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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 85 |
| Acc36I | ACCTGC | 1 cut(s) | 85 |
| AccI | GTMKAC | 1 cut(s) | 166 |
| AciI | CCGC | 2 cut(s) | 65, 130 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 304 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AluBI | AGCT | 2 cut(s) | 160, 293 |
| AluI | AGCT | 2 cut(s) | 160, 293 |
| Alw26I | GTCTC | 1 cut(s) | 206 |
| AoxI | GGCC | 3 cut(s) | 20, 127, 231 |
| AspS9I | GGNCC | 1 cut(s) | 231 |
| AsuC2I | CCSGG | 1 cut(s) | 48 |
| AsuHPI | GGTGA | 2 cut(s) | 100, 250 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BclI | TGATCA | 2 cut(s) | 3, 280 |
| BcnI | CCSGG | 1 cut(s) | 48 |
| BcoDI | GTCTC | 1 cut(s) | 206 |
| BfuAI | ACCTGC | 1 cut(s) | 85 |
| BisI | GCNGC | 2 cut(s) | 65, 130 |
| BlsI | GCNGC | 2 cut(s) | 66, 131 |
| Bme1390I | CCNGG | 2 cut(s) | 48, 119 |
| BmgT120I | GGNCC | 1 cut(s) | 231 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BmrFI | CCNGG | 2 cut(s) | 48, 119 |
| BoxI | GACNNNNGTC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 1 cut(s) | 290 |
| BpuMI | CCSGG | 1 cut(s) | 48 |
| BsaJI | CCNNGG | 2 cut(s) | 117, 234 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 304 |
| Bse1I | ACTGG | 1 cut(s) | 298 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 2 cut(s) | 117, 234 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 304 |
| BseNI | ACTGG | 1 cut(s) | 298 |
| BseRI | GAGGAG | 2 cut(s) | 224, 287 |
| BshFI | GGCC | 3 cut(s) | 22, 129, 233 |
| BsiSI | CCGG | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 304 |
| BsmAI | GTCTC | 1 cut(s) | 206 |
| BsnI | GGCC | 3 cut(s) | 22, 129, 233 |
| Bsp143I | GATC | 2 cut(s) | 3, 280 |
| BspACI | CCGC | 2 cut(s) | 65, 130 |
| BspANI | GGCC | 3 cut(s) | 22, 129, 233 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BspMI | ACCTGC | 1 cut(s) | 85 |
| BsrI | ACTGG | 1 cut(s) | 298 |
| BssECI | CCNNGG | 2 cut(s) | 117, 234 |
| BssMI | GATC | 2 cut(s) | 3, 280 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 217 |
| BstDEI | CTNAG | 2 cut(s) | 180, 260 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstKTI | GATC | 2 cut(s) | 6, 283 |
| BstMAI | GTCTC | 1 cut(s) | 206 |
| BstMBI | GATC | 2 cut(s) | 3, 280 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 218 |
| BstSCI | CCNGG | 2 cut(s) | 46, 117 |
| BsuRI | GGCC | 3 cut(s) | 22, 129, 233 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 13 |
| BveI | ACCTGC | 1 cut(s) | 85 |
| Cfr13I | GGNCC | 1 cut(s) | 231 |
| CviAII | CATG | 1 cut(s) | 284 |
| CviJI | RGCY | 5 cut(s) | 22, 129, 160, 233, 293 |
| CviKI_1 | RGCY | 5 cut(s) | 22, 129, 160, 233, 293 |
| DdeI | CTNAG | 2 cut(s) | 180, 260 |
| DpnI | GATC | 2 cut(s) | 5, 282 |
| DpnII | GATC | 2 cut(s) | 3, 280 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco147I | AGGCCT | 1 cut(s) | 22 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaeI | CATG | 1 cut(s) | 287 |
| FaiI | YATR | 1 cut(s) | 285 |
