Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 432 |
| AciI | CCGC | 2 cut(s) | 73, 562 |
| AclWI | GGATC | 3 cut(s) | 83, 408, 472 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcsI | RAATTY | 4 cut(s) | 128, 258, 461, 748 |
| AcyI | GRCGYC | 1 cut(s) | 658 |
| AfaI | GTAC | 3 cut(s) | 112, 321, 361 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 511, 512 |
| AgsI | TTSAA | 3 cut(s) | 128, 304, 748 |
| AjnI | CCWGG | 2 cut(s) | 113, 480 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 494, 526 |
| AluBI | AGCT | 2 cut(s) | 284, 471 |
| AluI | AGCT | 2 cut(s) | 284, 471 |
| Alw21I | GWGCWC | 2 cut(s) | 395, 612 |
| Alw26I | GTCTC | 3 cut(s) | 332, 637, 775 |
| AlwI | GGATC | 3 cut(s) | 83, 408, 472 |
| Ama87I | CYCGRG | 1 cut(s) | 307 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 2 cut(s) | 70, 281 |
| ApoI | RAATTY | 4 cut(s) | 128, 258, 461, 748 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 713 |
| AspS9I | GGNCC | 1 cut(s) | 450 |
| AsuC2I | CCSGG | 1 cut(s) | 506 |
| AsuHPI | GGTGA | 5 cut(s) | 154, 419, 547, 627, 833 |
| AvaI | CYCGRG | 1 cut(s) | 307 |
| AvaII | GGWCC | 1 cut(s) | 450 |
| BaeGI | GKGCMC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 2 cut(s) | 395, 612 |
| BbvI | GCAGC | 2 cut(s) | 82, 293 |
| BccI | CCATC | 5 cut(s) | 28, 214, 328, 404, 419 |
| BceAI | ACGGC | 1 cut(s) | 456 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 11, 45, 255, 289 |
| BciT130I | CCWGG | 2 cut(s) | 115, 482 |
| BclI | TGATCA | 1 cut(s) | 240 |
| BcnI | CCSGG | 1 cut(s) | 506 |
| BcoDI | GTCTC | 3 cut(s) | 332, 637, 775 |
| BfaI | CTAG | 3 cut(s) | 17, 263, 850 |
| BisI | GCNGC | 2 cut(s) | 71, 282 |
| BlsI | GCNGC | 2 cut(s) | 72, 283 |
| BmcAI | AGTACT | 1 cut(s) | 361 |
| Bme1390I | CCNGG | 3 cut(s) | 115, 482, 506 |
| Bme18I | GGWCC | 1 cut(s) | 450 |
| BmeT110I | CYCGRG | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 1 cut(s) | 450 |
| BmrFI | CCNGG | 3 cut(s) | 115, 482, 506 |
| BmsI | GCATC | 2 cut(s) | 205, 587 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 349, 381 |
| BpuMI | CCSGG | 1 cut(s) | 506 |
| BsaHI | GRCGYC | 1 cut(s) | 658 |
| BsaI | GGTCTC | 1 cut(s) | 637 |
| BsaJI | CCNNGG | 2 cut(s) | 481, 652 |
| BsaWI | WCCGGW | 1 cut(s) | 136 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 329, 359, 809, 839 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 511, 512 |
| Bse1I | ACTGG | 1 cut(s) | 633 |
| BseBI | CCWGG | 2 cut(s) | 115, 482 |
| BseDI | CCNNGG | 2 cut(s) | 481, 652 |
| BseGI | GGATG | 2 cut(s) | 39, 504 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 511, 512 |
| BseMII | CTCAG | 2 cut(s) | 597, 819 |
| BseNI | ACTGG | 1 cut(s) | 633 |
| BseRI | GAGGAG | 2 cut(s) | 542, 745 |
| BseSI | GKGCMC | 1 cut(s) | 353 |
