Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 198, 919 |
| Acc65I | GGTACC | 1 cut(s) | 710 |
| AccB1I | GGYRCC | 1 cut(s) | 710 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 805 |
| AccII | CGCG | 1 cut(s) | 736 |
| AclWI | GGATC | 1 cut(s) | 353 |
| AcoI | YGGCCR | 3 cut(s) | 526, 965, 1013 |
| AcyI | GRCGYC | 1 cut(s) | 72 |
| AfaI | GTAC | 2 cut(s) | 601, 712 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 26, 449, 800, 805, 943 |
| AgsI | TTSAA | 2 cut(s) | 140, 836 |
| AjiI | CACGTC | 1 cut(s) | 367 |
| AjnI | CCWGG | 2 cut(s) | 763, 865 |
| AluBI | AGCT | 8 cut(s) | 130, 143, 271, 321, 480, 509, 950, 956 |
| AluI | AGCT | 8 cut(s) | 130, 143, 271, 321, 480, 509, 950, 956 |
| Alw21I | GWGCWC | 1 cut(s) | 724 |
| Alw26I | GTCTC | 2 cut(s) | 432, 562 |
| AlwI | GGATC | 1 cut(s) | 353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 535 |
| AoxI | GGCC | 8 cut(s) | 145, 526, 650, 674, 702, 965, 1013, 1037 |
| ApeKI | GCWGC | 4 cut(s) | 506, 623, 898, 947 |
| Asp718I | GGTACC | 1 cut(s) | 710 |
| AspS9I | GGNCC | 3 cut(s) | 146, 674, 761 |
| AsuC2I | CCSGG | 1 cut(s) | 21 |
| AsuII | TTCGAA | 1 cut(s) | 220 |
| AsuNHI | GCTAGC | 1 cut(s) | 626 |
| AvaII | GGWCC | 1 cut(s) | 761 |
| AxyI | CCTNAGG | 1 cut(s) | 102 |
| BalI | TGGCCA | 1 cut(s) | 528 |
| BanI | GGYRCC | 1 cut(s) | 710 |
| Bbv12I | GWGCWC | 1 cut(s) | 724 |
| BbvI | GCAGC | 4 cut(s) | 518, 610, 910, 959 |
| BccI | CCATC | 1 cut(s) | 820 |
| BceAI | ACGGC | 1 cut(s) | 980 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 215, 249 |
| BciT130I | CCWGG | 2 cut(s) | 765, 867 |
| BciVI | GTATCC | 1 cut(s) | 194 |
| BclI | TGATCA | 1 cut(s) | 264 |
| BcnI | CCSGG | 1 cut(s) | 21 |
| BcoDI | GTCTC | 2 cut(s) | 432, 562 |
| BfaI | CTAG | 2 cut(s) | 627, 669 |
| BfuAI | ACCTGC | 2 cut(s) | 198, 919 |
| BfuI | GTATCC | 1 cut(s) | 194 |
| BisI | GCNGC | 8 cut(s) | 507, 624, 899, 929, 948, 968, 1013, 1067 |
| BlsI | GCNGC | 8 cut(s) | 508, 625, 900, 930, 949, 969, 1014, 1068 |
| Bme1390I | CCNGG | 3 cut(s) | 21, 765, 867 |
| Bme18I | GGWCC | 1 cut(s) | 761 |
| BmgBI | CACGTC | 1 cut(s) | 367 |
| BmgT120I | GGNCC | 3 cut(s) | 146, 674, 761 |
| BmiI | GGNNCC | 2 cut(s) | 31, 712 |
| BmrFI | CCNGG | 3 cut(s) | 21, 765, 867 |
| BmrI | ACTGGG | 1 cut(s) | 459 |
| BmsI | GCATC | 6 cut(s) | 202, 223, 493, 506, 870, 1067 |
| BmtI | GCTAGC | 1 cut(s) | 630 |
| BmuI | ACTGGG | 1 cut(s) | 459 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 637, 669 |
| BpmI | CTGGAG | 2 cut(s) | 708, 936 |
| Bpu14I | TTCGAA | 1 cut(s) | 220 |
| BpuMI | CCSGG | 1 cut(s) | 21 |
| BsaHI | GRCGYC | 1 cut(s) | 72 |
| BsaI | GGTCTC | 1 cut(s) | 432 |
