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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 565 |
| Acc36I | ACCTGC | 1 cut(s) | 565 |
| Acc65I | GGTACC | 1 cut(s) | 164 |
| AccB1I | GGYRCC | 1 cut(s) | 164 |
| AccI | GTMKAC | 1 cut(s) | 690 |
| AciI | CCGC | 5 cut(s) | 4, 59, 67, 106, 144 |
| AclWI | GGATC | 5 cut(s) | 97, 110, 429, 660, 673 |
| AcoI | YGGCCR | 1 cut(s) | 656 |
| AcsI | RAATTY | 2 cut(s) | 133, 647 |
| AcuI | CTGAAG | 1 cut(s) | 728 |
| AcvI | CACGTG | 1 cut(s) | 719 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 203, 371, 854 |
| AflIII | ACRYGT | 1 cut(s) | 718 |
| AgsI | TTSAA | 4 cut(s) | 343, 761, 818, 834 |
| AjnI | CCWGG | 2 cut(s) | 463, 926 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 186, 218 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 444, 476 |
| AluBI | AGCT | 3 cut(s) | 251, 764, 908 |
| AluI | AGCT | 3 cut(s) | 251, 764, 908 |
| Alw21I | GWGCWC | 1 cut(s) | 398 |
| Alw26I | GTCTC | 2 cut(s) | 49, 245 |
| AlwI | GGATC | 5 cut(s) | 97, 110, 429, 660, 673 |
| Ama87I | CYCGRG | 1 cut(s) | 95 |
| AoxI | GGCC | 3 cut(s) | 42, 373, 656 |
| ApoI | RAATTY | 2 cut(s) | 133, 647 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 743 |
| Asp718I | GGTACC | 1 cut(s) | 164 |
| AspA2I | CCTAGG | 1 cut(s) | 197 |
| AspLEI | GCGC | 1 cut(s) | 484 |
| AspS9I | GGNCC | 2 cut(s) | 374, 703 |
| AsuC2I | CCSGG | 1 cut(s) | 486 |
| AsuHPI | GGTGA | 4 cut(s) | 188, 403, 488, 835 |
| AvaI | CYCGRG | 1 cut(s) | 95 |
| AvaII | GGWCC | 1 cut(s) | 703 |
| AvrII | CCTAGG | 1 cut(s) | 197 |
| AxyI | CCTNAGG | 2 cut(s) | 699, 849 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 156, 189 |
| BamHI | GGATCC | 2 cut(s) | 102, 665 |
| BanI | GGYRCC | 1 cut(s) | 164 |
| BanII | GRGCYC | 1 cut(s) | 588 |
| BbrPI | CACGTG | 1 cut(s) | 719 |
| BbsI | GAAGAC | 2 cut(s) | 590, 716 |
| Bbv12I | GWGCWC | 1 cut(s) | 398 |
| BccI | CCATC | 5 cut(s) | 176, 443, 467, 566, 571 |
| BceAI | ACGGC | 1 cut(s) | 671 |
| BciT130I | CCWGG | 2 cut(s) | 465, 928 |
| BcnI | CCSGG | 1 cut(s) | 486 |
| BcoDI | GTCTC | 2 cut(s) | 49, 245 |
| BfaI | CTAG | 3 cut(s) | 183, 198, 905 |
| BfuAI | ACCTGC | 1 cut(s) | 565 |
| BlnI | CCTAGG | 1 cut(s) | 197 |
| BlpI | GCTNAGC | 1 cut(s) | 23 |
| Bme1390I | CCNGG | 3 cut(s) | 465, 486, 928 |
| Bme18I | GGWCC | 1 cut(s) | 703 |
| BmeT110I | CYCGRG | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 2 cut(s) | 374, 703 |
