Rroxscaffold_3G00237880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000049
Physical Location & Seq
Reverse (-)
25594777 .. 25596084
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237880.1

Sequence Viewer

Length: 804 bp
ATGTCGGAACCCATCTCCAGCCTAGCGGTTGCTTTCACTCTTAATGATAATGCGCACGTCGATCTCGAGCTGGCCGGGGAAGCGGCGCTACAAGACAACCGCCATTATATGGTGGGACAACGTCTCACAAGGAGGCCAAATATGGCCGGTTTCATTGGTACGATGCTCACTATATGGCGAATGAAGGGTGGTTTGTCAATCGAGCGGTTGGAAATCGTTTTGTTTTCCGGTTTGATCGTGAGGAAGATCGCAATCGGTATCTTCATGGAGGACGTGGTACTGCAGGTAGGGCTGCTGCTCAAGGTTAGCAGGAGCCTAAGAGTTTCCTTCCTCCGCAGGTCGTTGAGCGTGCGGCACGGCATCGGGGTCAAGTCTGTCTTCTTTTCGGAGCATCTCAACTCCGGCCTTAAGGCCGCTAGTCTACTGCAGAAATTAGTGAAACCGGGACCACCTGCGGAACCAAAGCGTAGCTTGGTTAGTAACATGTTACATGGGTCACCCGGGGATCGTTTCATCCAAGCATGCCAAGATGGTGGTTTTTTATGCGGCCGACTTTCGAGGTCATCAAGATACGGGAGGCTATGGGTACCGCCTATGGTCGAAGCGAGGTGCCGACCTATCTTTAGTGCGGCGGGTAAGAAGCTTTTAGCCCTACCTGCTCCTACCATGTCCGGGGTGGGAGATCTATCCCTCGGCCTTACCTCGAAAGATGATTGTTTGATTATCTCGCCACAAAAGAAGAAAGTTGGTCATCCAAAGGGATCCAAAAATAAGACTAAAGTTCCTATGGAGAAGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.11

Weight (kDa)

