Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 269 |
| Acc36I | ACCTGC | 1 cut(s) | 269 |
| AccB1I | GGYRCC | 1 cut(s) | 409 |
| AciI | CCGC | 3 cut(s) | 4, 587, 642 |
| AclWI | GGATC | 4 cut(s) | 514, 531, 573, 662 |
| AcuI | CTGAAG | 2 cut(s) | 376, 729 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 562, 593, 669 |
| AflIII | ACRYGT | 1 cut(s) | 420 |
| AgeI | ACCGGT | 1 cut(s) | 710 |
| AgsI | TTSAA | 6 cut(s) | 102, 161, 223, 272, 299, 418 |
| AluBI | AGCT | 3 cut(s) | 25, 155, 719 |
| AluI | AGCT | 3 cut(s) | 25, 155, 719 |
| AlwI | GGATC | 4 cut(s) | 514, 531, 573, 662 |
| AoxI | GGCC | 2 cut(s) | 195, 553 |
| ApeKI | GCWGC | 4 cut(s) | 149, 152, 314, 785 |
| AsiGI | ACCGGT | 1 cut(s) | 710 |
| AspLEI | GCGC | 4 cut(s) | 52, 142, 319, 481 |
| AspS9I | GGNCC | 2 cut(s) | 196, 341 |
| AsuHPI | GGTGA | 5 cut(s) | 66, 293, 454, 691, 761 |
| AvaII | GGWCC | 1 cut(s) | 341 |
| BanI | GGYRCC | 1 cut(s) | 409 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 374, 406 |
| BbvCI | CCTCAGC | 1 cut(s) | 60 |
| BbvI | GCAGC | 4 cut(s) | 136, 164, 326, 797 |
| BccI | CCATC | 5 cut(s) | 88, 380, 505, 514, 671 |
| BceAI | ACGGC | 2 cut(s) | 492, 574 |
| BciVI | GTATCC | 1 cut(s) | 700 |
| BfaI | CTAG | 3 cut(s) | 143, 207, 716 |
| BfmI | CTRYAG | 2 cut(s) | 150, 783 |
| BfoI | RGCGCY | 2 cut(s) | 53, 482 |
| BfuAI | ACCTGC | 1 cut(s) | 269 |
| BfuI | GTATCC | 1 cut(s) | 700 |
| BisI | GCNGC | 4 cut(s) | 150, 153, 315, 786 |
| BlsI | GCNGC | 4 cut(s) | 151, 154, 316, 787 |
| Bme18I | GGWCC | 1 cut(s) | 341 |
| BmgT120I | GGNCC | 2 cut(s) | 196, 341 |
| BmiI | GGNNCC | 3 cut(s) | 198, 342, 411 |
| BmrI | ACTGGG | 1 cut(s) | 700 |
| BmuI | ACTGGG | 1 cut(s) | 700 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 14, 46, 56, 88 |
| BpmI | CTGGAG | 1 cut(s) | 66 |
| Bpu10I | CCTNAGC | 1 cut(s) | 60 |
| Bsa29I | ATCGAT | 2 cut(s) | 509, 666 |
| BsaJI | CCNNGG | 3 cut(s) | 132, 344, 616 |
| BsaWI | WCCGGW | 1 cut(s) | 710 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 562, 593, 669 |
| Bse118I | RCCGGY | 1 cut(s) | 710 |
| Bse1I | ACTGG | 2 cut(s) | 656, 695 |
| BseCI | ATCGAT | 2 cut(s) | 509, 666 |
| BseDI | CCNNGG | 3 cut(s) | 132, 344, 616 |
| BseGI | GGATG | 2 cut(s) | 128, 525 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 562, 593, 669 |
| BseMII | CTCAG | 2 cut(s) | 51, 265 |
| BseNI | ACTGG | 2 cut(s) | 656, 695 |
| BseRI | GAGGAG | 2 cut(s) | 77, 419 |
| BseXI | GCAGC | 4 cut(s) | 136, 164, 326, 797 |
| BseYI | CCCAGC | 1 cut(s) | 767 |
| Bsh1285I | CGRYCG | 1 cut(s) | 670 |
