Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1027, 1279 |
| Acc65I | GGTACC | 1 cut(s) | 1267 |
| AccB1I | GGYRCC | 1 cut(s) | 1267 |
| AccBSI | CCGCTC | 1 cut(s) | 68 |
| AciI | CCGC | 6 cut(s) | 68, 71, 263, 567, 848, 1049 |
| AclWI | GGATC | 1 cut(s) | 254 |
| AcsI | RAATTY | 1 cut(s) | 704 |
| AcuI | CTGAAG | 1 cut(s) | 1296 |
| AcyI | GRCGYC | 2 cut(s) | 166, 337 |
| AfaI | GTAC | 3 cut(s) | 688, 1030, 1269 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 244, 272, 415, 508, 509 |
| AgeI | ACCGGT | 1 cut(s) | 544 |
| AgsI | TTSAA | 6 cut(s) | 79, 142, 313, 704, 785, 1336 |
| AjnI | CCWGG | 6 cut(s) | 125, 132, 267, 296, 303, 434 |
| AluBI | AGCT | 3 cut(s) | 233, 404, 1087 |
| AluI | AGCT | 3 cut(s) | 233, 404, 1087 |
| Alw21I | GWGCWC | 2 cut(s) | 149, 320 |
| Alw26I | GTCTC | 4 cut(s) | 173, 344, 1217, 1323 |
| AlwI | GGATC | 1 cut(s) | 254 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 1 cut(s) | 775 |
| ApeKI | GCWGC | 3 cut(s) | 841, 1162, 1165 |
| ApoI | RAATTY | 1 cut(s) | 704 |
| AsiGI | ACCGGT | 1 cut(s) | 544 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1050 |
| Asp718I | GGTACC | 1 cut(s) | 1267 |
| AspS9I | GGNCC | 3 cut(s) | 116, 287, 431 |
| AsuHPI | GGTGA | 6 cut(s) | 212, 269, 383, 479, 913, 1273 |
| AsuII | TTCGAA | 1 cut(s) | 1064 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| AvaII | GGWCC | 3 cut(s) | 116, 287, 431 |
| BanI | GGYRCC | 1 cut(s) | 1267 |
| BanII | GRGCYC | 2 cut(s) | 250, 421 |
| Bbv12I | GWGCWC | 2 cut(s) | 149, 320 |
| BbvCI | CCTCAGC | 1 cut(s) | 866 |
| BbvI | GCAGC | 3 cut(s) | 853, 1149, 1177 |
| BciT130I | CCWGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| BciVI | GTATCC | 1 cut(s) | 661 |
| BclI | TGATCA | 1 cut(s) | 613 |
| BcoDI | GTCTC | 4 cut(s) | 173, 344, 1217, 1323 |
| BfaI | CTAG | 2 cut(s) | 12, 1200 |
| BfmI | CTRYAG | 2 cut(s) | 442, 1163 |
| BfuAI | ACCTGC | 2 cut(s) | 1027, 1279 |
| BfuI | GTATCC | 1 cut(s) | 661 |
| BglII | AGATCT | 3 cut(s) | 173, 344, 519 |
| BisI | GCNGC | 5 cut(s) | 69, 72, 842, 1163, 1166 |
| BlsI | GCNGC | 5 cut(s) | 70, 73, 843, 1164, 1167 |
| Bme1390I | CCNGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| Bme18I | GGWCC | 3 cut(s) | 116, 287, 431 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 3 cut(s) | 116, 287, 431 |
| BmiI | GGNNCC | 8 cut(s) | 28, 131, 302, 433, 586, 1047, 1078, 1269 |
| BmrFI | CCNGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| BmsI | GCATC | 2 cut(s) | 781, 1149 |