| BsaJI | CCNNGG | 4 cut(s) | 460, 714, 799, 962 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 399, 429 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 26, 449, 800, 805, 943 |
| Bse118I | RCCGGY | 1 cut(s) | 648 |
| Bse1I | ACTGG | 3 cut(s) | 454, 529, 725 |
| Bse21I | CCTNAGG | 1 cut(s) | 102 |
| Bse3DI | GCAATG | 1 cut(s) | 525 |
| BseBI | CCWGG | 2 cut(s) | 765, 867 |
| BseDI | CCNNGG | 4 cut(s) | 460, 714, 799, 962 |
| BseGI | GGATG | 3 cut(s) | 238, 331, 376 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 26, 449, 800, 805, 943 |
| BseMI | GCAATG | 1 cut(s) | 525 |
| BseMII | CTCAG | 2 cut(s) | 116, 713 |
| BseNI | ACTGG | 3 cut(s) | 454, 529, 725 |
| BseRI | GAGGAG | 1 cut(s) | 948 |
| BseX3I | CGGCCG | 1 cut(s) | 965 |
| BseXI | GCAGC | 4 cut(s) | 518, 610, 910, 959 |
| Bsh1236I | CGCG | 1 cut(s) | 736 |
| Bsh1285I | CGRYCG | 1 cut(s) | 968 |
| BshFI | GGCC | 8 cut(s) | 147, 528, 652, 676, 704, 967, 1015, 1039 |
| BshNI | GGYRCC | 1 cut(s) | 710 |
| BsiEI | CGRYCG | 1 cut(s) | 968 |
| BsiHKAI | GWGCWC | 1 cut(s) | 724 |
| BsiSI | CCGG | 3 cut(s) | 20, 605, 649 |
| BslFI | GGGAC | 1 cut(s) | 723 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 26, 449, 800, 805, 943 |
| BsmAI | GTCTC | 2 cut(s) | 432, 562 |
| BsmFI | GGGAC | 1 cut(s) | 723 |
| BsnI | GGCC | 8 cut(s) | 147, 528, 652, 676, 704, 967, 1015, 1039 |
| Bso31I | GGTCTC | 1 cut(s) | 432 |
| Bsp119I | TTCGAA | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 1 cut(s) | 724 |
| Bsp143I | GATC | 2 cut(s) | 264, 358 |
| Bsp19I | CCATGG | 1 cut(s) | 714 |
| BspANI | GGCC | 8 cut(s) | 147, 528, 652, 676, 704, 967, 1015, 1039 |
| BspCNI | CTCAG | 2 cut(s) | 115, 712 |
| BspFNI | CGCG | 1 cut(s) | 736 |
| BspLI | GGNNCC | 2 cut(s) | 31, 712 |
| BspMI | ACCTGC | 2 cut(s) | 198, 919 |
| BspOI | GCTAGC | 1 cut(s) | 630 |
| BspPI | GGATC | 1 cut(s) | 353 |
| BspT104I | TTCGAA | 1 cut(s) | 220 |
| BspT107I | GGYRCC | 1 cut(s) | 710 |
| BspTNI | GGTCTC | 1 cut(s) | 432 |
| BsrDI | GCAATG | 1 cut(s) | 525 |
| BsrFI | RCCGGY | 1 cut(s) | 648 |
| BsrI | ACTGG | 3 cut(s) | 454, 529, 725 |
| BssAI | RCCGGY | 1 cut(s) | 648 |
| BssECI | CCNNGG | 4 cut(s) | 460, 714, 799, 962 |
| BssMI | GATC | 2 cut(s) | 264, 358 |
| BssNI | GRCGYC | 1 cut(s) | 72 |
| BssT1I | CCWWGG | 2 cut(s) | 714, 799 |
| Bst2UI | CCWGG | 2 cut(s) | 765, 867 |
| Bst4CI | ACNGT | 2 cut(s) | 556, 663 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstACI | GRCGYC | 1 cut(s) | 72 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 503 |
| BstBI | TTCGAA | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 3 cut(s) | 145, 628, 650 |
| BstDEI | CTNAG | 3 cut(s) | 102, 642, 699 |