| BmiI | GGNNCC | 5 cut(s) | 104, 166, 363, 462, 667 |
| BmrFI | CCNGG | 3 cut(s) | 465, 486, 928 |
| BmsI | GCATC | 3 cut(s) | 280, 469, 772 |
| BpiI | GAAGAC | 2 cut(s) | 590, 716 |
| Bpu10I | CCTNAGC | 1 cut(s) | 765 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 23 |
| BpuMI | CCSGG | 1 cut(s) | 486 |
| BsaAI | YACGTR | 1 cut(s) | 719 |
| BsaI | GGTCTC | 1 cut(s) | 49 |
| BsaJI | CCNNGG | 1 cut(s) | 197 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 203, 371, 854 |
| Bse1I | ACTGG | 2 cut(s) | 23, 156 |
| Bse21I | CCTNAGG | 2 cut(s) | 699, 849 |
| BseBI | CCWGG | 2 cut(s) | 465, 928 |
| BseDI | CCNNGG | 1 cut(s) | 197 |
| BseGI | GGATG | 3 cut(s) | 160, 577, 582 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 203, 371, 854 |
| BseMII | CTCAG | 6 cut(s) | 14, 617, 647, 690, 809, 840 |
| BseNI | ACTGG | 2 cut(s) | 23, 156 |
| BseRI | GAGGAG | 2 cut(s) | 44, 621 |
| BseYI | CCCAGC | 1 cut(s) | 251 |
| BshFI | GGCC | 3 cut(s) | 44, 375, 658 |
| BshNI | GGYRCC | 1 cut(s) | 164 |
| BsiHKAI | GWGCWC | 1 cut(s) | 398 |
| BsiHKCI | CYCGRG | 1 cut(s) | 95 |
| BsiSI | CCGG | 1 cut(s) | 485 |
| BslFI | GGGAC | 2 cut(s) | 503, 790 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 203, 371, 854 |
| BsmAI | GTCTC | 2 cut(s) | 49, 245 |
| BsmFI | GGGAC | 2 cut(s) | 503, 790 |
| BsmI | GAATGC | 2 cut(s) | 293, 329 |
| BsnI | GGCC | 3 cut(s) | 44, 375, 658 |
| Bso31I | GGTCTC | 1 cut(s) | 49 |
| BsoBI | CYCGRG | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 2 cut(s) | 398, 588 |
| Bsp143I | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 23 |
| BspACI | CCGC | 5 cut(s) | 4, 59, 67, 106, 144 |
| BspANI | GGCC | 3 cut(s) | 44, 375, 658 |
| BspCNI | CTCAG | 6 cut(s) | 15, 616, 646, 691, 808, 841 |
| BspLI | GGNNCC | 5 cut(s) | 104, 166, 363, 462, 667 |
| BspMI | ACCTGC | 1 cut(s) | 565 |
| BspPI | GGATC | 5 cut(s) | 97, 110, 429, 660, 673 |
| BspQI | GCTCTTC | 1 cut(s) | 876 |
| BspT107I | GGYRCC | 1 cut(s) | 164 |
| BspTNI | GGTCTC | 1 cut(s) | 49 |
| BsrI | ACTGG | 2 cut(s) | 23, 156 |
| BssECI | CCNNGG | 1 cut(s) | 197 |
| BssMI | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| BssT1I | CCWWGG | 1 cut(s) | 197 |
| Bst2UI | CCWGG | 2 cut(s) | 465, 928 |
| Bst4CI | ACNGT | 3 cut(s) | 239, 400, 695 |
| Bst6I | CTCTTC | 2 cut(s) | 813, 876 |
| BstBAI | YACGTR | 1 cut(s) | 719 |
| BstC8I | GCNNGC | 2 cut(s) | 439, 549 |
| BstDEI | CTNAG | 8 cut(s) | 23, 82, 603, 633, 699, 765, 795, 849 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 369 |