| Bpu10I | CCTNAGC | 1 cut(s) | 866 |
| Bpu14I | TTCGAA | 1 cut(s) | 1064 |
| BsaHI | GRCGYC | 2 cut(s) | 166, 337 |
| BsaJI | CCNNGG | 4 cut(s) | 133, 267, 304, 434 |
| BsaWI | WCCGGW | 2 cut(s) | 237, 544 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 821, 851 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 244, 272, 415, 508, 509 |
| Bse118I | RCCGGY | 2 cut(s) | 544, 850 |
| Bse1I | ACTGG | 4 cut(s) | 95, 217, 388, 1030 |
| BseBI | CCWGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| BseDI | CCNNGG | 4 cut(s) | 133, 267, 304, 434 |
| BseGI | GGATG | 7 cut(s) | 155, 326, 486, 699, 883, 1147, 1237 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 244, 272, 415, 508, 509 |
| BseMII | CTCAG | 4 cut(s) | 184, 355, 857, 1023 |
| BseNI | ACTGG | 4 cut(s) | 95, 217, 388, 1030 |
| BseRI | GAGGAG | 5 cut(s) | 653, 656, 887, 1235, 1311 |
| BseXI | GCAGC | 3 cut(s) | 853, 1149, 1177 |
| BsgI | GTGCAG | 1 cut(s) | 1313 |
| BshFI | GGCC | 1 cut(s) | 777 |
| BshNI | GGYRCC | 1 cut(s) | 1267 |
| BshTI | ACCGGT | 1 cut(s) | 544 |
| BsiHKAI | GWGCWC | 2 cut(s) | 149, 320 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 3 cut(s) | 238, 545, 851 |
| BslFI | GGGAC | 2 cut(s) | 417, 485 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 244, 272, 415, 508, 509 |
| BsmAI | GTCTC | 4 cut(s) | 173, 344, 1217, 1323 |
| BsmBI | CGTCTC | 2 cut(s) | 173, 344 |
| BsmFI | GGGAC | 2 cut(s) | 417, 485 |
| BsnI | GGCC | 1 cut(s) | 777 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp119I | TTCGAA | 1 cut(s) | 1064 |
| Bsp1286I | GDGCHC | 4 cut(s) | 149, 250, 320, 421 |
| BspACI | CCGC | 6 cut(s) | 68, 71, 263, 567, 848, 1049 |
| BspANI | GGCC | 1 cut(s) | 777 |
| BspCNI | CTCAG | 4 cut(s) | 183, 354, 858, 1024 |
| BspLI | GGNNCC | 8 cut(s) | 28, 131, 302, 433, 586, 1047, 1078, 1269 |
| BspMAI | CTGCAG | 1 cut(s) | 1167 |
| BspMI | ACCTGC | 2 cut(s) | 1027, 1279 |
| BspPI | GGATC | 1 cut(s) | 254 |
| BspQI | GCTCTTC | 3 cut(s) | 255, 426, 1122 |
| BspT104I | TTCGAA | 1 cut(s) | 1064 |
| BspT107I | GGYRCC | 1 cut(s) | 1267 |
| BsrBI | CCGCTC | 1 cut(s) | 68 |
| BsrFI | RCCGGY | 2 cut(s) | 544, 850 |
| BsrI | ACTGG | 4 cut(s) | 95, 217, 388, 1030 |
| BssAI | RCCGGY | 2 cut(s) | 544, 850 |
| BssECI | CCNNGG | 4 cut(s) | 133, 267, 304, 434 |
| BssNI | GRCGYC | 2 cut(s) | 166, 337 |
| Bst2UI | CCWGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| Bst4CI | ACNGT | 5 cut(s) | 718, 837, 940, 1107, 1228 |
| Bst6I | CTCTTC | 7 cut(s) | 218, 255, 389, 426, 630, 1122, 1205 |
