Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 1 cut(s) | 194 |
| AciI | CCGC | 2 cut(s) | 77, 365 |
| AclWI | GGATC | 5 cut(s) | 40, 79, 187, 481, 494 |
| AcsI | RAATTY | 1 cut(s) | 539 |
| AfaI | GTAC | 3 cut(s) | 101, 505, 523 |
| AflIII | ACRYGT | 1 cut(s) | 17 |
| AgsI | TTSAA | 4 cut(s) | 423, 539, 557, 620 |
| AjiI | CACGTC | 1 cut(s) | 357 |
| AjnI | CCWGG | 2 cut(s) | 63, 489 |
| AluBI | AGCT | 3 cut(s) | 131, 239, 292 |
| AluI | AGCT | 3 cut(s) | 131, 239, 292 |
| Alw21I | GWGCWC | 1 cut(s) | 256 |
| Alw26I | GTCTC | 1 cut(s) | 347 |
| AlwI | GGATC | 5 cut(s) | 40, 79, 187, 481, 494 |
| Ama87I | CYCGRG | 1 cut(s) | 560 |
| AoxI | GGCC | 2 cut(s) | 61, 330 |
| ApoI | RAATTY | 1 cut(s) | 539 |
| AspS9I | GGNCC | 2 cut(s) | 122, 320 |
| AsuHPI | GGTGA | 3 cut(s) | 218, 379, 505 |
| AvaI | CYCGRG | 1 cut(s) | 560 |
| AvaII | GGWCC | 2 cut(s) | 122, 320 |
| BamHI | GGATCC | 1 cut(s) | 486 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 99, 131 |
| BauI | CACGAG | 1 cut(s) | 48 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| Bbv12I | GWGCWC | 1 cut(s) | 256 |
| BccI | CCATC | 3 cut(s) | 305, 319, 635 |
| BceAI | ACGGC | 2 cut(s) | 317, 471 |
| BciT130I | CCWGG | 2 cut(s) | 65, 491 |
| BclI | TGATCA | 2 cut(s) | 208, 448 |
| BcoDI | GTCTC | 1 cut(s) | 347 |
| BfaI | CTAG | 1 cut(s) | 650 |
| BfmI | CTRYAG | 1 cut(s) | 277 |
| BfuAI | ACCTGC | 1 cut(s) | 194 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 491 |
| Bme18I | GGWCC | 2 cut(s) | 122, 320 |
| BmeT110I | CYCGRG | 1 cut(s) | 560 |
| BmgBI | CACGTC | 1 cut(s) | 357 |
| BmgT120I | GGNCC | 2 cut(s) | 122, 320 |
| BmiI | GGNNCC | 1 cut(s) | 488 |
| BmrFI | CCNGG | 2 cut(s) | 65, 491 |
| BmsI | GCATC | 1 cut(s) | 190 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| BpmI | CTGGAG | 1 cut(s) | 371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 1 cut(s) | 259 |
| Bse118I | RCCGGY | 1 cut(s) | 379 |
| Bse1I | ACTGG | 2 cut(s) | 101, 223 |
| Bse8I | GATNNNNATC | 1 cut(s) | 246 |
| BseBI | CCWGG | 2 cut(s) | 65, 491 |
| BseDI | CCNNGG | 1 cut(s) | 259 |
| BseGI | GGATG | 2 cut(s) | 534, 567 |
| BseJI | GATNNNNATC | 1 cut(s) | 246 |
| BseNI | ACTGG | 2 cut(s) | 101, 223 |
| BseRI | GAGGAG | 1 cut(s) | 491 |
| BshFI | GGCC | 2 cut(s) | 63, 332 |
| BsiHKAI | GWGCWC | 1 cut(s) | 256 |
| BsiHKCI | CYCGRG | 1 cut(s) | 560 |
| BsiSI | CCGG | 2 cut(s) | 380, 514 |
| BsmAI | GTCTC | 1 cut(s) | 347 |
| BsmBI | CGTCTC | 1 cut(s) | 347 |
| BsnI | GGCC | 2 cut(s) | 63, 332 |
| BsoBI | CYCGRG | 1 cut(s) | 560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 256 |
| Bsp143I | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| Bsp19I | CCATGG | 1 cut(s) | 259 |
| BspACI | CCGC | 2 cut(s) | 77, 365 |
| BspANI | GGCC | 2 cut(s) | 63, 332 |
| BspLI | GGNNCC | 1 cut(s) | 488 |
| BspMI | ACCTGC | 1 cut(s) | 194 |
| BspPI | GGATC | 5 cut(s) | 40, 79, 187, 481, 494 |
| BsrFI | RCCGGY | 1 cut(s) | 379 |
| BsrI | ACTGG | 2 cut(s) | 101, 223 |
| BssAI | RCCGGY | 1 cut(s) | 379 |
| BssECI | CCNNGG | 1 cut(s) | 259 |
| BssMI | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| BssSI | CACGAG | 1 cut(s) | 48 |
| BssT1I | CCWWGG | 1 cut(s) | 259 |
| Bst2BI | CACGAG | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 491 |
