Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 126 |
| AatII | GACGTC | 1 cut(s) | 613 |
| Acc36I | ACCTGC | 2 cut(s) | 586, 779 |
| Acc65I | GGTACC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 1 cut(s) | 158 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 174 |
| AccI | GTMKAC | 1 cut(s) | 803 |
| AciI | CCGC | 5 cut(s) | 44, 51, 270, 605, 719 |
| AclWI | GGATC | 3 cut(s) | 76, 253, 374 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AcuI | CTGAAG | 1 cut(s) | 615 |
| AcyI | GRCGYC | 1 cut(s) | 610 |
| AfaI | GTAC | 1 cut(s) | 160 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 174, 471, 670 |
| AgeI | ACCGGT | 1 cut(s) | 99 |
| AgsI | TTSAA | 7 cut(s) | 203, 230, 349, 415, 684, 704, 796 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 521 |
| AjnI | CCWGG | 2 cut(s) | 145, 663 |
| AluBI | AGCT | 2 cut(s) | 312, 593 |
| AluI | AGCT | 2 cut(s) | 312, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 21 |
| Alw26I | GTCTC | 1 cut(s) | 809 |
| Alw44I | GTGCAC | 1 cut(s) | 17 |
| AlwI | GGATC | 3 cut(s) | 76, 253, 374 |
| AoxI | GGCC | 1 cut(s) | 115 |
| ApaLI | GTGCAC | 1 cut(s) | 17 |
| ApeKI | GCWGC | 4 cut(s) | 83, 309, 622, 769 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| AsiGI | ACCGGT | 1 cut(s) | 99 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 325 |
| Asp718I | GGTACC | 1 cut(s) | 158 |
| AspLEI | GCGC | 1 cut(s) | 409 |
| AspS9I | GGNCC | 3 cut(s) | 115, 128, 272 |
| AsuHPI | GGTGA | 2 cut(s) | 542, 679 |
| AsuNHI | GCTAGC | 1 cut(s) | 29 |
| AvaII | GGWCC | 2 cut(s) | 128, 272 |
| AxyI | CCTNAGG | 1 cut(s) | 748 |
| BaeGI | GKGCMC | 1 cut(s) | 21 |
| BanI | GGYRCC | 1 cut(s) | 158 |
| BauI | CACGAG | 1 cut(s) | 54 |
| Bbv12I | GWGCWC | 1 cut(s) | 21 |
| BbvI | GCAGC | 4 cut(s) | 95, 321, 634, 781 |
| BccI | CCATC | 6 cut(s) | 170, 311, 595, 622, 635, 718 |
| BceAI | ACGGC | 1 cut(s) | 533 |
| BciT130I | CCWGG | 2 cut(s) | 147, 665 |
| BcoDI | GTCTC | 1 cut(s) | 809 |
| BfaI | CTAG | 5 cut(s) | 30, 110, 189, 633, 850 |
| BfmI | CTRYAG | 1 cut(s) | 89 |
| BfoI | RGCGCY | 1 cut(s) | 410 |
| BfuAI | ACCTGC | 2 cut(s) | 586, 779 |
| BisI | GCNGC | 4 cut(s) | 84, 310, 623, 770 |
| BlsI | GCNGC | 4 cut(s) | 85, 311, 624, 771 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 665 |
| Bme18I | GGWCC | 2 cut(s) | 128, 272 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 521 |
| BmgT120I | GGNCC | 3 cut(s) | 115, 128, 272 |
| BmiI | GGNNCC | 2 cut(s) | 130, 160 |
| BmrFI | CCNGG | 2 cut(s) | 147, 665 |
| BmrI | ACTGGG | 1 cut(s) | 719 |
| BmsI | GCATC | 1 cut(s) | 535 |
| BmtI | GCTAGC | 1 cut(s) | 33 |
| BmuI | ACTGGG | 1 cut(s) | 719 |
| BoxI | GACNNNNGTC | 1 cut(s) | 712 |
| Bsa29I | ATCGAT | 2 cut(s) | 217, 369 |
| BsaHI | GRCGYC | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 2 cut(s) | 275, 663 |
| BsaWI | WCCGGW | 3 cut(s) | 99, 385, 447 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 174, 471, 670 |