| FatI | CATG | 1 cut(s) | 283 |
| FbaI | TGATCA | 2 cut(s) | 3, 280 |
| FblI | GTMKAC | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 2 cut(s) | 65, 130 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 2 cut(s) | 65, 130 |
| GluI | GCNGC | 2 cut(s) | 65, 130 |
| HaeIII | GGCC | 3 cut(s) | 22, 129, 233 |
| HapII | CCGG | 1 cut(s) | 47 |
| Hin1II | CATG | 1 cut(s) | 287 |
| HincII | GTYRAC | 1 cut(s) | 167 |
| HindII | GTYRAC | 1 cut(s) | 167 |
| HindIII | AAGCTT | 1 cut(s) | 158 |
| HinfI | GANTC | 1 cut(s) | 226 |
| HpaII | CCGG | 1 cut(s) | 47 |
| HphI | GGTGA | 2 cut(s) | 100, 250 |
| Hpy166II | GTNNAC | 2 cut(s) | 53, 167 |
| Hpy188I | TCNGA | 1 cut(s) | 249 |
| Hpy188III | TCNNGA | 1 cut(s) | 223 |
| Hpy8I | GTNNAC | 2 cut(s) | 53, 167 |
| HpyAV | CCTTC | 1 cut(s) | 199 |
| HpyCH4III | ACNGT | 1 cut(s) | 217 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 260 |
| Hsp92II | CATG | 1 cut(s) | 287 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 280 |
| Kzo9I | GATC | 2 cut(s) | 3, 280 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| LpnPI | CCDG | 6 cut(s) | 60, 90, 104, 131, 146, 311 |
| MaeIII | GTNAC | 1 cut(s) | 11 |
| MalI | GATC | 2 cut(s) | 5, 282 |
| MboI | GATC | 2 cut(s) | 3, 280 |
| MboII | GAAGA | 1 cut(s) | 107 |
| MmeI | TCCRAC | 2 cut(s) | 227, 282 |
| MnlI | CCTC | 6 cut(s) | 78, 202, 265, 268, 298, 315 |
| MseI | TTAA | 1 cut(s) | 137 |
| MspI | CCGG | 1 cut(s) | 47 |
| MspR9I | CCNGG | 2 cut(s) | 48, 119 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| NciI | CCSGG | 1 cut(s) | 48 |
| NdeII | GATC | 2 cut(s) | 3, 280 |
| NlaIII | CATG | 1 cut(s) | 287 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| NmuCI | GTSAC | 1 cut(s) | 11 |
| PaqCI | CACCTGC | 1 cut(s) | 85 |
| PceI | AGGCCT | 1 cut(s) | 22 |
| PfeI | GAWTC | 1 cut(s) | 226 |
| PkrI | GCNGC | 2 cut(s) | 66, 131 |
| PshAI | GACNNNNGTC | 1 cut(s) | 218 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| PspPI | GGNCC | 1 cut(s) | 231 |
| SalI | GTCGAC | 1 cut(s) | 165 |
| SaqAI | TTAA | 1 cut(s) | 137 |
| SatI | GCNGC | 2 cut(s) | 65, 130 |
| Sau3AI | GATC | 2 cut(s) | 3, 280 |
| Sau96I | GGNCC | 1 cut(s) | 231 |
| ScrFI | CCNGG | 2 cut(s) | 48, 119 |
| SetI | ASST | 8 cut(s) | 79, 162, 172, 178, 240, 247, 295, 309 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| SseBI | AGGCCT | 1 cut(s) | 22 |
| SsiI | CCGC | 2 cut(s) | 65, 130 |
| StuI | AGGCCT | 1 cut(s) | 22 |
| StyD4I | CCNGG | 2 cut(s) | 46, 117 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaaI | ACNGT | 1 cut(s) | 217 |
| TaqI | TCGA | 1 cut(s) | 166 |
| TauI | GCSGC | 2 cut(s) | 67, 132 |
| TfiI | GAWTC | 1 cut(s) | 226 |
| Tru1I | TTAA | 1 cut(s) | 137 |
| Tru9I | TTAA | 1 cut(s) | 137 |
| TscAI | CASTG | 1 cut(s) | 13 |
| TseFI | GTSAC | 1 cut(s) | 11 |
| Tsp45I | GTSAC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 1 cut(s) | 108 |
| TspGWI | ACGGA | 1 cut(s) | 41 |
| TspRI | CASTG | 1 cut(s) | 13 |
| XmiI | GTMKAC | 1 cut(s) | 166 |