10.28

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc16I TGCGCA 1 cut(s) 54
Acc36I ACCTGC 4 cut(s) 274, 327, 460, 664
Acc65I GGTACC 1 cut(s) 586
AccB1I GGYRCC 2 cut(s) 586, 609
AccB7I CCANNNNNTGG 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 421
AclWI GGATC 3 cut(s) 513, 756, 769
AcoI YGGCCR 3 cut(s) 72, 144, 547
AfaI GTAC 3 cut(s) 160, 279, 588
AfiI CCNNNNNNNGG 2 cut(s) 109, 672
AflII CTTAAG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 483
AjiI CACGTC 2 cut(s) 58, 274
AluBI AGCT 4 cut(s) 70, 471, 643, 800
AluI AGCT 4 cut(s) 70, 471, 643, 800
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 3 cut(s) 513, 756, 769
Ama87I CYCGRG 2 cut(s) 65, 500
AoxI GGCC 7 cut(s) 72, 134, 144, 403, 411, 547, 694
ApeKI GCWGC 2 cut(s) 292, 295
Asp718I GGTACC 1 cut(s) 586
AspLEI GCGC 2 cut(s) 55, 88
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 5 cut(s) 76, 444, 501, 502, 673
AsuHPI GGTGA 1 cut(s) 489
AvaI CYCGRG 2 cut(s) 65, 500
AvaII GGWCC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 761
BanI GGYRCC 2 cut(s) 586, 609
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
BbsI GAAGAC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 279, 282
BccI CCATC 2 cut(s) 20, 524
BceAI ACGGC 1 cut(s) 373
BcnI CCSGG 5 cut(s) 76, 444, 501, 502, 673
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 23, 417
BfmI CTRYAG 2 cut(s) 281, 425
BfoI RGCGCY 1 cut(s) 89
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 4 cut(s) 274, 327, 460, 664
BglII AGATCT 1 cut(s) 682
BisI GCNGC 7 cut(s) 84, 293, 296, 353, 414, 547, 630
BlsI GCNGC 7 cut(s) 85, 294, 297, 354, 415, 548, 631
Bme1390I CCNGG 5 cut(s) 76, 444, 501, 502, 673
Bme18I GGWCC 1 cut(s) 446
BmeT110I CYCGRG 2 cut(s) 65, 500
BmgBI CACGTC 2 cut(s) 58, 274
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 7 cut(s) 9, 314, 447, 459, 588, 611, 763
BmrFI CCNGG 5 cut(s) 76, 444, 501, 502, 673
BmsI GCATC 3 cut(s) 153, 369, 400
BpiI GAAGAC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 5 cut(s) 76, 444, 501, 502, 673
BsaBI GATNNNNATC 1 cut(s) 251
BsaJI CCNNGG 5 cut(s) 75, 500, 501, 672, 691
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 672
Bse118I RCCGGY 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 251
BseDI CCNNGG 5 cut(s) 75, 500, 501, 672, 691
BseGI GGATG 2 cut(s) 513, 751
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 109, 672
BseX3I CGGCCG 1 cut(s) 547
BseXI GCAGC 2 cut(s) 279, 282
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 7 cut(s) 74, 136, 146, 405, 413, 549, 696
BshNI GGYRCC 2 cut(s) 586, 609
BsiEI CGRYCG 1 cut(s) 550
BsiHKCI CYCGRG 2 cut(s) 65, 500
BsiSI CCGG 7 cut(s) 75, 147, 228, 402, 443, 501, 672
BslFI GGGAC 2 cut(s) 129, 459
BslI CCNNNNNNNGG 2 cut(s) 109, 672
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 2 cut(s) 129, 459
BsnI GGCC 7 cut(s) 74, 136, 146, 405, 413, 549, 696
BsoBI CYCGRG 2 cut(s) 65, 500
Bsp143I GATC 6 cut(s) 61, 234, 246, 505, 682, 761
BspANI GGCC 7 cut(s) 74, 136, 146, 405, 413, 549, 696
BspLI GGNNCC 7 cut(s) 9, 314, 447, 459, 588, 611, 763
BspMAI CTGCAG 2 cut(s) 285, 429
BspMI ACCTGC 4 cut(s) 274, 327, 460, 664
BspPI GGATC 3 cut(s) 513, 756, 769
BspT107I GGYRCC 2 cut(s) 586, 609
BspTI CTTAAG 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 75, 500, 501, 672, 691
BssMI GATC 6 cut(s) 61, 234, 246, 505, 682, 761
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 72, 350, 523
BstDEI CTNAG 1 cut(s) 317
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 2 cut(s) 513, 751
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 55, 88
BstKTI GATC 6 cut(s) 64, 237, 249, 508, 685, 764
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 6 cut(s) 61, 234, 246, 505, 682, 761
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 3 cut(s) 80, 289, 656
BstNSI RCATGY 2 cut(s) 487, 525
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 5 cut(s) 74, 442, 499, 500, 671
BstSFI CTRYAG 2 cut(s) 281, 425
BstV1I GCAGC 2 cut(s) 279, 282
BstV2I GAAGAC 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 682, 761
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 2 cut(s) 682, 761
BstZI CGGCCG 1 cut(s) 547
BsuRI GGCC 7 cut(s) 74, 136, 146, 405, 413, 549, 696
BtrI CACGTC 2 cut(s) 58, 274
BtsCI GGATG 2 cut(s) 513, 751
BveI ACCTGC 4 cut(s) 274, 327, 460, 664
Cac8I GCNNGC 3 cut(s) 72, 350, 523
CfoI GCGC 2 cut(s) 55, 88
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 446
Cfr9I CCCGGG 1 cut(s) 500
Csp6I GTAC 3 cut(s) 159, 278, 587
CviAII CATG 5 cut(s) 265, 484, 491, 522, 667
CviQI GTAC 3 cut(s) 159, 278, 587
DdeI CTNAG 1 cut(s) 317