| Bse118I | RCCGGY | 1 cut(s) | 99 |
| Bse1I | ACTGG | 1 cut(s) | 714 |
| Bse21I | CCTNAGG | 1 cut(s) | 748 |
| BseBI | CCWGG | 2 cut(s) | 147, 665 |
| BseCI | ATCGAT | 2 cut(s) | 217, 369 |
| BseDI | CCNNGG | 2 cut(s) | 275, 663 |
| BseGI | GGATG | 1 cut(s) | 824 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 174, 471, 670 |
| BseMII | CTCAG | 1 cut(s) | 762 |
| BseNI | ACTGG | 1 cut(s) | 714 |
| BseRI | GAGGAG | 1 cut(s) | 584 |
| BseSI | GKGCMC | 1 cut(s) | 21 |
| BseXI | GCAGC | 4 cut(s) | 95, 321, 634, 781 |
| BsgI | GTGCAG | 1 cut(s) | 564 |
| BshFI | GGCC | 1 cut(s) | 117 |
| BshNI | GGYRCC | 1 cut(s) | 158 |
| BshTI | ACCGGT | 1 cut(s) | 99 |
| BshVI | ATCGAT | 2 cut(s) | 217, 369 |
| BsiHKAI | GWGCWC | 1 cut(s) | 21 |
| BsiSI | CCGG | 3 cut(s) | 100, 386, 448 |
| BslFI | GGGAC | 4 cut(s) | 114, 393, 405, 621 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 174, 471, 670 |
| BsmAI | GTCTC | 1 cut(s) | 809 |
| BsmFI | GGGAC | 4 cut(s) | 114, 393, 405, 621 |
| BsnI | GGCC | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 21 |
| Bsp143I | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| BspACI | CCGC | 5 cut(s) | 44, 51, 270, 605, 719 |
| BspANI | GGCC | 1 cut(s) | 117 |
| BspCNI | CTCAG | 1 cut(s) | 761 |
| BspDI | ATCGAT | 2 cut(s) | 217, 369 |
| BspLI | GGNNCC | 2 cut(s) | 130, 160 |
| BspMAI | CTGCAG | 1 cut(s) | 93 |
| BspMI | ACCTGC | 2 cut(s) | 586, 779 |
| BspOI | GCTAGC | 1 cut(s) | 33 |
| BspPI | GGATC | 3 cut(s) | 76, 253, 374 |
| BspT107I | GGYRCC | 1 cut(s) | 158 |
| BsrFI | RCCGGY | 1 cut(s) | 99 |
| BsrI | ACTGG | 1 cut(s) | 714 |
| BssAI | RCCGGY | 1 cut(s) | 99 |
| BssECI | CCNNGG | 2 cut(s) | 275, 663 |
| BssMI | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| BssNI | GRCGYC | 1 cut(s) | 610 |
| BssSI | CACGAG | 1 cut(s) | 54 |
| BssT1I | CCWWGG | 1 cut(s) | 275 |
| Bst2BI | CACGAG | 1 cut(s) | 54 |
| Bst2UI | CCWGG | 2 cut(s) | 147, 665 |
| Bst6I | CTCTTC | 1 cut(s) | 640 |
| BstACI | GRCGYC | 1 cut(s) | 610 |
| BstC8I | GCNNGC | 5 cut(s) | 31, 93, 591, 774, 786 |
| BstDEI | CTNAG | 1 cut(s) | 748 |
| BstF5I | GGATG | 1 cut(s) | 824 |
| BstH2I | RGCGCY | 1 cut(s) | 410 |
| BstHHI | GCGC | 1 cut(s) | 409 |
| BstKTI | GATC | 5 cut(s) | 71, 217, 261, 369, 487 |
| BstMAI | GTCTC | 1 cut(s) | 809 |
| BstMBI | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 80, 92 |
| BstNI | CCWGG | 2 cut(s) | 147, 665 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 712 |
| BstSCI | CCNGG | 2 cut(s) | 145, 663 |
| BstSFI | CTRYAG | 1 cut(s) | 89 |
| BstSLI | GKGCMC | 1 cut(s) | 21 |
| BstV1I | GCAGC | 4 cut(s) | 95, 321, 634, 781 |
| BstX2I | RGATCY | 1 cut(s) | 258 |
| BstYI | RGATCY | 1 cut(s) | 258 |
| Bsu15I | ATCGAT | 2 cut(s) | 217, 369 |
| Bsu36I | CCTNAGG | 1 cut(s) | 748 |
| BsuRI | GGCC | 1 cut(s) | 117 |
| BsuTUI | ATCGAT | 2 cut(s) | 217, 369 |