| BshFI | GGCC | 2 cut(s) | 197, 555 |
| BshNI | GGYRCC | 1 cut(s) | 409 |
| BshTI | ACCGGT | 1 cut(s) | 710 |
| BshVI | ATCGAT | 2 cut(s) | 509, 666 |
| BsiEI | CGRYCG | 1 cut(s) | 670 |
| BsiSI | CCGG | 1 cut(s) | 711 |
| BslFI | GGGAC | 2 cut(s) | 462, 645 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 562, 593, 669 |
| BsmFI | GGGAC | 2 cut(s) | 462, 645 |
| BsnI | GGCC | 2 cut(s) | 197, 555 |
| Bsp1286I | GDGCHC | 1 cut(s) | 697 |
| Bsp143I | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| Bsp19I | CCATGG | 1 cut(s) | 616 |
| BspACI | CCGC | 3 cut(s) | 4, 587, 642 |
| BspANI | GGCC | 2 cut(s) | 197, 555 |
| BspCNI | CTCAG | 2 cut(s) | 52, 264 |
| BspDI | ATCGAT | 2 cut(s) | 509, 666 |
| BspLI | GGNNCC | 3 cut(s) | 198, 342, 411 |
| BspMAI | CTGCAG | 2 cut(s) | 154, 787 |
| BspMI | ACCTGC | 1 cut(s) | 269 |
| BspPI | GGATC | 4 cut(s) | 514, 531, 573, 662 |
| BspT107I | GGYRCC | 1 cut(s) | 409 |
| BsrFI | RCCGGY | 1 cut(s) | 710 |
| BsrI | ACTGG | 2 cut(s) | 656, 695 |
| BssAI | RCCGGY | 1 cut(s) | 710 |
| BssECI | CCNNGG | 3 cut(s) | 132, 344, 616 |
| BssMI | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| BssT1I | CCWWGG | 2 cut(s) | 344, 616 |
| BstC8I | GCNNGC | 1 cut(s) | 483 |
| BstDEI | CTNAG | 2 cut(s) | 60, 251 |
| BstDSI | CCRYGG | 2 cut(s) | 132, 616 |
| BstF5I | GGATG | 2 cut(s) | 128, 525 |
| BstH2I | RGCGCY | 2 cut(s) | 53, 482 |
| BstHHI | GCGC | 4 cut(s) | 52, 142, 319, 481 |
| BstKTI | GATC | 8 cut(s) | 257, 509, 526, 550, 568, 657, 670, 798 |
| BstMBI | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| BstMCI | CGRYCG | 1 cut(s) | 670 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 146, 764 |
| BstNSI | RCATGY | 1 cut(s) | 424 |
| BstSFI | CTRYAG | 2 cut(s) | 150, 783 |
| BstV1I | GCAGC | 4 cut(s) | 136, 164, 326, 797 |
| BstX2I | RGATCY | 1 cut(s) | 654 |
| BstYI | RGATCY | 1 cut(s) | 654 |
| Bsu15I | ATCGAT | 2 cut(s) | 509, 666 |
| BsuI | GTATCC | 1 cut(s) | 700 |
| BsuRI | GGCC | 2 cut(s) | 197, 555 |
| BsuTUI | ATCGAT | 2 cut(s) | 509, 666 |
| BtgI | CCRYGG | 2 cut(s) | 132, 616 |
| BtsCI | GGATG | 2 cut(s) | 128, 525 |
| BveI | ACCTGC | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 1 cut(s) | 483 |
| CfoI | GCGC | 4 cut(s) | 52, 142, 319, 481 |
| Cfr10I | RCCGGY | 1 cut(s) | 710 |
| Cfr13I | GGNCC | 2 cut(s) | 196, 341 |
| ClaI | ATCGAT | 2 cut(s) | 509, 666 |
| CseI | GACGC | 2 cut(s) | 284, 486 |
| CspAI | ACCGGT | 1 cut(s) | 710 |
| CviAII | CATG | 5 cut(s) | 19, 335, 421, 432, 617 |
| DdeI | CTNAG | 2 cut(s) | 60, 251 |