| BseXI | GCAGC | 2 cut(s) | 82, 293 |
| BseYI | CCCAGC | 1 cut(s) | 558 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 2 cut(s) | 395, 612 |
| BsiHKCI | CYCGRG | 1 cut(s) | 307 |
| BsiSI | CCGG | 3 cut(s) | 137, 149, 506 |
| BslFI | GGGAC | 1 cut(s) | 817 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 511, 512 |
| BsmAI | GTCTC | 3 cut(s) | 332, 637, 775 |
| BsmBI | CGTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 1 cut(s) | 817 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bso31I | GGTCTC | 1 cut(s) | 637 |
| BsoBI | CYCGRG | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 3 cut(s) | 353, 395, 612 |
| Bsp143I | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| BspACI | CCGC | 2 cut(s) | 73, 562 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 2 cut(s) | 598, 820 |
| BspHI | TCATGA | 1 cut(s) | 211 |
| BspPI | GGATC | 3 cut(s) | 83, 408, 472 |
| BspQI | GCTCTTC | 2 cut(s) | 60, 400 |
| BspTNI | GGTCTC | 1 cut(s) | 637 |
| BsrI | ACTGG | 1 cut(s) | 633 |
| BssECI | CCNNGG | 2 cut(s) | 481, 652 |
| BssMI | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| BssNI | GRCGYC | 1 cut(s) | 658 |
| BssT1I | CCWWGG | 1 cut(s) | 652 |
| Bst2UI | CCWGG | 2 cut(s) | 115, 482 |
| Bst6I | CTCTTC | 4 cut(s) | 60, 400, 552, 699 |
| BstACI | GRCGYC | 1 cut(s) | 658 |
| BstDEI | CTNAG | 3 cut(s) | 606, 639, 828 |
| BstF5I | GGATG | 2 cut(s) | 39, 504 |
| BstKTI | GATC | 5 cut(s) | 78, 243, 272, 403, 480 |
| BstMAI | GTCTC | 3 cut(s) | 332, 637, 775 |
| BstMBI | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 287 |
| BstNI | CCWGG | 2 cut(s) | 115, 482 |
| BstSCI | CCNGG | 3 cut(s) | 113, 480, 504 |
| BstSLI | GKGCMC | 1 cut(s) | 353 |
| BstV1I | GCAGC | 2 cut(s) | 82, 293 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 481, 797 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtgZI | GCGATG | 2 cut(s) | 233, 438 |
| BtsCI | GGATG | 2 cut(s) | 39, 504 |
| CciI | TCATGA | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 1 cut(s) | 450 |
| CseI | GACGC | 1 cut(s) | 647 |
| Csp6I | GTAC | 3 cut(s) | 111, 320, 360 |
| CviAII | CATG | 5 cut(s) | 212, 404, 447, 491, 797 |
| CviJI | RGCY | 8 cut(s) | 148, 284, 290, 471, 489, 689, 743, 849 |
| CviKI_1 | RGCY | 8 cut(s) | 148, 284, 290, 471, 489, 689, 743, 849 |
| CviQI | GTAC | 3 cut(s) | 111, 320, 360 |
| DdeI | CTNAG | 3 cut(s) | 606, 639, 828 |
| DpnI | GATC | 5 cut(s) | 77, 242, 271, 402, 479 |
| DpnII | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Eam1104I | CTCTTC | 4 cut(s) | 60, 400, 552, 699 |
| EarI | CTCTTC | 4 cut(s) | 60, 400, 552, 699 |
| Eco130I | CCWWGG | 1 cut(s) | 652 |
| Eco31I | GGTCTC | 1 cut(s) | 637 |
| Eco47I | GGWCC | 1 cut(s) | 450 |
| Eco88I | CYCGRG | 1 cut(s) | 307 |