| BstF5I | GGATG | 3 cut(s) | 160, 577, 582 |
| BstHHI | GCGC | 1 cut(s) | 484 |
| BstKTI | GATC | 5 cut(s) | 78, 105, 424, 509, 668 |
| BstMAI | GTCTC | 2 cut(s) | 49, 245 |
| BstMBI | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 257, 266, 557 |
| BstNI | CCWGG | 2 cut(s) | 465, 928 |
| BstSCI | CCNGG | 3 cut(s) | 463, 484, 926 |
| BstV2I | GAAGAC | 2 cut(s) | 590, 716 |
| BstX2I | RGATCY | 2 cut(s) | 102, 665 |
| BstYI | RGATCY | 2 cut(s) | 102, 665 |
| Bsu36I | CCTNAGG | 2 cut(s) | 699, 849 |
| BsuRI | GGCC | 3 cut(s) | 44, 375, 658 |
| BtsCI | GGATG | 3 cut(s) | 160, 577, 582 |
| BtsIMutI | CAGTG | 3 cut(s) | 149, 396, 499 |
| BveI | ACCTGC | 1 cut(s) | 565 |
| Cac8I | GCNNGC | 2 cut(s) | 439, 549 |
| CfoI | GCGC | 1 cut(s) | 484 |
| Cfr13I | GGNCC | 2 cut(s) | 374, 703 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CviAII | CATG | 1 cut(s) | 457 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 8 cut(s) | 23, 82, 603, 633, 699, 765, 795, 849 |
| DpnI | GATC | 5 cut(s) | 77, 104, 423, 508, 667 |
| DpnII | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| EaeI | YGGCCR | 1 cut(s) | 656 |
| Eam1104I | CTCTTC | 2 cut(s) | 813, 876 |
| EarI | CTCTTC | 2 cut(s) | 813, 876 |
| EciI | GGCGGA | 1 cut(s) | 95 |
| Eco130I | CCWWGG | 1 cut(s) | 197 |
| Eco147I | AGGCCT | 1 cut(s) | 44 |
| Eco24I | GRGCYC | 1 cut(s) | 588 |
| Eco31I | GGTCTC | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 703 |
| Eco57I | CTGAAG | 1 cut(s) | 728 |
| Eco72I | CACGTG | 1 cut(s) | 719 |
| Eco81I | CCTNAGG | 2 cut(s) | 699, 849 |
| Eco88I | CYCGRG | 1 cut(s) | 95 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 369 |
| EcoO109I | RGGNCCY | 1 cut(s) | 703 |
| EcoRII | CCWGG | 2 cut(s) | 463, 926 |
| EcoT14I | CCWWGG | 1 cut(s) | 197 |
| EcoT22I | ATGCAT | 1 cut(s) | 295 |
| EcoT38I | GRGCYC | 1 cut(s) | 588 |
| ErhI | CCWWGG | 1 cut(s) | 197 |
| FaeI | CATG | 1 cut(s) | 460 |
| FaiI | YATR | 5 cut(s) | 458, 470, 500, 773, 804 |
| FaqI | GGGAC | 2 cut(s) | 503, 790 |
| FatI | CATG | 1 cut(s) | 456 |
| FauI | CCCGC | 1 cut(s) | 151 |
| FblI | GTMKAC | 1 cut(s) | 690 |
| FokI | GGATG | 3 cut(s) | 167, 584, 589 |
| FriOI | GRGCYC | 1 cut(s) | 588 |
| FspBI | CTAG | 3 cut(s) | 183, 198, 905 |
| GlaI | GCGC | 1 cut(s) | 483 |
| GsaI | CCCAGC | 1 cut(s) | 255 |
| HaeIII | GGCC | 3 cut(s) | 44, 375, 658 |
| HapII | CCGG | 1 cut(s) | 485 |
| HhaI | GCGC | 1 cut(s) | 484 |
