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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 808 |
| Acc65I | GGTACC | 1 cut(s) | 52 |
| AccB1I | GGYRCC | 1 cut(s) | 52 |
| AciI | CCGC | 2 cut(s) | 26, 270 |
| AclWI | GGATC | 1 cut(s) | 73 |
| AfaI | GTAC | 3 cut(s) | 54, 384, 797 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 338, 667 |
| AgsI | TTSAA | 2 cut(s) | 149, 197 |
| AhlI | ACTAGT | 1 cut(s) | 697 |
| AjnI | CCWGG | 1 cut(s) | 812 |
| AluBI | AGCT | 7 cut(s) | 97, 164, 200, 241, 558, 581, 614 |
| AluI | AGCT | 7 cut(s) | 97, 164, 200, 241, 558, 581, 614 |
| Alw26I | GTCTC | 2 cut(s) | 323, 665 |
| AlwI | GGATC | 1 cut(s) | 73 |
| ApeKI | GCWGC | 3 cut(s) | 131, 134, 164 |
| Asp718I | GGTACC | 1 cut(s) | 52 |
| AspA2I | CCTAGG | 2 cut(s) | 56, 109 |
| AspLEI | GCGC | 1 cut(s) | 139 |
| AspS9I | GGNCC | 2 cut(s) | 106, 685 |
| AsuC2I | CCSGG | 2 cut(s) | 309, 332 |
| AsuHPI | GGTGA | 1 cut(s) | 560 |
| AvaII | GGWCC | 2 cut(s) | 106, 685 |
| AvrII | CCTAGG | 2 cut(s) | 56, 109 |
| BanI | GGYRCC | 1 cut(s) | 52 |
| BanII | GRGCYC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 2 cut(s) | 419, 648 |
| BbvI | GCAGC | 3 cut(s) | 143, 146, 151 |
| BccI | CCATC | 1 cut(s) | 599 |
| BciT130I | CCWGG | 1 cut(s) | 814 |
| BciVI | GTATCC | 1 cut(s) | 659 |
| BcnI | CCSGG | 2 cut(s) | 309, 332 |
| BcoDI | GTCTC | 2 cut(s) | 323, 665 |
| BcuI | ACTAGT | 1 cut(s) | 697 |
| BfaI | CTAG | 7 cut(s) | 57, 84, 110, 242, 698, 704, 716 |
| BfmI | CTRYAG | 3 cut(s) | 252, 582, 675 |
| BfuAI | ACCTGC | 1 cut(s) | 808 |
| BfuI | GTATCC | 1 cut(s) | 659 |
| BisI | GCNGC | 3 cut(s) | 132, 135, 165 |
| BlnI | CCTAGG | 2 cut(s) | 56, 109 |
| BlsI | GCNGC | 3 cut(s) | 133, 136, 166 |
| Bme1390I | CCNGG | 3 cut(s) | 309, 332, 814 |
| Bme18I | GGWCC | 2 cut(s) | 106, 685 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 685 |
| BmiI | GGNNCC | 3 cut(s) | 54, 107, 158 |
| BmrFI | CCNGG | 3 cut(s) | 309, 332, 814 |
| BpiI | GAAGAC | 2 cut(s) | 419, 648 |
| Bpu10I | CCTNAGC | 1 cut(s) | 93 |
| BpuEI | CTTGAG | 1 cut(s) | 363 |
| BpuMI | CCSGG | 2 cut(s) | 309, 332 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 109 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 338, 667 |
| BseBI | CCWGG | 1 cut(s) | 814 |
| BseDI | CCNNGG | 2 cut(s) | 56, 109 |
| BseGI | GGATG | 2 cut(s) | 610, 628 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 338, 667 |
| BseXI | GCAGC | 3 cut(s) | 143, 146, 151 |