| EcoRII | CCWGG | 2 cut(s) | 113, 480 |
| EcoT14I | CCWWGG | 1 cut(s) | 652 |
| EcoT22I | ATGCAT | 1 cut(s) | 798 |
| ErhI | CCWWGG | 1 cut(s) | 652 |
| Esp3I | CGTCTC | 1 cut(s) | 332 |
| FaeI | CATG | 5 cut(s) | 215, 407, 450, 494, 800 |
| FaqI | GGGAC | 1 cut(s) | 817 |
| FatI | CATG | 5 cut(s) | 211, 403, 446, 490, 796 |
| FauNDI | CATATG | 1 cut(s) | 792 |
| FbaI | TGATCA | 1 cut(s) | 240 |
| FblI | GTMKAC | 1 cut(s) | 432 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 282 |
| FokI | GGATG | 2 cut(s) | 46, 511 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 282 |
| FspBI | CTAG | 3 cut(s) | 17, 263, 850 |
| GluI | GCNGC | 2 cut(s) | 71, 282 |
| GsaI | CCCAGC | 1 cut(s) | 562 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HapII | CCGG | 3 cut(s) | 137, 149, 506 |
| HgaI | GACGC | 1 cut(s) | 647 |
| Hin1I | GRCGYC | 1 cut(s) | 658 |
| Hin1II | CATG | 5 cut(s) | 215, 407, 450, 494, 800 |
| HincII | GTYRAC | 1 cut(s) | 433 |
| HindII | GTYRAC | 1 cut(s) | 433 |
| HinfI | GANTC | 8 cut(s) | 13, 106, 429, 541, 592, 755, 824, 830 |
| HpaII | CCGG | 3 cut(s) | 137, 149, 506 |
| HphI | GGTGA | 5 cut(s) | 154, 419, 547, 627, 833 |
| Hpy166II | GTNNAC | 1 cut(s) | 433 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 400, 607, 829 |
| Hpy188III | TCNNGA | 4 cut(s) | 79, 191, 212, 764 |
| Hpy8I | GTNNAC | 1 cut(s) | 433 |
| Hpy99I | CGWCG | 1 cut(s) | 102 |
| HpyAV | CCTTC | 1 cut(s) | 166 |
| HpyCH4IV | ACGT | 1 cut(s) | 602 |
| HpyCH4V | TGCA | 3 cut(s) | 796, 808, 842 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 3 cut(s) | 606, 639, 828 |
| HpySE526I | ACGT | 1 cut(s) | 602 |
| Hsp92I | GRCGYC | 1 cut(s) | 658 |
| Hsp92II | CATG | 5 cut(s) | 215, 407, 450, 494, 800 |
| Ksp22I | TGATCA | 1 cut(s) | 240 |
| Kzo9I | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| LguI | GCTCTTC | 2 cut(s) | 60, 400 |
| LmnI | GCTCC | 1 cut(s) | 476 |
| Lsp1109I | GCAGC | 2 cut(s) | 82, 293 |
| LweI | GCATC | 2 cut(s) | 205, 587 |
| MaeI | CTAG | 3 cut(s) | 17, 263, 850 |
| MaeII | ACGT | 1 cut(s) | 602 |
| MaeIII | GTNAC | 1 cut(s) | 191 |
| MalI | GATC | 5 cut(s) | 77, 242, 271, 402, 479 |
| MboI | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| MboII | GAAGA | 8 cut(s) | 74, 77, 387, 539, 655, 658, 716, 721 |
| MhlI | GDGCHC | 3 cut(s) | 353, 395, 612 |
| MluCI | AATT | 7 cut(s) | 128, 152, 258, 454, 461, 623, 748 |
| MlyI | GAGTC | 7 cut(s) | 7, 438, 550, 601, 764, 833, 839 |
| Mph1103I | ATGCAT | 1 cut(s) | 798 |
| MroXI | GAANNNNTTC | 1 cut(s) | 713 |
| MseI | TTAA | 3 cut(s) | 155, 467, 684 |
| MslI | CAYNNNNRTG | 3 cut(s) | 408, 615, 795 |
| MspA1I | CMGCKG | 2 cut(s) | 73, 562 |
| MspI | CCGG | 3 cut(s) | 137, 149, 506 |
| MspR9I | CCNGG | 3 cut(s) | 115, 482, 506 |
