Rorug01G0483600

Zinc knuckle

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
57063910 .. 57066970
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0483600.1

Sequence Viewer

Length: 1722 bp
ATGAAGATTTCGATTAGCCTGCAACTACTTTTGGGCTTGTTATTGGCTATTAATGGCATCCTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAGAAACTCCATACAAAAGATTGTGTAGCACAAAGAACATCTTGACTGTAAATGGTCAGTTTCCCGGACCGACTTTGTACGCTCGCAAAGGAGACACCGTCATCGTCGATGTCTTTAACAGGGGCAATCGTAACATTACTCTCCACTGGCATGGTGTTGACCAACCAAGGAATCCATGGTCGGACGGACCAGAGTATATCACGCAGTGCCCGATTCAACCAGGAGCCAATTTCACCCAAAAAATCATTTTTTCCGAGGAGGAAGGCACTCTTTGGTGGCATGCTCACAGTGAGTGGGATCGAGCCACTGTACATGGTGCCATCATCATATACCCCAACAAGGACAACAATTACCCTTTTGCCAAGCCTCATGCAGAAATCCCGATCATATTGGGAGAGTGGTGGAAGGAAGATATAGGGAAGCTTTATACTCAAACTCTTCAATCCGGAGGGGACCCTAATAATTCCTCCGCTTTCCTCATTAACGGTCAACCCGGCCATCGGTATCCATGCTCTGAATCAGAGACATTCAATCTGATAGTTGATTATGGCAAAACCTACCTACTGAGGCTAATCAATTCCGTTGTGCAAGAGATTATGTTTTTCTCCATCGCCAATCACAAAGTCACAGTTGTAGGGGCAGATGCTAGCTACACCAAGCCTTTCACAACCGATTATGTCACAATCTCACCTGGTCAAACCCTTGACCTTTTGCTCACTGCTAATCAGAAGCCTAACCACTACTACATGGCCGCTAAAGCCTATGTAGGTGGTGTTGGGGTTCCTTATGATAACACCACCTCCACAGCCCTACTGCAATACTCAAATCGCGGGTTAAAAAATTACACATACACCCCTTCTCCAACCCCTTCGTTTCCTACTCTTCCTGCCTACAATGACACTAATGCATCGGTTAATTTTTCCGGCAGTCTCAGAAGCTTAGCTGATAAGAACCACCCCATTGATGTTCCACTTAAAATTACAACTCACTTGTTTTACACAGTCTCCGTCAACTCGTTTCCCTGCCCGAATAATTCCTGCGGCGGGCCTAATGGGACACGTTTCGCCGCTAGCGTGAACAACATCAGCTTTGTGGACCCTAGCATTGACATACTACAAGCTTACTATTATCATGTCAACGGGGAATTTGGAACTCGCTTTCCAGATTTCCCGCCCTCGCTGTTTAATTTTACGGCGCAGGACTTGCCGCTGTACCTTCAGACTCCGAAACGAGGGACGGAGGTGAAGGTATTGGAGTACAACACCACGGTGGAGCTTGTGTTTCAAGGGACTAATTTGGTGTCAGGGGATGACCATCCAATGCATCTGCATGGTTACAGTTTCTATGTTGTTGGAATGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATATAATCTTGTCGATCCTCCTCTTCGGAACACCGTTATCGTCCCTGTAAATGGGTGGACTACCATTAGATTCAAGGCCAACAACCCTGGAGTTTGGTTTATGCACTGCCATCTGGATAGGCATATGTCGTGGGGCATGGACGTGACATTCATAGTGAAAAATGGAAAGGGCCCTCAAGCACAAATGTTACCTCCACCACCGGATATGCCACCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

573

Amino Acids

64.12

Weight (kDa)