| DpnI | GATC | 8 cut(s) | 256, 508, 525, 549, 567, 656, 669, 797 |
| DpnII | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| DraI | TTTAAA | 1 cut(s) | 807 |
| EciI | GGCGGA | 1 cut(s) | 576 |
| Eco130I | CCWWGG | 2 cut(s) | 344, 616 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 1 cut(s) | 341 |
| Eco57I | CTGAAG | 2 cut(s) | 376, 729 |
| EcoO109I | RGGNCCY | 1 cut(s) | 341 |
| EcoT14I | CCWWGG | 2 cut(s) | 344, 616 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| ErhI | CCWWGG | 2 cut(s) | 344, 616 |
| FaeI | CATG | 5 cut(s) | 22, 338, 424, 435, 620 |
| FaqI | GGGAC | 2 cut(s) | 462, 645 |
| FatI | CATG | 5 cut(s) | 18, 334, 420, 431, 616 |
| FauI | CCCGC | 1 cut(s) | 635 |
| Fnu4HI | GCNGC | 4 cut(s) | 150, 153, 315, 786 |
| FokI | GGATG | 2 cut(s) | 115, 532 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 4 cut(s) | 150, 153, 315, 786 |
| FspBI | CTAG | 3 cut(s) | 143, 207, 716 |
| GlaI | GCGC | 4 cut(s) | 51, 141, 318, 480 |
| GluI | GCNGC | 4 cut(s) | 150, 153, 315, 786 |
| GsaI | CCCAGC | 1 cut(s) | 771 |
| GsuI | CTGGAG | 1 cut(s) | 66 |
| HaeII | RGCGCY | 2 cut(s) | 53, 482 |
| HaeIII | GGCC | 2 cut(s) | 197, 555 |
| HapII | CCGG | 1 cut(s) | 711 |
| HgaI | GACGC | 2 cut(s) | 284, 486 |
| HhaI | GCGC | 4 cut(s) | 52, 142, 319, 481 |
| Hin1II | CATG | 5 cut(s) | 22, 338, 424, 435, 620 |
| Hin6I | GCGC | 4 cut(s) | 50, 140, 317, 479 |
| HinP1I | GCGC | 4 cut(s) | 50, 140, 317, 479 |
| HinfI | GANTC | 5 cut(s) | 98, 109, 119, 125, 623 |
| HpaII | CCGG | 1 cut(s) | 711 |
| HphI | GGTGA | 5 cut(s) | 66, 293, 454, 691, 761 |
| Hpy166II | GTNNAC | 1 cut(s) | 792 |
| Hpy188I | TCNGA | 4 cut(s) | 84, 114, 124, 254 |
| Hpy188III | TCNNGA | 7 cut(s) | 10, 45, 161, 272, 517, 569, 793 |
| Hpy8I | GTNNAC | 1 cut(s) | 792 |
| Hpy99I | CGWCG | 1 cut(s) | 595 |
| HpyAV | CCTTC | 5 cut(s) | 79, 439, 676, 724, 746 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 785 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 146, 764 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 251 |
| Hsp92II | CATG | 5 cut(s) | 22, 338, 424, 435, 620 |
| HspAI | GCGC | 4 cut(s) | 50, 140, 317, 479 |
| Kzo9I | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| LmnI | GCTCC | 4 cut(s) | 22, 47, 494, 645 |
| Lsp1109I | GCAGC | 4 cut(s) | 136, 164, 326, 797 |
| MaeI | CTAG | 3 cut(s) | 143, 207, 716 |
| MaeIII | GTNAC | 1 cut(s) | 608 |
| MalI | GATC | 8 cut(s) | 256, 508, 525, 549, 567, 656, 669, 797 |
| MboI | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| MboII | GAAGA | 1 cut(s) | 735 |