| BseYI | CCCAGC | 1 cut(s) | 614 |
| BshNI | GGYRCC | 1 cut(s) | 52 |
| BsiSI | CCGG | 2 cut(s) | 309, 332 |
| BslFI | GGGAC | 3 cut(s) | 44, 119, 414 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 338, 667 |
| BsmAI | GTCTC | 2 cut(s) | 323, 665 |
| BsmBI | CGTCTC | 1 cut(s) | 323 |
| BsmFI | GGGAC | 3 cut(s) | 44, 119, 414 |
| BsmI | GAATGC | 2 cut(s) | 167, 804 |
| Bsp1286I | GDGCHC | 1 cut(s) | 224 |
| Bsp143I | GATC | 1 cut(s) | 78 |
| BspACI | CCGC | 2 cut(s) | 26, 270 |
| BspHI | TCATGA | 2 cut(s) | 396, 726 |
| BspLI | GGNNCC | 3 cut(s) | 54, 107, 158 |
| BspMAI | CTGCAG | 1 cut(s) | 256 |
| BspMI | ACCTGC | 1 cut(s) | 808 |
| BspPI | GGATC | 1 cut(s) | 73 |
| BspT107I | GGYRCC | 1 cut(s) | 52 |
| BssECI | CCNNGG | 2 cut(s) | 56, 109 |
| BssMI | GATC | 1 cut(s) | 78 |
| BssT1I | CCWWGG | 2 cut(s) | 56, 109 |
| Bst2UI | CCWGG | 1 cut(s) | 814 |
| Bst4CI | ACNGT | 1 cut(s) | 647 |
| BstC8I | GCNNGC | 3 cut(s) | 89, 141, 272 |
| BstDEI | CTNAG | 2 cut(s) | 93, 408 |
| BstF5I | GGATG | 2 cut(s) | 610, 628 |
| BstHHI | GCGC | 1 cut(s) | 139 |
| BstKTI | GATC | 1 cut(s) | 81 |
| BstMAI | GTCTC | 2 cut(s) | 323, 665 |
| BstMBI | GATC | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 140 |
| BstNI | CCWGG | 1 cut(s) | 814 |
| BstSCI | CCNGG | 3 cut(s) | 307, 330, 812 |
| BstSFI | CTRYAG | 3 cut(s) | 252, 582, 675 |
| BstV1I | GCAGC | 3 cut(s) | 143, 146, 151 |
| BstV2I | GAAGAC | 2 cut(s) | 419, 648 |
| BstX2I | RGATCY | 1 cut(s) | 78 |
| BstYI | RGATCY | 1 cut(s) | 78 |
| BsuI | GTATCC | 1 cut(s) | 659 |
| BtsCI | GGATG | 2 cut(s) | 610, 628 |
| BtsI | GCAGTG | 2 cut(s) | 371, 483 |
| BtsIMutI | CAGTG | 2 cut(s) | 371, 483 |
| BveI | ACCTGC | 1 cut(s) | 808 |
| Cac8I | GCNNGC | 3 cut(s) | 89, 141, 272 |
| CciI | TCATGA | 2 cut(s) | 396, 726 |
| CfoI | GCGC | 1 cut(s) | 139 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 685 |
| CseI | GACGC | 1 cut(s) | 305 |
| Csp6I | GTAC | 3 cut(s) | 53, 383, 796 |
| CviAII | CATG | 2 cut(s) | 397, 727 |
| CviQI | GTAC | 3 cut(s) | 53, 383, 796 |
| DdeI | CTNAG | 2 cut(s) | 93, 408 |
| DpnI | GATC | 1 cut(s) | 80 |
| DpnII | GATC | 1 cut(s) | 78 |
| Eco130I | CCWWGG | 2 cut(s) | 56, 109 |
| Eco24I | GRGCYC | 1 cut(s) | 224 |
| Eco32I | GATATC | 1 cut(s) | 265 |
| Eco47I | GGWCC | 2 cut(s) | 106, 685 |
| EcoO109I | RGGNCCY | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 812 |
| EcoRV | GATATC | 1 cut(s) | 265 |