6.54

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 35 - 149 5.7e-41 Multicopper oxidase
Cu-oxidase PF00394 162 - 311 3.3e-39 Multicopper oxidase
Cu-oxidase_2 PF07731 423 - 556 1e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 1 cut(s) 936
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 8 cut(s) 576, 858, 936, 1146, 1149, 1173, 1277, 1313
AclWI GGATC 2 cut(s) 411, 1511
AcoI YGGCCR 3 cut(s) 80, 601, 855
AcsI RAATTY 1 cut(s) 1250
AcuI CTGAAG 1 cut(s) 1307
AdeI CACNNNGTG 1 cut(s) 312
AfaI GTAC 4 cut(s) 185, 417, 1319, 1364
AfiI CCNNNNNNNGG 5 cut(s) 445, 606, 1149, 1337, 1553
AflIII ACRYGT 1 cut(s) 1163
AgsI TTSAA 6 cut(s) 323, 548, 637, 1391, 1501, 1576
AjiI CACGTC 1 cut(s) 1645
AjnI CCWGG 3 cut(s) 325, 796, 1588
AleI CACNNNNGTG 2 cut(s) 98, 1373
AloI GAACNNNNNNTCC 2 cut(s) 1249, 1281
AluBI AGCT 9 cut(s) 77, 86, 529, 756, 1044, 1049, 1194, 1226, 1381
AluI AGCT 9 cut(s) 77, 86, 529, 756, 1044, 1049, 1194, 1226, 1381
Alw26I GTCTC 4 cut(s) 192, 623, 1040, 1114
AlwI GGATC 2 cut(s) 411, 1511
Aor13HI TCCGGA 1 cut(s) 551
AoxI GGCC 6 cut(s) 80, 601, 855, 1151, 1578, 1672
ApaI GGGCCC 1 cut(s) 1676
ApoI RAATTY 1 cut(s) 1250
AseI ATTAAT 1 cut(s) 51
AspLEI GCGC 1 cut(s) 1303
AspS9I GGNCC 8 cut(s) 173, 293, 559, 1151, 1201, 1492, 1672, 1673
AsuC2I CCSGG 2 cut(s) 171, 600
AsuHPI GGTGA 3 cut(s) 331, 786, 1360
AsuNHI GCTAGC 2 cut(s) 752, 1175
AvaII GGWCC 5 cut(s) 173, 293, 559, 1201, 1492
BaeGI GKGCMC 2 cut(s) 317, 1676
BalI TGGCCA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 1676
BccI CCATC 5 cut(s) 434, 612, 722, 1428, 1620
BceAI ACGGC 1 cut(s) 1314
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 327, 798, 1590
BciVI GTATCC 1 cut(s) 621
BcnI CCSGG 2 cut(s) 171, 600
BcoDI GTCTC 4 cut(s) 192, 623, 1040, 1114
BfaI CTAG 3 cut(s) 753, 1176, 1206
BfuI GTATCC 1 cut(s) 621
BisI GCNGC 4 cut(s) 858, 1147, 1173, 1313
BlpI GCTNAGC 1 cut(s) 1045
BlsI GCNGC 4 cut(s) 859, 1148, 1174, 1314
Bme1390I CCNGG 5 cut(s) 171, 327, 600, 798, 1590
Bme18I GGWCC 5 cut(s) 173, 293, 559, 1201, 1492
BmgBI CACGTC 1 cut(s) 1645
BmgT120I GGNCC 8 cut(s) 173, 293, 559, 1151, 1201, 1492, 1672, 1673
BmiI GGNNCC 8 cut(s) 331, 424, 560, 561, 888, 1203, 1494, 1674
BmrFI CCNGG 5 cut(s) 171, 327, 600, 798, 1590
BmsI GCATC 4 cut(s) 66, 739, 1022, 1438
BmtI GCTAGC 2 cut(s) 756, 1179
BpmI CTGGAG 1 cut(s) 1611
Bpu1102I GCTNAGC 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 1662
BpuMI CCSGG 2 cut(s) 171, 600
BsaBI GATNNNNATC 1 cut(s) 1419
BsaJI CCNNGG 5 cut(s) 272, 281, 360, 1371, 1588
BsaWI WCCGGW 2 cut(s) 551, 1702
Bsc4I CCNNNNNNNGG 5 cut(s) 445, 606, 1149, 1337, 1553
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 1419
BseAI TCCGGA 1 cut(s) 551
BseBI CCWGG 3 cut(s) 327, 798, 1590
BseDI CCNNGG 5 cut(s) 272, 281, 360, 1371, 1588
BseGI GGATG 3 cut(s) 57, 1420, 1420
BseJI GATNNNNATC 1 cut(s) 1419
BseLI CCNNNNNNNGG 5 cut(s) 445, 606, 1149, 1337, 1553