| BstDSI | CCRYGG | 3 cut(s) | 460, 714, 962 |
| BstF5I | GGATG | 3 cut(s) | 238, 331, 376 |
| BstFNI | CGCG | 1 cut(s) | 736 |
| BstKTI | GATC | 2 cut(s) | 267, 361 |
| BstMAI | GTCTC | 2 cut(s) | 432, 562 |
| BstMBI | GATC | 2 cut(s) | 264, 358 |
| BstMCI | CGRYCG | 1 cut(s) | 968 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 127, 242, 477, 503, 515, 853, 889, 898, 953 |
| BstNI | CCWGG | 2 cut(s) | 765, 867 |
| BstNSI | RCATGY | 2 cut(s) | 928, 1051 |
| BstSCI | CCNGG | 3 cut(s) | 19, 763, 865 |
| BstUI | CGCG | 1 cut(s) | 736 |
| BstV1I | GCAGC | 4 cut(s) | 518, 610, 910, 959 |
| BstZI | CGGCCG | 1 cut(s) | 965 |
| Bsu36I | CCTNAGG | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 194 |
| BsuRI | GGCC | 8 cut(s) | 147, 528, 652, 676, 704, 967, 1015, 1039 |
| BtgI | CCRYGG | 3 cut(s) | 460, 714, 962 |
| BtrI | CACGTC | 1 cut(s) | 367 |
| BtsCI | GGATG | 3 cut(s) | 238, 331, 376 |
| BtsI | GCAGTG | 1 cut(s) | 75 |
| BtsIMutI | CAGTG | 4 cut(s) | 75, 403, 659, 732 |
| BveI | ACCTGC | 2 cut(s) | 198, 919 |
| Cac8I | GCNNGC | 3 cut(s) | 145, 628, 650 |
| CaiI | CAGNNNCTG | 1 cut(s) | 535 |
| Cfr10I | RCCGGY | 1 cut(s) | 648 |
| Cfr13I | GGNCC | 3 cut(s) | 146, 674, 761 |
| CseI | GACGC | 3 cut(s) | 80, 581, 725 |
| CsiI | ACCWGGT | 1 cut(s) | 865 |
| Csp6I | GTAC | 2 cut(s) | 600, 711 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 989, 1024 |
| CviAII | CATG | 4 cut(s) | 596, 715, 925, 1048 |
| CviQI | GTAC | 2 cut(s) | 600, 711 |
| DdeI | CTNAG | 3 cut(s) | 102, 642, 699 |
| DpnI | GATC | 2 cut(s) | 266, 360 |
| DpnII | GATC | 2 cut(s) | 264, 358 |
| EaeI | YGGCCR | 3 cut(s) | 526, 965, 1013 |
| EagI | CGGCCG | 1 cut(s) | 965 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| EciI | GGCGGA | 2 cut(s) | 43, 765 |
| EclXI | CGGCCG | 1 cut(s) | 965 |
| Eco130I | CCWWGG | 2 cut(s) | 714, 799 |
| Eco147I | AGGCCT | 1 cut(s) | 1039 |
| Eco31I | GGTCTC | 1 cut(s) | 432 |
| Eco47I | GGWCC | 1 cut(s) | 761 |
| Eco52I | CGGCCG | 1 cut(s) | 965 |
| Eco81I | CCTNAGG | 1 cut(s) | 102 |
| EcoRII | CCWGG | 2 cut(s) | 763, 865 |
| EcoT14I | CCWWGG | 2 cut(s) | 714, 799 |
| EcoT22I | ATGCAT | 1 cut(s) | 568 |
| ErhI | CCWWGG | 2 cut(s) | 714, 799 |
| FaeI | CATG | 4 cut(s) | 599, 718, 928, 1051 |
| FaqI | GGGAC | 1 cut(s) | 723 |
| FatI | CATG | 4 cut(s) | 595, 714, 924, 1047 |
| FauI | CCCGC | 1 cut(s) | 822 |
| FauNDI | CATATG | 1 cut(s) | 562 |
| FbaI | TGATCA | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 8 cut(s) | 507, 624, 899, 929, 948, 968, 1013, 1067 |
| FokI | GGATG | 3 cut(s) | 245, 338, 383 |
| Fsp4HI | GCNGC | 8 cut(s) | 507, 624, 899, 929, 948, 968, 1013, 1067 |
| FspBI | CTAG | 2 cut(s) | 627, 669 |