| BstACI | GRCGYC | 2 cut(s) | 166, 337 |
| BstBI | TTCGAA | 1 cut(s) | 1064 |
| BstC8I | GCNNGC | 2 cut(s) | 953, 1296 |
| BstDEI | CTNAG | 4 cut(s) | 170, 341, 866, 1032 |
| BstEII | GGTNACC | 1 cut(s) | 540 |
| BstF5I | GGATG | 7 cut(s) | 155, 326, 486, 699, 883, 1147, 1237 |
| BstMAI | GTCTC | 4 cut(s) | 173, 344, 1217, 1323 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 847 |
| BstNI | CCWGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| BstPI | GGTNACC | 1 cut(s) | 540 |
| BstSCI | CCNGG | 6 cut(s) | 125, 132, 267, 296, 303, 434 |
| BstSFI | CTRYAG | 2 cut(s) | 442, 1163 |
| BstV1I | GCAGC | 3 cut(s) | 853, 1149, 1177 |
| BstX2I | RGATCY | 3 cut(s) | 173, 344, 519 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 133, 162, 304, 333 |
| BstYI | RGATCY | 3 cut(s) | 173, 344, 519 |
| BsuI | GTATCC | 1 cut(s) | 661 |
| BsuRI | GGCC | 1 cut(s) | 777 |
| BtsCI | GGATG | 7 cut(s) | 155, 326, 486, 699, 883, 1147, 1237 |
| BtsIMutI | CAGTG | 2 cut(s) | 88, 575 |
| BveI | ACCTGC | 2 cut(s) | 1027, 1279 |
| Cac8I | GCNNGC | 2 cut(s) | 953, 1296 |
| Cfr10I | RCCGGY | 2 cut(s) | 544, 850 |
| Cfr13I | GGNCC | 3 cut(s) | 116, 287, 431 |
| CseI | GACGC | 2 cut(s) | 155, 326 |
| CsiI | ACCWGGT | 2 cut(s) | 125, 296 |
| Csp6I | GTAC | 3 cut(s) | 687, 1029, 1268 |
| CspAI | ACCGGT | 1 cut(s) | 544 |
| CviQI | GTAC | 3 cut(s) | 687, 1029, 1268 |
| DdeI | CTNAG | 4 cut(s) | 170, 341, 866, 1032 |
| Eam1104I | CTCTTC | 7 cut(s) | 218, 255, 389, 426, 630, 1122, 1205 |
| EarI | CTCTTC | 7 cut(s) | 218, 255, 389, 426, 630, 1122, 1205 |
| EciI | GGCGGA | 1 cut(s) | 252 |
| Eco24I | GRGCYC | 2 cut(s) | 250, 421 |
| Eco47I | GGWCC | 3 cut(s) | 116, 287, 431 |
| Eco57I | CTGAAG | 1 cut(s) | 1296 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| Eco91I | GGTNACC | 1 cut(s) | 540 |
| EcoO65I | GGTNACC | 1 cut(s) | 540 |
| EcoRII | CCWGG | 6 cut(s) | 125, 132, 267, 296, 303, 434 |
| EcoT22I | ATGCAT | 1 cut(s) | 1014 |
| EcoT38I | GRGCYC | 2 cut(s) | 250, 421 |
| Esp3I | CGTCTC | 2 cut(s) | 173, 344 |
| FaqI | GGGAC | 2 cut(s) | 417, 485 |
| FbaI | TGATCA | 1 cut(s) | 613 |
| Fnu4HI | GCNGC | 5 cut(s) | 69, 72, 842, 1163, 1166 |
| FokI | GGATG | 7 cut(s) | 142, 313, 493, 706, 890, 1154, 1244 |
| FriOI | GRGCYC | 2 cut(s) | 250, 421 |
| Fsp4HI | GCNGC | 5 cut(s) | 69, 72, 842, 1163, 1166 |
| FspBI | CTAG | 2 cut(s) | 12, 1200 |
| GluI | GCNGC | 5 cut(s) | 69, 72, 842, 1163, 1166 |
| HaeIII | GGCC | 1 cut(s) | 777 |
