuI | CTGGAG | 1 cut(s) | 93 |
| HaeIII | GGCC | 1 cut(s) | 412 |
| HapII | CCGG | 1 cut(s) | 683 |
| Hin1II | CATG | 2 cut(s) | 290, 536 |
| HinfI | GANTC | 2 cut(s) | 389, 593 |
| HpaII | CCGG | 1 cut(s) | 683 |
| HphI | GGTGA | 2 cut(s) | 586, 706 |
| Hpy188I | TCNGA | 1 cut(s) | 598 |
| Hpy188III | TCNNGA | 2 cut(s) | 72, 293 |
| HpyAV | CCTTC | 2 cut(s) | 480, 604 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4IV | ACGT | 2 cut(s) | 430, 648 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 161, 194, 277, 461, 584, 679 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 283, 458 |
| HpyF3I | CTNAG | 3 cut(s) | 282, 417, 708 |
| HpySE526I | ACGT | 2 cut(s) | 430, 648 |
| Hsp92II | CATG | 2 cut(s) | 290, 536 |
| Kzo9I | GATC | 2 cut(s) | 420, 477 |
| LmnI | GCTCC | 2 cut(s) | 35, 640 |
| Lsp1109I | GCAGC | 5 cut(s) | 35, 145, 178, 242, 289 |
| LweI | GCATC | 2 cut(s) | 350, 688 |
| MaeI | CTAG | 2 cut(s) | 99, 120 |
| MaeII | ACGT | 2 cut(s) | 430, 648 |
| MaeIII | GTNAC | 2 cut(s) | 307, 600 |
| MalI | GATC | 2 cut(s) | 422, 479 |
| MboI | GATC | 2 cut(s) | 420, 477 |
| MboII | GAAGA | 6 cut(s) | 120, 256, 259, 418, 451, 581 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 1 cut(s) | 261 |
| MlyI | GAGTC | 1 cut(s) | 398 |
| MroXI | GAANNNNTTC | 1 cut(s) | 494 |
| MseI | TTAA | 2 cut(s) | 213, 396 |
| MspA1I | CMGCKG | 3 cut(s) | 26, 233, 416 |
| MspI | CCGG | 1 cut(s) | 683 |
| MspR9I | CCNGG | 3 cut(s) | 321, 369, 435 |
| Mva1269I | GAATGC | 2 cut(s) | 194, 625 |
| MvaI | CCWGG | 3 cut(s) | 321, 369, 435 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 283, 458 |
| NdeII | GATC | 2 cut(s) | 420, 477 |
| NlaIII | CATG | 2 cut(s) | 290, 536 |
| NlaIV | GGNNCC | 1 cut(s) | 552 |
| PaeR7I | CTCGAG | 1 cut(s) | 60 |
| PctI | GAATGC | 2 cut(s) | 194, 625 |
| PdmI | GAANNNNTTC | 1 cut(s) | 494 |
| PfeI | GAWTC | 1 cut(s) | 593 |
| PkrI | GCNGC | 5 cut(s) | 25, 160, 193, 232, 279 |
| PleI | GAGTC | 1 cut(s) | 397 |
| PpsI | GAGTC | 1 cut(s) | 397 |
| Psp6I | CCWGG | 3 cut(s) | 319, 367, 433 |
| PspFI | CCCAGC | 2 cut(s) | 473, 623 |
| PspGI | CCWGG | 3 cut(s) | 319, 367, 433 |
| PspN4I | GGNNCC | 1 cut(s) | 552 |
| PspXI | VCTCGAGB | 1 cut(s) | 60 |
| PstI | CTGCAG | 1 cut(s) | 163 |
| PstNI | CAGNNNCTG | 1 cut(s) | 734 |
| PvuII | CAGCTG | 3 cut(s) | 26, 233, 416 |
| SaqAI | TTAA | 2 cut(s) | 213, 396 |
| SatI | GCNGC | 5 cut(s) | 24, 159, 192, 231, 278 |
| Sau3AI | GATC | 2 cut(s) | 420, 477 |
| SchI | GAGTC | 1 cut(s) | 398 |
| ScrFI | CCNGG | 3 cut(s) | 321, 369, 435 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SfaNI | GCATC | 2 cut(s) | 350, 688 |
| SfcI | CTRYAG | 2 cut(s) | 159, 540 |
| Sfr274I | CTCGAG | 1 cut(s) | 60 |
| SlaI | CTCGAG | 1 cut(s) | 60 |
| SmlI | CTYRAG | 2 cut(s) | 60, 509 |
| SmoI | CTYRAG | 2 cut(s) | 60, 509 |
| Sse9I | AATT | 1 cut(s) | 261 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspI | AATATT | 1 cut(s) | 494 |
| SspMI | CTAG | 2 cut(s) | 99, 120 |
| StyD4I | CCNGG | 3 cut(s) | 319, 367, 433 |
| StyI | CCWWGG | 2 cut(s) | 98, 119 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaiI | ACGT | 2 cut(s) | 433, 651 |
| TaqI | TCGA | 1 cut(s) | 61 |
| TasI | AATT | 1 cut(s) | 261 |
| TfiI | GAWTC | 1 cut(s) | 593 |
| Tru1I | TTAA | 2 cut(s) | 213, 396 |
| Tru9I | TTAA | 2 cut(s) | 213, 396 |
| TseI | GCWGC | 5 cut(s) | 23, 158, 191, 230, 277 |
| TspDTI | ATGAA | 2 cut(s) | 129, 651 |
| XhoI | CTCGAG | 1 cut(s) | 60 |
| XmaJI | CCTAGG | 2 cut(s) | 98, 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 494 |
| XspI | CTAG | 2 cut(s) | 99, 120 |