| Hin1II | CATG | 1 cut(s) | 460 |
| Hin6I | GCGC | 1 cut(s) | 482 |
| HinP1I | GCGC | 1 cut(s) | 482 |
| HincII | GTYRAC | 1 cut(s) | 691 |
| HindII | GTYRAC | 1 cut(s) | 691 |
| HinfI | GANTC | 4 cut(s) | 11, 453, 917, 923 |
| HpaII | CCGG | 1 cut(s) | 485 |
| HphI | GGTGA | 4 cut(s) | 188, 403, 488, 835 |
| Hpy166II | GTNNAC | 1 cut(s) | 691 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 193, 606, 636, 922 |
| Hpy188III | TCNNGA | 4 cut(s) | 563, 698, 706, 797 |
| Hpy8I | GTNNAC | 1 cut(s) | 691 |
| HpyAV | CCTTC | 4 cut(s) | 34, 119, 718, 801 |
| HpyCH4III | ACNGT | 3 cut(s) | 239, 400, 695 |
| HpyCH4IV | ACGT | 1 cut(s) | 718 |
| HpyCH4V | TGCA | 3 cut(s) | 260, 293, 441 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 257, 266, 557 |
| HpyF3I | CTNAG | 8 cut(s) | 23, 82, 603, 633, 699, 765, 795, 849 |
| HpySE526I | ACGT | 1 cut(s) | 718 |
| Hsp92II | CATG | 1 cut(s) | 460 |
| HspAI | GCGC | 1 cut(s) | 482 |
| KpnI | GGTACC | 1 cut(s) | 168 |
| Kzo9I | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| LguI | GCTCTTC | 1 cut(s) | 876 |
| LmnI | GCTCC | 2 cut(s) | 367, 799 |
| LweI | GCATC | 3 cut(s) | 280, 469, 772 |
| MaeI | CTAG | 3 cut(s) | 183, 198, 905 |
| MaeII | ACGT | 1 cut(s) | 718 |
| MaeIII | GTNAC | 1 cut(s) | 233 |
| MalI | GATC | 5 cut(s) | 77, 104, 423, 508, 667 |
| MboI | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| MboII | GAAGA | 9 cut(s) | 131, 289, 355, 550, 590, 649, 721, 830, 893 |
| MflI | RGATCY | 2 cut(s) | 102, 665 |
| MhlI | GDGCHC | 2 cut(s) | 398, 588 |
| MluCI | AATT | 5 cut(s) | 133, 158, 313, 355, 647 |
| MlyI | GAGTC | 2 cut(s) | 20, 926 |
| Mph1103I | ATGCAT | 1 cut(s) | 295 |
| MroXI | GAANNNNTTC | 1 cut(s) | 743 |
| MseI | TTAA | 2 cut(s) | 354, 729 |
| MspA1I | CMGCKG | 1 cut(s) | 251 |
| MspI | CCGG | 1 cut(s) | 485 |
| MspR9I | CCNGG | 3 cut(s) | 465, 486, 928 |
| Mva1269I | GAATGC | 2 cut(s) | 293, 329 |
| MvaI | CCWGG | 2 cut(s) | 465, 928 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 257, 266, 557 |
| NciI | CCSGG | 1 cut(s) | 486 |
| NdeII | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| NlaIII | CATG | 1 cut(s) | 460 |
| NlaIV | GGNNCC | 5 cut(s) | 104, 166, 363, 462, 667 |
| NsiI | ATGCAT | 1 cut(s) | 295 |
| PaeR7I | CTCGAG | 1 cut(s) | 95 |
| PaqCI | CACCTGC | 1 cut(s) | 565 |
| PceI | AGGCCT | 1 cut(s) | 44 |
| PciSI | GCTCTTC | 1 cut(s) | 876 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PctI | GAATGC | 2 cut(s) | 293, 329 |