DpnI GATC 6 cut(s) 63, 236, 248, 507, 684, 763
DpnII GATC 6 cut(s) 61, 234, 246, 505, 682, 761
EaeI YGGCCR 3 cut(s) 72, 144, 547
EagI CGGCCG 1 cut(s) 547
EclXI CGGCCG 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 446
Eco52I CGGCCG 1 cut(s) 547
Eco88I CYCGRG 2 cut(s) 65, 500
Eco91I GGTNACC 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 5 cut(s) 268, 487, 494, 525, 670
FalI AAGNNNNNCTT 4 cut(s) 362, 394, 455, 487
FaqI GGGAC 2 cut(s) 129, 459
FatI CATG 5 cut(s) 264, 483, 490, 521, 666
FauI CCCGC 1 cut(s) 625
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 7 cut(s) 84, 293, 296, 353, 414, 547, 630
FokI GGATG 2 cut(s) 500, 738
Fsp4HI GCNGC 7 cut(s) 84, 293, 296, 353, 414, 547, 630
FspAI RTGCGCAY 1 cut(s) 54
FspBI CTAG 2 cut(s) 23, 417
FspI TGCGCA 1 cut(s) 54
GlaI GCGC 2 cut(s) 54, 87
GluI GCNGC 7 cut(s) 84, 293, 296, 353, 414, 547, 630
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 7 cut(s) 74, 136, 146, 405, 413, 549, 696
HapII CCGG 7 cut(s) 75, 147, 228, 402, 443, 501, 672
HhaI GCGC 2 cut(s) 55, 88
Hin1II CATG 5 cut(s) 268, 487, 494, 525, 670
Hin6I GCGC 2 cut(s) 53, 86
HinP1I GCGC 2 cut(s) 53, 86
HindIII AAGCTT 2 cut(s) 641, 798
HpaII CCGG 7 cut(s) 75, 147, 228, 402, 443, 501, 672
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 7, 388
Hpy188III TCNNGA 3 cut(s) 65, 238, 567
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 178, 337, 787
HpyCH4IV ACGT 3 cut(s) 57, 121, 273
HpyCH4V TGCA 2 cut(s) 283, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 289, 656
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 3 cut(s) 57, 121, 273
Hsp92II CATG 5 cut(s) 268, 487, 494, 525, 670
HspAI GCGC 2 cut(s) 53, 86
KpnI GGTACC 1 cut(s) 590
Kzo9I GATC 6 cut(s) 61, 234, 246, 505, 682, 761
LmnI GCTCC 3 cut(s) 312, 388, 664
Lsp1109I GCAGC 2 cut(s) 279, 282
LweI GCATC 3 cut(s) 153, 369, 400
MaeI CTAG 2 cut(s) 23, 417
MaeII ACGT 3 cut(s) 57, 121, 273
MaeIII GTNAC 3 cut(s) 479, 486, 495
MalI GATC 6 cut(s) 63, 236, 248, 507, 684, 763
MbiI CCGCTC 1 cut(s) 205
MboI GATC 6 cut(s) 61, 234, 246, 505, 682, 761
MboII GAAGA 4 cut(s) 253, 256, 370, 751
MflI RGATCY 2 cut(s) 682, 761
MluCI AATT 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 9 cut(s) 126, 234, 262, 341, 552, 570, 600, 701, 712
MseI TTAA 2 cut(s) 42, 408
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 7 cut(s) 75, 147, 228, 402, 443, 501, 672
MspR9I CCNGG 5 cut(s) 76, 444, 501, 502, 673
MwoI GCNNNNNNNGC 3 cut(s) 80, 289, 656
NciI CCSGG 5 cut(s) 76, 444, 501, 502, 673
NdeII GATC 6 cut(s) 61, 234, 246, 505, 682, 761
NlaIII CATG 5 cut(s) 268, 487, 494, 525, 670
NlaIV GGNNCC 7 cut(s) 9, 314, 447, 459, 588, 611, 763
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 1 cut(s) 495
NsbI TGCGCA 1 cut(s) 54
NspI RCATGY 2 cut(s) 487, 525
PaeI GCATGC 1 cut(s) 525
PaeR7I CTCGAG 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 460
PciI ACATGT 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 120
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 7 cut(s) 85, 294, 297, 354, 415, 548, 631
PscI ACATGT 1 cut(s) 483
PspEI GGTNACC 1 cut(s) 495
PspN4I GGNNCC 7 cut(s) 9, 314, 447, 459, 588, 611, 763
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 2 cut(s) 285, 429
PsuI RGATCY 2 cut(s) 682, 761
PsyI GACNNNGTC 1 cut(s) 120
RsaI GTAC 3 cut(s) 160, 279, 588
RsaNI GTAC 3 cut(s) 159, 278, 587
SaqAI TTAA 2 cut(s) 42, 408
SatI GCNGC 7 cut(s) 84, 293, 296, 353, 414, 547, 630
Sau3AI GATC 6 cut(s) 61, 234, 246, 505, 682, 761
Sau96I GGNCC 1 cut(s) 446
ScrFI CCNGG 5 cut(s) 76, 444, 501, 502, 673
SfaNI GCATC 3 cut(s) 153, 369, 400
SfcI CTRYAG 2 cut(s) 281, 425
Sfr274I CTCGAG 1 cut(s) 65
SinI GGWCC 1 cut(s) 446
SlaI CTCGAG 1 cut(s) 65
SmaI CCCGGG 1 cut(s) 502
SmlI CTYRAG 3 cut(s) 65, 299, 407
SmoI CTYRAG 3 cut(s) 65, 299, 407
SphI GCATGC 1 cut(s) 525
Sse9I AATT 1 cut(s) 431
SspMI CTAG 2 cut(s) 23, 417
StyD4I CCNGG 5 cut(s) 74, 442, 499, 500, 671
TaiI ACGT 3 cut(s) 60, 124, 276
TaqI TCGA 6 cut(s) 60, 66, 201, 557, 600, 704
TasI AATT 1 cut(s) 431
TauI GCSGC 5 cut(s) 86, 355, 416, 549, 632
Tru1I TTAA 2 cut(s) 42, 408
Tru9I TTAA 2 cut(s) 42, 408
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 2 cut(s) 292, 295
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 4 cut(s) 142, 197, 253, 502
TspMI CCCGGG 1 cut(s) 500
Tth111I GACNNNGTC 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 446
XceI RCATGY 2 cut(s) 487, 525
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XhoI CTCGAG 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 2 cut(s) 23, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.