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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 232 |
| AciI | CCGC | 3 cut(s) | 178, 230, 470 |
| AclWI | GGATC | 2 cut(s) | 351, 414 |
| AcoI | YGGCCR | 1 cut(s) | 467 |
| AcsI | RAATTY | 1 cut(s) | 194 |
| AgsI | TTSAA | 4 cut(s) | 51, 218, 241, 253 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 271 |
| AluBI | AGCT | 5 cut(s) | 92, 130, 188, 497, 521 |
| AluI | AGCT | 5 cut(s) | 92, 130, 188, 497, 521 |
| Alw21I | GWGCWC | 3 cut(s) | 94, 132, 190 |
| AlwI | GGATC | 2 cut(s) | 351, 414 |
| AoxI | GGCC | 1 cut(s) | 467 |
| ApeKI | GCWGC | 1 cut(s) | 518 |
| ApoI | RAATTY | 1 cut(s) | 194 |
| AsuC2I | CCSGG | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 125 |
| BanII | GRGCYC | 3 cut(s) | 94, 132, 190 |
| BbsI | GAAGAC | 1 cut(s) | 342 |
| Bbv12I | GWGCWC | 3 cut(s) | 94, 132, 190 |
| BccI | CCATC | 1 cut(s) | 69 |
| BcnI | CCSGG | 1 cut(s) | 341 |
| BfaI | CTAG | 1 cut(s) | 473 |
| BfmI | CTRYAG | 1 cut(s) | 85 |
| BisI | GCNGC | 3 cut(s) | 178, 470, 519 |
| BlsI | GCNGC | 3 cut(s) | 179, 471, 520 |
| Bme1390I | CCNGG | 1 cut(s) | 341 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 271 |
| BmrFI | CCNGG | 1 cut(s) | 341 |
| BmsI | GCATC | 1 cut(s) | 311 |
| BpiI | GAAGAC | 1 cut(s) | 342 |
| BpuMI | CCSGG | 1 cut(s) | 341 |
| BsaWI | WCCGGW | 1 cut(s) | 509 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 210, 240 |
| Bse1I | ACTGG | 2 cut(s) | 118, 123 |
| Bse3DI | GCAATG | 2 cut(s) | 443, 470 |
| BseGI | GGATG | 2 cut(s) | 45, 326 |
| BseMI | GCAATG | 2 cut(s) | 443, 470 |
| BseNI | ACTGG | 2 cut(s) | 118, 123 |
| BseRI | GAGGAG | 1 cut(s) | 84 |
| BseYI | CCCAGC | 1 cut(s) | 521 |
| Bsh1236I | CGCG | 1 cut(s) | 232 |
| BshFI | GGCC | 1 cut(s) | 469 |
| BsiHKAI | GWGCWC | 3 cut(s) | 94, 132, 190 |
| BsiSI | CCGG | 3 cut(s) | 341, 460, 510 |
| BsnI | GGCC | 1 cut(s) | 469 |
| Bsp1286I | GDGCHC | 3 cut(s) | 94, 132, 190 |
| Bsp143I | GATC | 3 cut(s) | 223, 343, 406 |
| BspACI | CCGC | 3 cut(s) | 178, 230, 470 |
| BspANI | GGCC | 1 cut(s) | 469 |
| BspFNI | CGCG | 1 cut(s) | 232 |
| BspPI | GGATC | 2 cut(s) | 351, 414 |
| BsrDI | GCAATG | 2 cut(s) | 443, 470 |
| BsrI | ACTGG | 2 cut(s) | 118, 123 |
| BssMI | GATC | 3 cut(s) | 223, 343, 406 |
| Bst4CI | ACNGT | 3 cut(s) | 46, 113, 269 |
| Bst6I | CTCTTC | 1 cut(s) | 263 |
| BstEII | GGTNACC | 1 cut(s) | 113 |