| GluI | GCNGC | 8 cut(s) | 507, 624, 899, 929, 948, 968, 1013, 1067 |
| GsuI | CTGGAG | 2 cut(s) | 708, 936 |
| HaeIII | GGCC | 8 cut(s) | 147, 528, 652, 676, 704, 967, 1015, 1039 |
| HapII | CCGG | 3 cut(s) | 20, 605, 649 |
| HgaI | GACGC | 3 cut(s) | 80, 581, 725 |
| Hin1I | GRCGYC | 1 cut(s) | 72 |
| Hin1II | CATG | 4 cut(s) | 599, 718, 928, 1051 |
| HincII | GTYRAC | 2 cut(s) | 47, 872 |
| HindII | GTYRAC | 2 cut(s) | 47, 872 |
| HindIII | AAGCTT | 1 cut(s) | 269 |
| HinfI | GANTC | 6 cut(s) | 7, 24, 207, 408, 485, 772 |
| HpaII | CCGG | 3 cut(s) | 20, 605, 649 |
| Hpy166II | GTNNAC | 3 cut(s) | 47, 788, 872 |
| Hpy188I | TCNGA | 5 cut(s) | 29, 350, 502, 771, 908 |
| Hpy188III | TCNNGA | 3 cut(s) | 95, 356, 362 |
| Hpy8I | GTNNAC | 3 cut(s) | 47, 788, 872 |
| Hpy99I | CGWCG | 2 cut(s) | 89, 350 |
| HpyCH4III | ACNGT | 2 cut(s) | 556, 663 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 366 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 127, 242, 477, 503, 515, 853, 889, 898, 953 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 642, 699 |
| HpySE526I | ACGT | 2 cut(s) | 84, 366 |
| Hsp92I | GRCGYC | 1 cut(s) | 72 |
| Hsp92II | CATG | 4 cut(s) | 599, 718, 928, 1051 |
| KpnI | GGTACC | 1 cut(s) | 714 |
| KroI | GCCGGC | 1 cut(s) | 648 |
| KroNI | GCCGGC | 1 cut(s) | 650 |
| Ksp22I | TGATCA | 1 cut(s) | 264 |
| Kzo9I | GATC | 2 cut(s) | 264, 358 |
| LmnI | GCTCC | 8 cut(s) | 22, 29, 127, 589, 727, 919, 955, 961 |
| Lsp1109I | GCAGC | 4 cut(s) | 518, 610, 910, 959 |
| LweI | GCATC | 6 cut(s) | 202, 223, 493, 506, 870, 1067 |
| MabI | ACCWGGT | 1 cut(s) | 865 |
| MaeI | CTAG | 2 cut(s) | 627, 669 |
| MaeII | ACGT | 2 cut(s) | 84, 366 |
| MaeIII | GTNAC | 2 cut(s) | 181, 415 |
| MalI | GATC | 2 cut(s) | 266, 360 |
| MboI | GATC | 2 cut(s) | 264, 358 |
| MboII | GAAGA | 2 cut(s) | 125, 239 |
| MhlI | GDGCHC | 1 cut(s) | 724 |
| MlsI | TGGCCA | 1 cut(s) | 528 |
| MluCI | AATT | 3 cut(s) | 12, 116, 285 |
| MluNI | TGGCCA | 1 cut(s) | 528 |
| MlyI | GAGTC | 2 cut(s) | 33, 417 |
| MmeI | TCCRAC | 3 cut(s) | 7, 328, 704 |
| Mox20I | TGGCCA | 1 cut(s) | 528 |
| Mph1103I | ATGCAT | 1 cut(s) | 568 |
| MroNI | GCCGGC | 1 cut(s) | 648 |
| MscI | TGGCCA | 1 cut(s) | 528 |
| MseI | TTAA | 3 cut(s) | 156, 258, 1083 |
| Msp20I | TGGCCA | 1 cut(s) | 528 |
| MspI | CCGG | 3 cut(s) | 20, 605, 649 |
| MspR9I | CCNGG | 3 cut(s) | 21, 765, 867 |
| MvaI | CCWGG | 2 cut(s) | 765, 867 |
| MvnI | CGCG | 1 cut(s) | 736 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 127, 242, 477, 503, 515, 853, 889, 898, 953 |
| NaeI | GCCGGC | 1 cut(s) | 650 |
| NciI | CCSGG | 1 cut(s) | 21 |
| NcoI | CCATGG | 1 cut(s) | 714 |
| NdeI | CATATG | 1 cut(s) | 562 |