| HapII | CCGG | 3 cut(s) | 238, 545, 851 |
| HgaI | GACGC | 2 cut(s) | 155, 326 |
| Hin1I | GRCGYC | 2 cut(s) | 166, 337 |
| HincII | GTYRAC | 1 cut(s) | 1240 |
| HindII | GTYRAC | 1 cut(s) | 1240 |
| HinfI | GANTC | 7 cut(s) | 138, 309, 604, 651, 904, 996, 1316 |
| HpaI | GTTAAC | 1 cut(s) | 1240 |
| HpaII | CCGG | 3 cut(s) | 238, 545, 851 |
| HphI | GGTGA | 6 cut(s) | 212, 269, 383, 479, 913, 1273 |
| Hpy166II | GTNNAC | 1 cut(s) | 1240 |
| Hpy188I | TCNGA | 5 cut(s) | 173, 344, 558, 660, 1045 |
| Hpy188III | TCNNGA | 6 cut(s) | 142, 227, 313, 398, 814, 1127 |
| Hpy8I | GTNNAC | 1 cut(s) | 1240 |
| Hpy99I | CGWCG | 3 cut(s) | 633, 678, 681 |
| HpyAV | CCTTC | 5 cut(s) | 73, 563, 748, 1277, 1336 |
| HpyCH4III | ACNGT | 5 cut(s) | 718, 837, 940, 1107, 1228 |
| HpyCH4IV | ACGT | 1 cut(s) | 963 |
| HpyCH4V | TGCA | 9 cut(s) | 722, 765, 841, 943, 955, 1012, 1135, 1165, 1294 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 847 |
| HpyF3I | CTNAG | 4 cut(s) | 170, 341, 866, 1032 |
| HpySE526I | ACGT | 1 cut(s) | 963 |
| Hsp92I | GRCGYC | 2 cut(s) | 166, 337 |
| KpnI | GGTACC | 1 cut(s) | 1271 |
| Ksp22I | TGATCA | 1 cut(s) | 613 |
| KspAI | GTTAAC | 1 cut(s) | 1240 |
| LguI | GCTCTTC | 3 cut(s) | 255, 426, 1122 |
| LmnI | GCTCC | 3 cut(s) | 65, 590, 1076 |
| Lsp1109I | GCAGC | 3 cut(s) | 853, 1149, 1177 |
| LweI | GCATC | 2 cut(s) | 781, 1149 |
| MabI | ACCWGGT | 2 cut(s) | 125, 296 |
| MaeI | CTAG | 2 cut(s) | 12, 1200 |
| MaeII | ACGT | 1 cut(s) | 963 |
| MaeIII | GTNAC | 3 cut(s) | 540, 931, 978 |
| MbiI | CCGCTC | 1 cut(s) | 68 |
| MboII | GAAGA | 8 cut(s) | 205, 242, 376, 413, 617, 1109, 1157, 1222 |
| MflI | RGATCY | 3 cut(s) | 173, 344, 519 |
| MhlI | GDGCHC | 4 cut(s) | 149, 250, 320, 421 |
| MluCI | AATT | 2 cut(s) | 704, 1130 |
| MlyI | GAGTC | 2 cut(s) | 1005, 1325 |
| Mph1103I | ATGCAT | 1 cut(s) | 1014 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1050 |
| MseI | TTAA | 6 cut(s) | 572, 732, 1007, 1191, 1239, 1345 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1173 |
| MspI | CCGG | 3 cut(s) | 238, 545, 851 |
| MspR9I | CCNGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| MvaI | CCWGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 847 |
| NlaIV | GGNNCC | 8 cut(s) | 28, 131, 302, 433, 586, 1047, 1078, 1269 |
| NmuCI | GTSAC | 1 cut(s) | 978 |
| NsiI | ATGCAT | 1 cut(s) | 1014 |
| NspV | TTCGAA | 1 cut(s) | 1064 |
| PciSI | GCTCTTC | 3 cut(s) | 255, 426, 1122 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 682 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1050 |