| BstF5I | GGATG | 2 cut(s) | 45, 326 |
| BstFNI | CGCG | 1 cut(s) | 232 |
| BstKTI | GATC | 3 cut(s) | 226, 346, 409 |
| BstMBI | GATC | 3 cut(s) | 223, 343, 406 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 469 |
| BstPI | GGTNACC | 1 cut(s) | 113 |
| BstSCI | CCNGG | 1 cut(s) | 339 |
| BstSFI | CTRYAG | 1 cut(s) | 85 |
| BstUI | CGCG | 1 cut(s) | 232 |
| BstV2I | GAAGAC | 1 cut(s) | 342 |
| BsuRI | GGCC | 1 cut(s) | 469 |
| BtsCI | GGATG | 2 cut(s) | 45, 326 |
| BtsIMutI | CAGTG | 1 cut(s) | 130 |
| CviAII | CATG | 2 cut(s) | 57, 145 |
| CviJI | RGCY | 9 cut(s) | 92, 130, 188, 359, 372, 446, 469, 497, 521 |
| CviKI_1 | RGCY | 9 cut(s) | 92, 130, 188, 359, 372, 446, 469, 497, 521 |
| DpnI | GATC | 3 cut(s) | 225, 345, 408 |
| DpnII | GATC | 3 cut(s) | 223, 343, 406 |
| DriI | GACNNNNNGTC | 1 cut(s) | 271 |
| EaeI | YGGCCR | 1 cut(s) | 467 |
| Eam1104I | CTCTTC | 1 cut(s) | 263 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 271 |
| EarI | CTCTTC | 1 cut(s) | 263 |
| Ecl136II | GAGCTC | 3 cut(s) | 92, 130, 188 |
| Eco24I | GRGCYC | 3 cut(s) | 94, 132, 190 |
| Eco53kI | GAGCTC | 3 cut(s) | 92, 130, 188 |
| Eco91I | GGTNACC | 1 cut(s) | 113 |
| EcoICRI | GAGCTC | 3 cut(s) | 92, 130, 188 |
| EcoO65I | GGTNACC | 1 cut(s) | 113 |
| EcoT38I | GRGCYC | 3 cut(s) | 94, 132, 190 |
| FaeI | CATG | 2 cut(s) | 60, 148 |
| FaiI | YATR | 5 cut(s) | 58, 146, 288, 290, 381 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 435, 467 |
| FatI | CATG | 2 cut(s) | 56, 144 |
| FauI | CCCGC | 1 cut(s) | 237 |
| Fnu4HI | GCNGC | 3 cut(s) | 178, 470, 519 |
| FokI | GGATG | 2 cut(s) | 52, 333 |
| FriOI | GRGCYC | 3 cut(s) | 94, 132, 190 |
| Fsp4HI | GCNGC | 3 cut(s) | 178, 470, 519 |
| FspBI | CTAG | 1 cut(s) | 473 |
| GluI | GCNGC | 3 cut(s) | 178, 470, 519 |
| GsaI | CCCAGC | 1 cut(s) | 525 |
| HaeIII | GGCC | 1 cut(s) | 469 |
| HapII | CCGG | 3 cut(s) | 341, 460, 510 |
| Hin1II | CATG | 2 cut(s) | 60, 148 |
| HincII | GTYRAC | 1 cut(s) | 265 |
| HindII | GTYRAC | 1 cut(s) | 265 |
| HinfI | GANTC | 3 cut(s) | 168, 431, 513 |
| HpaII | CCGG | 3 cut(s) | 341, 460, 510 |
| HphI | GGTGA | 2 cut(s) | 119, 125 |
| Hpy166II | GTNNAC | 1 cut(s) | 265 |
| Hpy188I | TCNGA | 2 cut(s) | 167, 492 |
| Hpy188III | TCNNGA | 5 cut(s) | 155, 191, 276, 410, 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 265 |
| HpyAV | CCTTC | 1 cut(s) | 81 |
| HpyCH4III | ACNGT | 3 cut(s) | 46, 113, 269 |