| NdeII | GATC | 2 cut(s) | 264, 358 |
| NgoMIV | GCCGGC | 1 cut(s) | 648 |
| NheI | GCTAGC | 1 cut(s) | 626 |
| NlaIII | CATG | 4 cut(s) | 599, 718, 928, 1051 |
| NlaIV | GGNNCC | 2 cut(s) | 31, 712 |
| NmeAIII | GCCGAG | 1 cut(s) | 82 |
| NsiI | ATGCAT | 1 cut(s) | 568 |
| NspI | RCATGY | 2 cut(s) | 928, 1051 |
| NspV | TTCGAA | 1 cut(s) | 220 |
| PceI | AGGCCT | 1 cut(s) | 1039 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PdiI | GCCGGC | 1 cut(s) | 650 |
| PfeI | GAWTC | 3 cut(s) | 207, 485, 772 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 805 |
| PfoI | TCCNGGA | 1 cut(s) | 19 |
| PkrI | GCNGC | 8 cut(s) | 508, 625, 900, 930, 949, 969, 1014, 1068 |
| PleI | GAGTC | 2 cut(s) | 32, 416 |
| PpsI | GAGTC | 2 cut(s) | 32, 416 |
| Psp6I | CCWGG | 2 cut(s) | 763, 865 |
| PspGI | CCWGG | 2 cut(s) | 763, 865 |
| PspN4I | GGNNCC | 2 cut(s) | 31, 712 |
| PspPI | GGNCC | 3 cut(s) | 146, 674, 761 |
| PstNI | CAGNNNCTG | 1 cut(s) | 535 |
| RsaI | GTAC | 2 cut(s) | 601, 712 |
| RsaNI | GTAC | 2 cut(s) | 600, 711 |
| SaqAI | TTAA | 3 cut(s) | 156, 258, 1083 |
| SatI | GCNGC | 8 cut(s) | 507, 624, 899, 929, 948, 968, 1013, 1067 |
| Sau3AI | GATC | 2 cut(s) | 264, 358 |
| Sau96I | GGNCC | 3 cut(s) | 146, 674, 761 |
| SchI | GAGTC | 2 cut(s) | 33, 417 |
| ScrFI | CCNGG | 3 cut(s) | 21, 765, 867 |
| SduI | GDGCHC | 1 cut(s) | 724 |
| SexAI | ACCWGGT | 1 cut(s) | 865 |
| SfaNI | GCATC | 6 cut(s) | 202, 223, 493, 506, 870, 1067 |
| SfuI | TTCGAA | 1 cut(s) | 220 |
| SinI | GGWCC | 1 cut(s) | 761 |
| Sse9I | AATT | 3 cut(s) | 12, 116, 285 |
| SseBI | AGGCCT | 1 cut(s) | 1039 |
| SspMI | CTAG | 2 cut(s) | 627, 669 |
| StuI | AGGCCT | 1 cut(s) | 1039 |
| StyD4I | CCNGG | 3 cut(s) | 19, 763, 865 |
| StyI | CCWWGG | 2 cut(s) | 714, 799 |
| TaaI | ACNGT | 2 cut(s) | 556, 663 |
| TaiI | ACGT | 2 cut(s) | 87, 369 |
| TaqI | TCGA | 4 cut(s) | 10, 96, 220, 289 |
| TaqII | GACCGA | 1 cut(s) | 32 |
| TasI | AATT | 3 cut(s) | 12, 116, 285 |
| TauI | GCSGC | 4 cut(s) | 931, 970, 1015, 1069 |
| TfiI | GAWTC | 3 cut(s) | 207, 485, 772 |
| Tru1I | TTAA | 3 cut(s) | 156, 258, 1083 |
| Tru9I | TTAA | 3 cut(s) | 156, 258, 1083 |
| TscAI | CASTG | 4 cut(s) | 82, 403, 666, 732 |
| TseI | GCWGC | 4 cut(s) | 506, 623, 898, 947 |
| TspDTI | ATGAA | 2 cut(s) | 463, 536 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| TspRI | CASTG | 4 cut(s) | 82, 403, 666, 732 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 805 |
| VpaK11BI | GGWCC | 1 cut(s) | 761 |
| XceI | RCATGY | 2 cut(s) | 928, 1051 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 712 |
| XspI | CTAG | 2 cut(s) | 627, 669 |
| Zsp2I | ATGCAT | 1 cut(s) | 568 |