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 662, 1051
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 3 cut(s) 53, 377, 1512
BseSI GKGCMC 2 cut(s) 317, 1676
Bsh1236I CGCG 1 cut(s) 936
BshFI GGCC 6 cut(s) 82, 603, 857, 1153, 1580, 1674
BshNI GGYRCC 1 cut(s) 422
BsiSI CCGG 5 cut(s) 171, 552, 600, 1029, 1703
BslFI GGGAC 5 cut(s) 572, 1174, 1354, 1408, 1529
BslI CCNNNNNNNGG 5 cut(s) 445, 606, 1149, 1337, 1553
BsmAI GTCTC 4 cut(s) 192, 623, 1040, 1114
BsmFI GGGAC 5 cut(s) 572, 1174, 1354, 1408, 1529
BsnI GGCC 6 cut(s) 82, 603, 857, 1153, 1580, 1674
Bsp120I GGGCCC 1 cut(s) 1672
Bsp1286I GDGCHC 2 cut(s) 317, 1676
Bsp13I TCCGGA 1 cut(s) 551
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 3 cut(s) 403, 489, 1516
Bsp1720I GCTNAGC 1 cut(s) 1045
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 8 cut(s) 576, 858, 936, 1146, 1149, 1173, 1277, 1313
BspANI GGCC 6 cut(s) 82, 603, 857, 1153, 1580, 1674
BspCNI CTCAG 2 cut(s) 663, 1050
BspEI TCCGGA 1 cut(s) 551
BspFNI CGCG 1 cut(s) 936
BspLI GGNNCC 8 cut(s) 331, 424, 560, 561, 888, 1203, 1494, 1674
BspOI GCTAGC 2 cut(s) 756, 1179
BspPI GGATC 2 cut(s) 411, 1511
BspT107I GGYRCC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 415
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 5 cut(s) 272, 281, 360, 1371, 1588
BssMI GATC 3 cut(s) 403, 489, 1516
BssT1I CCWWGG 2 cut(s) 272, 281
Bst2UI CCWGG 3 cut(s) 327, 798, 1590
Bst6I CTCTTC 3 cut(s) 549, 993, 1530
BstAPI GCANNNNNTGC 1 cut(s) 1309
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 7 cut(s) 20, 84, 190, 387, 754, 1151, 1177
BstDEI CTNAG 3 cut(s) 671, 1037, 1045
BstDSI CCRYGG 2 cut(s) 281, 1371
BstF5I GGATG 3 cut(s) 57, 1420, 1420
BstFNI CGCG 1 cut(s) 936
BstHHI GCGC 1 cut(s) 1303
BstKTI GATC 3 cut(s) 406, 492, 1519
BstMAI GTCTC 4 cut(s) 192, 623, 1040, 1114
BstMBI GATC 3 cut(s) 403, 489, 1516
BstMWI GCNNNNNNNGC 3 cut(s) 83, 863, 1309
BstNI CCWGG 3 cut(s) 327, 798, 1590
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 5 cut(s) 169, 325, 598, 796, 1588
BstSLI GKGCMC 2 cut(s) 317, 1676
BstUI CGCG 1 cut(s) 936
BstXI CCANNNNNNTGG 1 cut(s) 257
BsuI GTATCC 1 cut(s) 621
BsuRI GGCC 6 cut(s) 82, 603, 857, 1153, 1580, 1674
BtgI CCRYGG 2 cut(s) 281, 1371
BtgZI GCGATG 1 cut(s) 700
BtrI CACGTC 1 cut(s) 1645
BtsCI GGATG 3 cut(s) 57, 1420, 1420
BtsI GCAGTG 3 cut(s) 317, 822, 1606
BtsIMutI CAGTG 6 cut(s) 250, 317, 400, 411, 822, 1606
Cac8I GCNNGC 7 cut(s) 20, 84, 190, 387, 754, 1151, 1177
CfoI GCGC 1 cut(s) 1303
Cfr13I GGNCC 8 cut(s) 173, 293, 559, 1151, 1201, 1492, 1672, 1673
CpoI CGGWCCG 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 4 cut(s) 184, 416, 1318, 1363
CspI CGGWCCG 1 cut(s) 173
CviQI GTAC 4 cut(s) 184, 416, 1318, 1363
DdeI CTNAG 3 cut(s) 671, 1037, 1045
DpnI GATC 3 cut(s) 405, 491, 1518
DpnII GATC 3 cut(s) 403, 489, 1516
DraIII CACNNNGTG 1 cut(s) 312
EaeI YGGCCR 3 cut(s) 80, 601, 855