| HpyCH4V | TGCA | 2 cut(s) | 292, 324 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 469 |
| Hsp92II | CATG | 2 cut(s) | 60, 148 |
| Kzo9I | GATC | 3 cut(s) | 223, 343, 406 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LweI | GCATC | 1 cut(s) | 311 |
| MaeI | CTAG | 1 cut(s) | 473 |
| MaeIII | GTNAC | 4 cut(s) | 107, 113, 301, 352 |
| MalI | GATC | 3 cut(s) | 225, 345, 408 |
| MboI | GATC | 3 cut(s) | 223, 343, 406 |
| MboII | GAAGA | 9 cut(s) | 17, 20, 206, 250, 341, 344, 347, 416, 514 |
| MhlI | GDGCHC | 3 cut(s) | 94, 132, 190 |
| MluCI | AATT | 5 cut(s) | 11, 66, 78, 194, 399 |
| MnlI | CCTC | 5 cut(s) | 105, 154, 288, 397, 457 |
| MspA1I | CMGCKG | 1 cut(s) | 521 |
| MspI | CCGG | 3 cut(s) | 341, 460, 510 |
| MspR9I | CCNGG | 1 cut(s) | 341 |
| MvnI | CGCG | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 469 |
| NciI | CCSGG | 1 cut(s) | 341 |
| NdeII | GATC | 3 cut(s) | 223, 343, 406 |
| NlaIII | CATG | 2 cut(s) | 60, 148 |
| NmuCI | GTSAC | 3 cut(s) | 107, 113, 301 |
| PfeI | GAWTC | 3 cut(s) | 168, 431, 513 |
| PkrI | GCNGC | 3 cut(s) | 179, 471, 520 |
| Psp124BI | GAGCTC | 3 cut(s) | 94, 132, 190 |
| PspEI | GGTNACC | 1 cut(s) | 113 |
| PspFI | CCCAGC | 1 cut(s) | 521 |
| PvuII | CAGCTG | 1 cut(s) | 521 |
| SacI | GAGCTC | 3 cut(s) | 94, 132, 190 |
| SatI | GCNGC | 3 cut(s) | 178, 470, 519 |
| Sau3AI | GATC | 3 cut(s) | 223, 343, 406 |
| ScrFI | CCNGG | 1 cut(s) | 341 |
| SduI | GDGCHC | 3 cut(s) | 94, 132, 190 |
| SetI | ASST | 8 cut(s) | 94, 109, 132, 165, 190, 484, 499, 523 |
| SfaNI | GCATC | 1 cut(s) | 311 |
| SfcI | CTRYAG | 1 cut(s) | 85 |
| Sse9I | AATT | 5 cut(s) | 11, 66, 78, 194, 399 |
| SsiI | CCGC | 3 cut(s) | 178, 230, 470 |
| SspMI | CTAG | 1 cut(s) | 473 |
| SstI | GAGCTC | 3 cut(s) | 94, 132, 190 |
| StyD4I | CCNGG | 1 cut(s) | 339 |
| TaaI | ACNGT | 3 cut(s) | 46, 113, 269 |
| TaqI | TCGA | 2 cut(s) | 192, 222 |
| TasI | AATT | 5 cut(s) | 11, 66, 78, 194, 399 |
| TauI | GCSGC | 2 cut(s) | 180, 472 |
| TfiI | GAWTC | 3 cut(s) | 168, 431, 513 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TseFI | GTSAC | 3 cut(s) | 107, 113, 301 |
| TseI | GCWGC | 1 cut(s) | 518 |
| Tsp45I | GTSAC | 3 cut(s) | 107, 113, 301 |
| TspDTI | ATGAA | 1 cut(s) | 399 |
| TspGWI | ACGGA | 1 cut(s) | 320 |
| TspRI | CASTG | 1 cut(s) | 130 |
| XapI | RAATTY | 1 cut(s) | 194 |
| XspI | CTAG | 1 cut(s) | 473 |