| PfeI | GAWTC | 5 cut(s) | 138, 309, 604, 651, 904 |
| PinAI | ACCGGT | 1 cut(s) | 544 |
| PkrI | GCNGC | 5 cut(s) | 70, 73, 843, 1164, 1167 |
| PleI | GAGTC | 2 cut(s) | 1004, 1324 |
| PpsI | GAGTC | 2 cut(s) | 1004, 1324 |
| Psp6I | CCWGG | 6 cut(s) | 125, 132, 267, 296, 303, 434 |
| PspEI | GGTNACC | 1 cut(s) | 540 |
| PspGI | CCWGG | 6 cut(s) | 125, 132, 267, 296, 303, 434 |
| PspN4I | GGNNCC | 8 cut(s) | 28, 131, 302, 433, 586, 1047, 1078, 1269 |
| PspPI | GGNCC | 3 cut(s) | 116, 287, 431 |
| PstI | CTGCAG | 1 cut(s) | 1167 |
| PsuI | RGATCY | 3 cut(s) | 173, 344, 519 |
| RsaI | GTAC | 3 cut(s) | 688, 1030, 1269 |
| RsaNI | GTAC | 3 cut(s) | 687, 1029, 1268 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1173 |
| SapI | GCTCTTC | 3 cut(s) | 255, 426, 1122 |
| SaqAI | TTAA | 6 cut(s) | 572, 732, 1007, 1191, 1239, 1345 |
| SatI | GCNGC | 5 cut(s) | 69, 72, 842, 1163, 1166 |
| Sau96I | GGNCC | 3 cut(s) | 116, 287, 431 |
| SchI | GAGTC | 2 cut(s) | 1005, 1325 |
| ScrFI | CCNGG | 6 cut(s) | 127, 134, 269, 298, 305, 436 |
| SduI | GDGCHC | 4 cut(s) | 149, 250, 320, 421 |
| SexAI | ACCWGGT | 2 cut(s) | 125, 296 |
| SfaNI | GCATC | 2 cut(s) | 781, 1149 |
| SfcI | CTRYAG | 2 cut(s) | 442, 1163 |
| SfuI | TTCGAA | 1 cut(s) | 1064 |
| SgrAI | CRCCGGYG | 1 cut(s) | 850 |
| SinI | GGWCC | 3 cut(s) | 116, 287, 431 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1173 |
| Sse9I | AATT | 2 cut(s) | 704, 1130 |
| SsiI | CCGC | 6 cut(s) | 68, 71, 263, 567, 848, 1049 |
| SspMI | CTAG | 2 cut(s) | 12, 1200 |
| StyD4I | CCNGG | 6 cut(s) | 125, 132, 267, 296, 303, 434 |
| TaaI | ACNGT | 5 cut(s) | 718, 837, 940, 1107, 1228 |
| TaiI | ACGT | 1 cut(s) | 966 |
| TaqI | TCGA | 1 cut(s) | 1064 |
| TasI | AATT | 2 cut(s) | 704, 1130 |
| TauI | GCSGC | 2 cut(s) | 71, 74 |
| TfiI | GAWTC | 5 cut(s) | 138, 309, 604, 651, 904 |
| Tru1I | TTAA | 6 cut(s) | 572, 732, 1007, 1191, 1239, 1345 |
| Tru9I | TTAA | 6 cut(s) | 572, 732, 1007, 1191, 1239, 1345 |
| TscAI | CASTG | 2 cut(s) | 95, 582 |
| TseFI | GTSAC | 1 cut(s) | 978 |
| TseI | GCWGC | 3 cut(s) | 841, 1162, 1165 |
| Tsp45I | GTSAC | 1 cut(s) | 978 |
| TspDTI | ATGAA | 6 cut(s) | 242, 413, 833, 1158, 1318, 1322 |
| TspRI | CASTG | 2 cut(s) | 95, 582 |
| VpaK11BI | GGWCC | 3 cut(s) | 116, 287, 431 |
| XapI | RAATTY | 1 cut(s) | 704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1050 |
| XspI | CTAG | 2 cut(s) | 12, 1200 |
| Zsp2I | ATGCAT | 1 cut(s) | 1014 |