Eam1104I CTCTTC 3 cut(s) 549, 993, 1530
EarI CTCTTC 3 cut(s) 549, 993, 1530
Eco130I CCWWGG 2 cut(s) 272, 281
Eco24I GRGCYC 1 cut(s) 1676
Eco47I GGWCC 5 cut(s) 173, 293, 559, 1201, 1492
Eco57I CTGAAG 1 cut(s) 1307
EcoO109I RGGNCCY 4 cut(s) 559, 1492, 1672, 1673
EcoRII CCWGG 3 cut(s) 325, 796, 1588
EcoT14I CCWWGG 2 cut(s) 272, 281
EcoT22I ATGCAT 2 cut(s) 1015, 1431
EcoT38I GRGCYC 1 cut(s) 1676
ErhI CCWWGG 2 cut(s) 272, 281
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 360, 392
FaqI GGGAC 5 cut(s) 572, 1174, 1354, 1408, 1529
FauI CCCGC 3 cut(s) 929, 1142, 1284
FauNDI CATATG 1 cut(s) 1626
Fnu4HI GCNGC 4 cut(s) 858, 1147, 1173, 1313
FokI GGATG 3 cut(s) 44, 1407, 1427
FriOI GRGCYC 1 cut(s) 1676
Fsp4HI GCNGC 4 cut(s) 858, 1147, 1173, 1313
FspBI CTAG 3 cut(s) 753, 1176, 1206
GlaI GCGC 1 cut(s) 1302
GluI GCNGC 4 cut(s) 858, 1147, 1173, 1313
GsuI CTGGAG 1 cut(s) 1611
HaeIII GGCC 6 cut(s) 82, 603, 857, 1153, 1580, 1674
HapII CCGG 5 cut(s) 171, 552, 600, 1029, 1703
HhaI GCGC 1 cut(s) 1303
Hin6I GCGC 1 cut(s) 1301
HinP1I GCGC 1 cut(s) 1301
HincII GTYRAC 4 cut(s) 265, 596, 1117, 1243
HindII GTYRAC 4 cut(s) 265, 596, 1117, 1243
HindIII AAGCTT 4 cut(s) 75, 527, 1042, 1224
HinfI GANTC 5 cut(s) 277, 319, 623, 1327, 1572
HpaII CCGG 5 cut(s) 171, 552, 600, 1029, 1703
HphI GGTGA 3 cut(s) 331, 786, 1360
Hpy166II GTNNAC 7 cut(s) 265, 596, 1117, 1183, 1201, 1243, 1560
Hpy188III TCNNGA 5 cut(s) 148, 487, 552, 1268, 1616
Hpy8I GTNNAC 7 cut(s) 265, 596, 1117, 1183, 1201, 1243, 1560
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 6 cut(s) 362, 505, 972, 984, 1331, 1345
HpyCH4IV ACGT 2 cut(s) 1165, 1644
HpyCH4V TGCA 8 cut(s) 22, 479, 694, 922, 1013, 1429, 1435, 1606
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 863, 1309
HpyF3I CTNAG 3 cut(s) 671, 1037, 1045
HpySE526I ACGT 2 cut(s) 1165, 1644
HspAI GCGC 1 cut(s) 1301
KflI GGGWCCC 1 cut(s) 559
Kpn2I TCCGGA 1 cut(s) 551
Kzo9I GATC 3 cut(s) 403, 489, 1516
LmnI GCTCC 2 cut(s) 329, 1378
LweI GCATC 4 cut(s) 66, 739, 1022, 1438
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 3 cut(s) 753, 1176, 1206
MaeII ACGT 2 cut(s) 1165, 1644
MaeIII GTNAC 7 cut(s) 89, 236, 730, 784, 1439, 1645, 1689
MalI GATC 3 cut(s) 405, 491, 1518
MboI GATC 3 cut(s) 403, 489, 1516
MboII GAAGA 6 cut(s) 16, 119, 527, 536, 980, 1517
MhlI GDGCHC 2 cut(s) 317, 1676
MlsI TGGCCA 1 cut(s) 82
MluNI TGGCCA 1 cut(s) 82
MlyI GAGTC 1 cut(s) 1321
MmeI TCCRAC 3 cut(s) 267, 992, 1438
Mox20I TGGCCA 1 cut(s) 82
Mph1103I ATGCAT 2 cut(s) 1015, 1431
MroI TCCGGA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 82
MseI TTAA 8 cut(s) 51, 222, 588, 941, 1020, 1080, 1290, 1720
MslI CAYNNNNRTG 5 cut(s) 98, 255, 1373, 1434, 1643
Msp20I TGGCCA 1 cut(s) 82
MspA1I CMGCKG 1 cut(s) 1315
MspI CCGG 5 cut(s) 171, 552, 600, 1029, 1703
MspR9I CCNGG 5 cut(s) 171, 327, 600, 798, 1590
MvaI CCWGG 3 cut(s) 327, 798, 1590
MvnI CGCG 1 cut(s) 936