| EcoT14I | CCWWGG | 2 cut(s) | 56, 109 |
| EcoT38I | GRGCYC | 1 cut(s) | 224 |
| ErhI | CCWWGG | 2 cut(s) | 56, 109 |
| Esp3I | CGTCTC | 1 cut(s) | 323 |
| FaeI | CATG | 2 cut(s) | 400, 730 |
| FaiI | YATR | 8 cut(s) | 209, 276, 398, 611, 629, 638, 728, 770 |
| FaqI | GGGAC | 3 cut(s) | 44, 119, 414 |
| FatI | CATG | 2 cut(s) | 396, 726 |
| FauI | CCCGC | 2 cut(s) | 19, 263 |
| Fnu4HI | GCNGC | 3 cut(s) | 132, 135, 165 |
| FokI | GGATG | 2 cut(s) | 617, 635 |
| FriOI | GRGCYC | 1 cut(s) | 224 |
| Fsp4HI | GCNGC | 3 cut(s) | 132, 135, 165 |
| FspBI | CTAG | 7 cut(s) | 57, 84, 110, 242, 698, 704, 716 |
| GlaI | GCGC | 1 cut(s) | 138 |
| GluI | GCNGC | 3 cut(s) | 132, 135, 165 |
| GsaI | CCCAGC | 1 cut(s) | 618 |
| HapII | CCGG | 2 cut(s) | 309, 332 |
| HgaI | GACGC | 1 cut(s) | 305 |
| HhaI | GCGC | 1 cut(s) | 139 |
| Hin1II | CATG | 2 cut(s) | 400, 730 |
| Hin6I | GCGC | 1 cut(s) | 137 |
| HinP1I | GCGC | 1 cut(s) | 137 |
| HincII | GTYRAC | 1 cut(s) | 231 |
| HindII | GTYRAC | 1 cut(s) | 231 |
| HindIII | AAGCTT | 2 cut(s) | 95, 198 |
| HinfI | GANTC | 4 cut(s) | 35, 245, 516, 680 |
| HpaII | CCGG | 2 cut(s) | 309, 332 |
| HphI | GGTGA | 1 cut(s) | 560 |
| Hpy166II | GTNNAC | 1 cut(s) | 231 |
| Hpy188I | TCNGA | 4 cut(s) | 183, 510, 685, 824 |
| Hpy188III | TCNNGA | 3 cut(s) | 397, 520, 727 |
| Hpy8I | GTNNAC | 1 cut(s) | 231 |
| Hpy99I | CGWCG | 1 cut(s) | 604 |
| HpyAV | CCTTC | 6 cut(s) | 211, 496, 613, 663, 730, 787 |
| HpyCH4III | ACNGT | 1 cut(s) | 647 |
| HpyCH4V | TGCA | 4 cut(s) | 47, 167, 254, 461 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 140 |
| HpyF3I | CTNAG | 2 cut(s) | 93, 408 |
| Hsp92II | CATG | 2 cut(s) | 400, 730 |
| HspAI | GCGC | 1 cut(s) | 137 |
| KpnI | GGTACC | 1 cut(s) | 56 |
| Kzo9I | GATC | 1 cut(s) | 78 |
| LmnI | GCTCC | 2 cut(s) | 497, 578 |
| Lsp1109I | GCAGC | 3 cut(s) | 143, 146, 151 |
| MaeI | CTAG | 7 cut(s) | 57, 84, 110, 242, 698, 704, 716 |
| MaeIII | GTNAC | 1 cut(s) | 478 |
| MalI | GATC | 1 cut(s) | 80 |
| MboI | GATC | 1 cut(s) | 78 |
| MboII | GAAGA | 7 cut(s) | 163, 226, 424, 563, 653, 715, 719 |
| MflI | RGATCY | 1 cut(s) | 78 |
| MhlI | GDGCHC | 1 cut(s) | 224 |
| MluCI | AATT | 5 cut(s) | 285, 524, 587, 742, 749 |
| MlyI | GAGTC | 1 cut(s) | 525 |
| MnlI | CCTC | 8 cut(s) | 121, 283, 349, 387, 463, 498, 529, 727 |
| MseI | TTAA | 2 cut(s) | 75, 441 |
| MspA1I | CMGCKG | 1 cut(s) | 270 |
| MspI | CCGG | 2 cut(s) | 309, 332 |
| MspR9I | CCNGG | 3 cut(s) | 309, 332, 814 |