| MvaI | CCWGG | 2 cut(s) | 115, 482 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 287 |
| NciI | CCSGG | 1 cut(s) | 506 |
| NdeI | CATATG | 1 cut(s) | 792 |
| NdeII | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| NlaIII | CATG | 5 cut(s) | 215, 407, 450, 494, 800 |
| NmuCI | GTSAC | 1 cut(s) | 191 |
| NsiI | ATGCAT | 1 cut(s) | 798 |
| PaeR7I | CTCGAG | 1 cut(s) | 307 |
| PagI | TCATGA | 1 cut(s) | 211 |
| PciSI | GCTCTTC | 2 cut(s) | 60, 400 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 106 |
| PdmI | GAANNNNTTC | 1 cut(s) | 713 |
| PfeI | GAWTC | 1 cut(s) | 106 |
| PkrI | GCNGC | 2 cut(s) | 72, 283 |
| PleI | GAGTC | 7 cut(s) | 7, 437, 549, 600, 763, 832, 838 |
| PpsI | GAGTC | 7 cut(s) | 7, 437, 549, 600, 763, 832, 838 |
| Psp6I | CCWGG | 2 cut(s) | 113, 480 |
| PspFI | CCCAGC | 1 cut(s) | 558 |
| PspGI | CCWGG | 2 cut(s) | 113, 480 |
| PspPI | GGNCC | 1 cut(s) | 450 |
| PspXI | VCTCGAGB | 1 cut(s) | 307 |
| RsaI | GTAC | 3 cut(s) | 112, 321, 361 |
| RsaNI | GTAC | 3 cut(s) | 111, 320, 360 |
| RseI | CAYNNNNRTG | 3 cut(s) | 408, 615, 795 |
| SalI | GTCGAC | 1 cut(s) | 431 |
| SapI | GCTCTTC | 2 cut(s) | 60, 400 |
| SaqAI | TTAA | 3 cut(s) | 155, 467, 684 |
| SatI | GCNGC | 2 cut(s) | 71, 282 |
| Sau3AI | GATC | 5 cut(s) | 75, 240, 269, 400, 477 |
| Sau96I | GGNCC | 1 cut(s) | 450 |
| ScaI | AGTACT | 1 cut(s) | 361 |
| SchI | GAGTC | 7 cut(s) | 7, 438, 550, 601, 764, 833, 839 |
| ScrFI | CCNGG | 3 cut(s) | 115, 482, 506 |
| SduI | GDGCHC | 3 cut(s) | 353, 395, 612 |
| SfaNI | GCATC | 2 cut(s) | 205, 587 |
| Sfr274I | CTCGAG | 1 cut(s) | 307 |
| SinI | GGWCC | 1 cut(s) | 450 |
| SlaI | CTCGAG | 1 cut(s) | 307 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 408, 615, 795 |
| SmlI | CTYRAG | 1 cut(s) | 307 |
| SmoI | CTYRAG | 1 cut(s) | 307 |
| Sse9I | AATT | 7 cut(s) | 128, 152, 258, 454, 461, 623, 748 |
| SsiI | CCGC | 2 cut(s) | 73, 562 |
| SspMI | CTAG | 3 cut(s) | 17, 263, 850 |
| StyD4I | CCNGG | 3 cut(s) | 113, 480, 504 |
| StyI | CCWWGG | 1 cut(s) | 652 |
| TaiI | ACGT | 1 cut(s) | 605 |
| TaqI | TCGA | 2 cut(s) | 308, 432 |
| TasI | AATT | 7 cut(s) | 128, 152, 258, 454, 461, 623, 748 |
| TatI | WGTACW | 2 cut(s) | 319, 359 |
| TfiI | GAWTC | 1 cut(s) | 106 |
| Tru1I | TTAA | 3 cut(s) | 155, 467, 684 |
| Tru9I | TTAA | 3 cut(s) | 155, 467, 684 |
| TseFI | GTSAC | 1 cut(s) | 191 |
| TseI | GCWGC | 2 cut(s) | 70, 281 |
| Tsp45I | GTSAC | 1 cut(s) | 191 |
| TspDTI | ATGAA | 2 cut(s) | 200, 515 |
| VpaK11BI | GGWCC | 1 cut(s) | 450 |
| XapI | RAATTY | 4 cut(s) | 128, 258, 461, 748 |
| XhoI | CTCGAG | 1 cut(s) | 307 |
| XmiI | GTMKAC | 1 cut(s) | 432 |
| XmnI | GAANNNNTTC | 1 cut(s) | 713 |
| XspI | CTAG | 3 cut(s) | 17, 263, 850 |
| ZrmI | AGTACT | 1 cut(s) | 361 |
| Zsp2I | ATGCAT | 1 cut(s) | 798 |