MwoI GCNNNNNNNGC 3 cut(s) 83, 863, 1309
NciI CCSGG 2 cut(s) 171, 600
NcoI CCATGG 1 cut(s) 281
NdeI CATATG 1 cut(s) 1626
NdeII GATC 3 cut(s) 403, 489, 1516
NheI GCTAGC 2 cut(s) 752, 1175
NlaIV GGNNCC 8 cut(s) 331, 424, 560, 561, 888, 1203, 1494, 1674
NmuCI GTSAC 3 cut(s) 730, 784, 1645
NsiI ATGCAT 2 cut(s) 1015, 1431
NspI RCATGY 1 cut(s) 389
OliI CACNNNNGTG 2 cut(s) 98, 1373
PaeI GCATGC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 2 cut(s) 314, 1176
PfeI GAWTC 4 cut(s) 277, 319, 623, 1572
PflFI GACNNNGTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 4 cut(s) 859, 1148, 1174, 1314
PleI GAGTC 1 cut(s) 1321
PpsI GAGTC 1 cut(s) 1321
PpuMI RGGWCCY 2 cut(s) 559, 1492
PshBI ATTAAT 1 cut(s) 51
Psp5II RGGWCCY 2 cut(s) 559, 1492
Psp6I CCWGG 3 cut(s) 325, 796, 1588
PspGI CCWGG 3 cut(s) 325, 796, 1588
PspN4I GGNNCC 8 cut(s) 331, 424, 560, 561, 888, 1203, 1494, 1674
PspOMI GGGCCC 1 cut(s) 1672
PspPI GGNCC 8 cut(s) 173, 293, 559, 1151, 1201, 1492, 1672, 1673
PspPPI RGGWCCY 2 cut(s) 559, 1492
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 4 cut(s) 185, 417, 1319, 1364
RsaNI GTAC 4 cut(s) 184, 416, 1318, 1363
RseI CAYNNNNRTG 5 cut(s) 98, 255, 1373, 1434, 1643
Rsr2I CGGWCCG 1 cut(s) 173
RsrII CGGWCCG 1 cut(s) 173
SaqAI TTAA 8 cut(s) 51, 222, 588, 941, 1020, 1080, 1290, 1720
SatI GCNGC 4 cut(s) 858, 1147, 1173, 1313
Sau3AI GATC 3 cut(s) 403, 489, 1516
Sau96I GGNCC 8 cut(s) 173, 293, 559, 1151, 1201, 1492, 1672, 1673
SchI GAGTC 1 cut(s) 1321
ScrFI CCNGG 5 cut(s) 171, 327, 600, 798, 1590
SduI GDGCHC 2 cut(s) 317, 1676
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 4 cut(s) 66, 739, 1022, 1438
SinI GGWCC 5 cut(s) 173, 293, 559, 1201, 1492
SmiMI CAYNNNNRTG 5 cut(s) 98, 255, 1373, 1434, 1643
SmlI CTYRAG 1 cut(s) 1677
SmoI CTYRAG 1 cut(s) 1677
SphI GCATGC 1 cut(s) 389
SsiI CCGC 8 cut(s) 576, 858, 936, 1146, 1149, 1173, 1277, 1313
SspMI CTAG 3 cut(s) 753, 1176, 1206
StyD4I CCNGG 5 cut(s) 169, 325, 598, 796, 1588
StyI CCWWGG 2 cut(s) 272, 281
TaiI ACGT 2 cut(s) 1168, 1647
TaqI TCGA 4 cut(s) 11, 213, 406, 1515
TaqII GACCGA 1 cut(s) 190
TatI WGTACW 2 cut(s) 415, 1362
TauI GCSGC 4 cut(s) 860, 1149, 1175, 1315
TfiI GAWTC 4 cut(s) 277, 319, 623, 1572
Tru1I TTAA 8 cut(s) 51, 222, 588, 941, 1020, 1080, 1290, 1720
Tru9I TTAA 8 cut(s) 51, 222, 588, 941, 1020, 1080, 1290, 1720
TscAI CASTG 6 cut(s) 257, 317, 400, 418, 829, 1613
TseFI GTSAC 3 cut(s) 730, 784, 1645
Tsp45I GTSAC 3 cut(s) 730, 784, 1645
TspDTI ATGAA 2 cut(s) 17, 1642
TspGWI ACGGA 4 cut(s) 306, 676, 1102, 1358
TspRI CASTG 6 cut(s) 257, 317, 400, 418, 829, 1613
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 5 cut(s) 173, 293, 559, 1201, 1492
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 1 cut(s) 1250
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XspI CTAG 3 cut(s) 753, 1176, 1206
Zsp2I ATGCAT 2 cut(s) 1015, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.