| PdmI | GAANNNNTTC | 1 cut(s) | 743 |
| PfeI | GAWTC | 2 cut(s) | 453, 923 |
| PleI | GAGTC | 2 cut(s) | 19, 925 |
| PmaCI | CACGTG | 1 cut(s) | 719 |
| PmlI | CACGTG | 1 cut(s) | 719 |
| PpsI | GAGTC | 2 cut(s) | 19, 925 |
| Ppu21I | YACGTR | 1 cut(s) | 719 |
| PpuMI | RGGWCCY | 1 cut(s) | 703 |
| Psp5II | RGGWCCY | 1 cut(s) | 703 |
| Psp6I | CCWGG | 2 cut(s) | 463, 926 |
| PspCI | CACGTG | 1 cut(s) | 719 |
| PspFI | CCCAGC | 1 cut(s) | 251 |
| PspGI | CCWGG | 2 cut(s) | 463, 926 |
| PspN4I | GGNNCC | 5 cut(s) | 104, 166, 363, 462, 667 |
| PspPI | GGNCC | 2 cut(s) | 374, 703 |
| PspPPI | RGGWCCY | 1 cut(s) | 703 |
| PspXI | VCTCGAGB | 1 cut(s) | 95 |
| PsuI | RGATCY | 2 cut(s) | 102, 665 |
| PvuII | CAGCTG | 1 cut(s) | 251 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| SalI | GTCGAC | 1 cut(s) | 689 |
| SapI | GCTCTTC | 1 cut(s) | 876 |
| SaqAI | TTAA | 2 cut(s) | 354, 729 |
| Sau3AI | GATC | 5 cut(s) | 75, 102, 421, 506, 665 |
| Sau96I | GGNCC | 2 cut(s) | 374, 703 |
| SchI | GAGTC | 2 cut(s) | 20, 926 |
| ScrFI | CCNGG | 3 cut(s) | 465, 486, 928 |
| SduI | GDGCHC | 2 cut(s) | 398, 588 |
| SfaNI | GCATC | 3 cut(s) | 280, 469, 772 |
| Sfr274I | CTCGAG | 1 cut(s) | 95 |
| SinI | GGWCC | 1 cut(s) | 703 |
| SlaI | CTCGAG | 1 cut(s) | 95 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 5 cut(s) | 133, 158, 313, 355, 647 |
| SseBI | AGGCCT | 1 cut(s) | 44 |
| SsiI | CCGC | 5 cut(s) | 4, 59, 67, 106, 144 |
| SspMI | CTAG | 3 cut(s) | 183, 198, 905 |
| StuI | AGGCCT | 1 cut(s) | 44 |
| StyD4I | CCNGG | 3 cut(s) | 463, 484, 926 |
| StyI | CCWWGG | 1 cut(s) | 197 |
| TaaI | ACNGT | 3 cut(s) | 239, 400, 695 |
| TaiI | ACGT | 1 cut(s) | 721 |
| TaqI | TCGA | 2 cut(s) | 96, 690 |
| TaqII | GACCGA | 1 cut(s) | 323 |
| TasI | AATT | 5 cut(s) | 133, 158, 313, 355, 647 |
| TfiI | GAWTC | 2 cut(s) | 453, 923 |
| Tru1I | TTAA | 2 cut(s) | 354, 729 |
| Tru9I | TTAA | 2 cut(s) | 354, 729 |
| TscAI | CASTG | 3 cut(s) | 156, 403, 499 |
| TspDTI | ATGAA | 3 cut(s) | 171, 418, 445 |
| TspGWI | ACGGA | 1 cut(s) | 102 |
| TspRI | CASTG | 3 cut(s) | 156, 403, 499 |
| VpaK11BI | GGWCC | 1 cut(s) | 703 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 369 |
| XapI | RAATTY | 2 cut(s) | 133, 647 |
| XhoI | CTCGAG | 1 cut(s) | 95 |
| XmaJI | CCTAGG | 1 cut(s) | 197 |
| XmiI | GTMKAC | 1 cut(s) | 690 |
| XmnI | GAANNNNTTC | 1 cut(s) | 743 |
| XspI | CTAG | 3 cut(s) | 183, 198, 905 |
| Zsp2I | ATGCAT | 1 cut(s) | 295 |