| Mva1269I | GAATGC | 2 cut(s) | 167, 804 |
| MvaI | CCWGG | 1 cut(s) | 814 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 140 |
| NciI | CCSGG | 2 cut(s) | 309, 332 |
| NdeII | GATC | 1 cut(s) | 78 |
| NlaIII | CATG | 2 cut(s) | 400, 730 |
| NlaIV | GGNNCC | 3 cut(s) | 54, 107, 158 |
| NmuCI | GTSAC | 1 cut(s) | 478 |
| PagI | TCATGA | 2 cut(s) | 396, 726 |
| PctI | GAATGC | 2 cut(s) | 167, 804 |
| PfeI | GAWTC | 3 cut(s) | 35, 245, 680 |
| PkrI | GCNGC | 3 cut(s) | 133, 136, 166 |
| PleI | GAGTC | 1 cut(s) | 524 |
| PpsI | GAGTC | 1 cut(s) | 524 |
| PpuMI | RGGWCCY | 1 cut(s) | 106 |
| Psp5II | RGGWCCY | 1 cut(s) | 106 |
| Psp6I | CCWGG | 1 cut(s) | 812 |
| PspFI | CCCAGC | 1 cut(s) | 614 |
| PspGI | CCWGG | 1 cut(s) | 812 |
| PspN4I | GGNNCC | 3 cut(s) | 54, 107, 158 |
| PspPI | GGNCC | 2 cut(s) | 106, 685 |
| PspPPI | RGGWCCY | 1 cut(s) | 106 |
| PstI | CTGCAG | 1 cut(s) | 256 |
| PsuI | RGATCY | 1 cut(s) | 78 |
| RsaI | GTAC | 3 cut(s) | 54, 384, 797 |
| RsaNI | GTAC | 3 cut(s) | 53, 383, 796 |
| SaqAI | TTAA | 2 cut(s) | 75, 441 |
| SatI | GCNGC | 3 cut(s) | 132, 135, 165 |
| Sau3AI | GATC | 1 cut(s) | 78 |
| Sau96I | GGNCC | 2 cut(s) | 106, 685 |
| SchI | GAGTC | 1 cut(s) | 525 |
| ScrFI | CCNGG | 3 cut(s) | 309, 332, 814 |
| SduI | GDGCHC | 1 cut(s) | 224 |
| SfcI | CTRYAG | 3 cut(s) | 252, 582, 675 |
| SinI | GGWCC | 2 cut(s) | 106, 685 |
| SmlI | CTYRAG | 1 cut(s) | 378 |
| SmoI | CTYRAG | 1 cut(s) | 378 |
| SpeI | ACTAGT | 1 cut(s) | 697 |
| Sse9I | AATT | 5 cut(s) | 285, 524, 587, 742, 749 |
| SsiI | CCGC | 2 cut(s) | 26, 270 |
| SspMI | CTAG | 7 cut(s) | 57, 84, 110, 242, 698, 704, 716 |
| StyD4I | CCNGG | 3 cut(s) | 307, 330, 812 |
| StyI | CCWWGG | 2 cut(s) | 56, 109 |
| TaaI | ACNGT | 1 cut(s) | 647 |
| TaqI | TCGA | 2 cut(s) | 203, 599 |
| TasI | AATT | 5 cut(s) | 285, 524, 587, 742, 749 |
| TatI | WGTACW | 2 cut(s) | 382, 795 |
| TfiI | GAWTC | 3 cut(s) | 35, 245, 680 |
| Tru1I | TTAA | 2 cut(s) | 75, 441 |
| Tru9I | TTAA | 2 cut(s) | 75, 441 |
| TscAI | CASTG | 2 cut(s) | 378, 483 |
| TseFI | GTSAC | 1 cut(s) | 478 |
| TseI | GCWGC | 3 cut(s) | 131, 134, 164 |
| Tsp45I | GTSAC | 1 cut(s) | 478 |
| TspDTI | ATGAA | 3 cut(s) | 167, 227, 715 |
| TspGWI | ACGGA | 1 cut(s) | 617 |
| TspRI | CASTG | 2 cut(s) | 378, 483 |
| VpaK11BI | GGWCC | 2 cut(s) | 106, 685 |
| XmaJI | CCTAGG | 2 cut(s) | 56, 109 |
| XspI | CTAG | 7 cut(s) | 57, 84, 110, 242, 698, 704, 716 |