| Bst4CI | ACNGT | 3 cut(s) | 270, 342, 553 |
| Bst6I | CTCTTC | 3 cut(s) | 166, 468, 550 |
| BstC8I | GCNNGC | 2 cut(s) | 133, 389 |
| BstDSI | CCRYGG | 1 cut(s) | 259 |
| BstF5I | GGATG | 2 cut(s) | 534, 567 |
| BstKTI | GATC | 7 cut(s) | 35, 74, 195, 211, 451, 489, 567 |
| BstMAI | GTCTC | 1 cut(s) | 347 |
| BstMBI | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstNI | CCWGG | 2 cut(s) | 65, 491 |
| BstNSI | RCATGY | 2 cut(s) | 21, 391 |
| BstSCI | CCNGG | 2 cut(s) | 63, 489 |
| BstSFI | CTRYAG | 1 cut(s) | 277 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BstX2I | RGATCY | 2 cut(s) | 32, 486 |
| BstYI | RGATCY | 2 cut(s) | 32, 486 |
| BsuRI | GGCC | 2 cut(s) | 63, 332 |
| BtgI | CCRYGG | 1 cut(s) | 259 |
| BtrI | CACGTC | 1 cut(s) | 357 |
| BtsCI | GGATG | 2 cut(s) | 534, 567 |
| BtsI | GCAGTG | 1 cut(s) | 80 |
| BtsIMutI | CAGTG | 3 cut(s) | 80, 94, 338 |
| BveI | ACCTGC | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 2 cut(s) | 133, 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 379 |
| Cfr13I | GGNCC | 2 cut(s) | 122, 320 |
| Csp6I | GTAC | 3 cut(s) | 100, 504, 522 |
| CviAII | CATG | 6 cut(s) | 18, 25, 217, 260, 388, 623 |
| CviQI | GTAC | 3 cut(s) | 100, 504, 522 |
| DpnI | GATC | 7 cut(s) | 34, 73, 194, 210, 450, 488, 566 |
| DpnII | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| DraI | TTTAAA | 1 cut(s) | 148 |
| Eam1104I | CTCTTC | 3 cut(s) | 166, 468, 550 |
| EarI | CTCTTC | 3 cut(s) | 166, 468, 550 |
| Eco130I | CCWWGG | 1 cut(s) | 259 |
| Eco47I | GGWCC | 2 cut(s) | 122, 320 |
| Eco88I | CYCGRG | 1 cut(s) | 560 |
| EcoRI | GAATTC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 2 cut(s) | 63, 489 |
| EcoT14I | CCWWGG | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 259 |
| Esp3I | CGTCTC | 1 cut(s) | 347 |
| FaeI | CATG | 6 cut(s) | 21, 28, 220, 263, 391, 626 |
| FatI | CATG | 6 cut(s) | 17, 24, 216, 259, 387, 622 |
| FbaI | TGATCA | 2 cut(s) | 208, 448 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| FokI | GGATG | 2 cut(s) | 541, 554 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| FspBI | CTAG | 1 cut(s) | 650 |
| GluI | GCNGC | 1 cut(s) | 78 |
| GsuI | CTGGAG | 1 cut(s) | 371 |
| HaeIII | GGCC | 2 cut(s) | 63, 332 |
| HapII | CCGG | 2 cut(s) | 380, 514 |
| Hin1II | CATG | 6 cut(s) | 21, 28, 220, 263, 391, 626 |
| HincII | GTYRAC | 1 cut(s) | 189 |
| HindII | GTYRAC | 1 cut(s) | 189 |
| HindIII | AAGCTT | 2 cut(s) | 129, 290 |
| HinfI | GANTC | 3 cut(s) | 174, 346, 517 |
| HpaII | CCGG | 2 cut(s) | 380, 514 |
| HphI | GGTGA | 3 cut(s) | 218, 379, 505 |
| Hpy166II | GTNNAC | 2 cut(s) | 189, 266 |
| Hpy188I | TCNGA | 1 cut(s) | 32 |
| Hpy188III | TCNNGA | 3 cut(s) | 350, 562, 571 |
| Hpy8I | GTNNAC | 2 cut(s) | 189, 266 |
| Hpy99I | CGWCG | 1 cut(s) | 468 |
| HpyAV | CCTTC | 2 cut(s) | 364, 583 |
| HpyCH4III | ACNGT | 3 cut(s) | 270, 342, 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 356, 463 |
| HpyCH4V | TGCA | 2 cut(s) | 85, 203 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpySE526I | ACGT | 2 cut(s) | 356, 463 |
| Hsp92II | CATG | 6 cut(s) | 21, 28, 220, 263, 391, 626 |
| Ksp22I | TGATCA | 2 cut(s) | 208, 448 |