| MflI | RGATCY | 1 cut(s) | 654 |
| MhlI | GDGCHC | 1 cut(s) | 697 |
| MluCI | AATT | 2 cut(s) | 299, 598 |
| MlyI | GAGTC | 3 cut(s) | 103, 119, 632 |
| MmeI | TCCRAC | 2 cut(s) | 163, 405 |
| MseI | TTAA | 2 cut(s) | 264, 806 |
| MslI | CAYNNNNRTG | 1 cut(s) | 324 |
| MspI | CCGG | 1 cut(s) | 711 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 146, 764 |
| NcoI | CCATGG | 1 cut(s) | 616 |
| NdeII | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| NlaIII | CATG | 5 cut(s) | 22, 338, 424, 435, 620 |
| NlaIV | GGNNCC | 3 cut(s) | 198, 342, 411 |
| NspI | RCATGY | 1 cut(s) | 424 |
| PaqCI | CACCTGC | 1 cut(s) | 269 |
| PciI | ACATGT | 1 cut(s) | 420 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 547, 645 |
| PfeI | GAWTC | 2 cut(s) | 98, 119 |
| PinAI | ACCGGT | 1 cut(s) | 710 |
| PkrI | GCNGC | 4 cut(s) | 151, 154, 316, 787 |
| Ple19I | CGATCG | 1 cut(s) | 670 |
| PleI | GAGTC | 3 cut(s) | 103, 119, 631 |
| PpsI | GAGTC | 3 cut(s) | 103, 119, 631 |
| PpuMI | RGGWCCY | 1 cut(s) | 341 |
| PscI | ACATGT | 1 cut(s) | 420 |
| Psp5II | RGGWCCY | 1 cut(s) | 341 |
| PspFI | CCCAGC | 1 cut(s) | 767 |
| PspN4I | GGNNCC | 3 cut(s) | 198, 342, 411 |
| PspPI | GGNCC | 2 cut(s) | 196, 341 |
| PspPPI | RGGWCCY | 1 cut(s) | 341 |
| PstI | CTGCAG | 2 cut(s) | 154, 787 |
| PsuI | RGATCY | 1 cut(s) | 654 |
| PvuI | CGATCG | 1 cut(s) | 670 |
| RseI | CAYNNNNRTG | 1 cut(s) | 324 |
| SaqAI | TTAA | 2 cut(s) | 264, 806 |
| SatI | GCNGC | 4 cut(s) | 150, 153, 315, 786 |
| Sau3AI | GATC | 8 cut(s) | 254, 506, 523, 547, 565, 654, 667, 795 |
| Sau96I | GGNCC | 2 cut(s) | 196, 341 |
| SchI | GAGTC | 3 cut(s) | 103, 119, 632 |
| SduI | GDGCHC | 1 cut(s) | 697 |
| SetI | ASST | 9 cut(s) | 27, 74, 79, 157, 283, 411, 721, 751, 778 |
| SfcI | CTRYAG | 2 cut(s) | 150, 783 |
| SinI | GGWCC | 1 cut(s) | 341 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 324 |
| Sse9I | AATT | 2 cut(s) | 299, 598 |
| SsiI | CCGC | 3 cut(s) | 4, 587, 642 |
| SspI | AATATT | 1 cut(s) | 268 |
| SspMI | CTAG | 3 cut(s) | 143, 207, 716 |
| StyI | CCWWGG | 2 cut(s) | 344, 616 |
| TaqI | TCGA | 4 cut(s) | 509, 550, 580, 666 |
| TasI | AATT | 2 cut(s) | 299, 598 |
| TfiI | GAWTC | 2 cut(s) | 98, 119 |
| Tru1I | TTAA | 2 cut(s) | 264, 806 |
| Tru9I | TTAA | 2 cut(s) | 264, 806 |
| TseI | GCWGC | 4 cut(s) | 149, 152, 314, 785 |
| TspDTI | ATGAA | 1 cut(s) | 324 |
| TspGWI | ACGGA | 4 cut(s) | 121, 444, 556, 596 |
| VpaK11BI | GGWCC | 1 cut(s) | 341 |
| XceI | RCATGY | 1 cut(s) | 424 |
| XspI | CTAG | 3 cut(s) | 143, 207, 716 |