| Kzo9I | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| LmnI | GCTCC | 1 cut(s) | 478 |
| LweI | GCATC | 1 cut(s) | 190 |
| MaeI | CTAG | 1 cut(s) | 650 |
| MaeII | ACGT | 2 cut(s) | 356, 463 |
| MaeIII | GTNAC | 2 cut(s) | 392, 493 |
| MalI | GATC | 7 cut(s) | 34, 73, 194, 210, 450, 488, 566 |
| MboI | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| MboII | GAAGA | 5 cut(s) | 107, 153, 485, 537, 677 |
| MflI | RGATCY | 2 cut(s) | 32, 486 |
| MhlI | GDGCHC | 1 cut(s) | 256 |
| MluCI | AATT | 2 cut(s) | 414, 539 |
| MlyI | GAGTC | 1 cut(s) | 355 |
| MmeI | TCCRAC | 2 cut(s) | 10, 298 |
| MnlI | CCTC | 4 cut(s) | 22, 322, 391, 469 |
| MseI | TTAA | 1 cut(s) | 147 |
| MspI | CCGG | 2 cut(s) | 380, 514 |
| MspR9I | CCNGG | 2 cut(s) | 65, 491 |
| MvaI | CCWGG | 2 cut(s) | 65, 491 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NcoI | CCATGG | 1 cut(s) | 259 |
| NdeII | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| NlaIII | CATG | 6 cut(s) | 21, 28, 220, 263, 391, 626 |
| NlaIV | GGNNCC | 1 cut(s) | 488 |
| NmuCI | GTSAC | 1 cut(s) | 493 |
| NspI | RCATGY | 2 cut(s) | 21, 391 |
| PaeI | GCATGC | 1 cut(s) | 391 |
| PaeR7I | CTCGAG | 1 cut(s) | 560 |
| PaqCI | CACCTGC | 1 cut(s) | 194 |
| PciI | ACATGT | 1 cut(s) | 17 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 188 |
| PfeI | GAWTC | 2 cut(s) | 174, 517 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| PleI | GAGTC | 1 cut(s) | 354 |
| PpsI | GAGTC | 1 cut(s) | 354 |
| PscI | ACATGT | 1 cut(s) | 17 |
| Psp6I | CCWGG | 2 cut(s) | 63, 489 |
| PspGI | CCWGG | 2 cut(s) | 63, 489 |
| PspN4I | GGNNCC | 1 cut(s) | 488 |
| PspPI | GGNCC | 2 cut(s) | 122, 320 |
| PsuI | RGATCY | 2 cut(s) | 32, 486 |
| RsaI | GTAC | 3 cut(s) | 101, 505, 523 |
| RsaNI | GTAC | 3 cut(s) | 100, 504, 522 |
| SaqAI | TTAA | 1 cut(s) | 147 |
| SatI | GCNGC | 1 cut(s) | 78 |
| Sau3AI | GATC | 7 cut(s) | 32, 71, 192, 208, 448, 486, 564 |
| Sau96I | GGNCC | 2 cut(s) | 122, 320 |
| SchI | GAGTC | 1 cut(s) | 355 |
| ScrFI | CCNGG | 2 cut(s) | 65, 491 |
| SduI | GDGCHC | 1 cut(s) | 256 |
| SfaNI | GCATC | 1 cut(s) | 190 |
| SfcI | CTRYAG | 1 cut(s) | 277 |
| Sfr274I | CTCGAG | 1 cut(s) | 560 |
| SinI | GGWCC | 2 cut(s) | 122, 320 |
| SlaI | CTCGAG | 1 cut(s) | 560 |
| SmlI | CTYRAG | 1 cut(s) | 560 |
| SmoI | CTYRAG | 1 cut(s) | 560 |
| SphI | GCATGC | 1 cut(s) | 391 |
| Sse9I | AATT | 2 cut(s) | 414, 539 |
| SsiI | CCGC | 2 cut(s) | 77, 365 |
| SspMI | CTAG | 1 cut(s) | 650 |
| StyD4I | CCNGG | 2 cut(s) | 63, 489 |
| StyI | CCWWGG | 1 cut(s) | 259 |
| TaaI | ACNGT | 3 cut(s) | 270, 342, 553 |
| TaiI | ACGT | 2 cut(s) | 359, 466 |
| TaqI | TCGA | 2 cut(s) | 442, 561 |
| TaqII | GACCGA | 1 cut(s) | 337 |
| TasI | AATT | 2 cut(s) | 414, 539 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 2 cut(s) | 174, 517 |
| Tru1I | TTAA | 1 cut(s) | 147 |
| Tru9I | TTAA | 1 cut(s) | 147 |
| TscAI | CASTG | 3 cut(s) | 87, 101, 345 |
| TseFI | GTSAC | 1 cut(s) | 493 |
| Tsp45I | GTSAC | 1 cut(s) | 493 |
| TspDTI | ATGAA | 1 cut(s) | 205 |
| TspRI | CASTG | 3 cut(s) | 87, 101, 345 |
| VpaK11BI | GGWCC | 2 cut(s) | 122, 320 |
| XapI | RAATTY | 1 cut(s) | 539 |
| XceI | RCATGY | 2 cut(s) | 21, 391 |
| XhoI | CTCGAG | 1 cut(s) | 560 |
| XspI | CTAG | 1 cut(s) | 650 |