| BtgZI | GCGATG | 1 cut(s) | 614 |
| BtsCI | GGATG | 1 cut(s) | 824 |
| BtsI | GCAGTG | 1 cut(s) | 86 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| BveI | ACCTGC | 2 cut(s) | 586, 779 |
| Cac8I | GCNNGC | 5 cut(s) | 31, 93, 591, 774, 786 |
| CfoI | GCGC | 1 cut(s) | 409 |
| Cfr10I | RCCGGY | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 3 cut(s) | 115, 128, 272 |
| ClaI | ATCGAT | 2 cut(s) | 217, 369 |
| Csp6I | GTAC | 1 cut(s) | 159 |
| CspAI | ACCGGT | 1 cut(s) | 99 |
| CviAII | CATG | 4 cut(s) | 208, 266, 295, 766 |
| CviQI | GTAC | 1 cut(s) | 159 |
| DdeI | CTNAG | 1 cut(s) | 748 |
| DpnI | GATC | 5 cut(s) | 70, 216, 260, 368, 486 |
| DpnII | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 126 |
| DriI | GACNNNNNGTC | 1 cut(s) | 521 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 640 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 521 |
| EarI | CTCTTC | 1 cut(s) | 640 |
| EciI | GGCGGA | 2 cut(s) | 59, 285 |
| Eco130I | CCWWGG | 1 cut(s) | 275 |
| Eco47I | GGWCC | 2 cut(s) | 128, 272 |
| Eco57I | CTGAAG | 1 cut(s) | 615 |
| Eco81I | CCTNAGG | 1 cut(s) | 748 |
| EcoRII | CCWGG | 2 cut(s) | 145, 663 |
| EcoT14I | CCWWGG | 1 cut(s) | 275 |
| ErhI | CCWWGG | 1 cut(s) | 275 |
| FaeI | CATG | 4 cut(s) | 211, 269, 298, 769 |
| FaiI | YATR | 8 cut(s) | 209, 222, 252, 267, 296, 315, 627, 767 |
| FaqI | GGGAC | 4 cut(s) | 114, 393, 405, 621 |
| FatI | CATG | 4 cut(s) | 207, 265, 294, 765 |
| FauI | CCCGC | 1 cut(s) | 598 |
| FblI | GTMKAC | 1 cut(s) | 803 |
| Fnu4HI | GCNGC | 4 cut(s) | 84, 310, 623, 770 |
| FokI | GGATG | 1 cut(s) | 811 |
| Fsp4HI | GCNGC | 4 cut(s) | 84, 310, 623, 770 |
| FspBI | CTAG | 5 cut(s) | 30, 110, 189, 633, 850 |
| GlaI | GCGC | 1 cut(s) | 408 |
| GluI | GCNGC | 4 cut(s) | 84, 310, 623, 770 |
| HaeII | RGCGCY | 1 cut(s) | 410 |
| HaeIII | GGCC | 1 cut(s) | 117 |
| HapII | CCGG | 3 cut(s) | 100, 386, 448 |
| HhaI | GCGC | 1 cut(s) | 409 |
| Hin1I | GRCGYC | 1 cut(s) | 610 |
| Hin1II | CATG | 4 cut(s) | 211, 269, 298, 769 |
| Hin6I | GCGC | 1 cut(s) | 407 |
| HinP1I | GCGC | 1 cut(s) | 407 |
| HinfI | GANTC | 7 cut(s) | 47, 349, 393, 415, 430, 522, 761 |
| HpaII | CCGG | 3 cut(s) | 100, 386, 448 |
| HphI | GGTGA | 2 cut(s) | 542, 679 |
| Hpy166II | GTNNAC | 2 cut(s) | 19, 804 |
| Hpy188I | TCNGA | 5 cut(s) | 398, 489, 515, 527, 690 |
| Hpy188III | TCNNGA | 3 cut(s) | 189, 203, 750 |
| Hpy8I | GTNNAC | 2 cut(s) | 19, 804 |
| Hpy99I | CGWCG | 1 cut(s) | 519 |
| HpyAV | CCTTC | 6 cut(s) | 44, 469, 530, 553, 664, 698 |
| HpyCH4IV | ACGT | 1 cut(s) | 610 |
| HpyCH4V | TGCA | 8 cut(s) | 19, 91, 265, 469, 581, 589, 769, 788 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 80, 92 |
| HpyF3I | CTNAG | 1 cut(s) | 748 |
| HpySE526I | ACGT | 1 cut(s) | 610 |
| Hsp92I | GRCGYC | 1 cut(s) | 610 |
| Hsp92II | CATG | 4 cut(s) | 211, 269, 298, 769 |
| HspAI | GCGC | 1 cut(s) | 407 |
| KpnI | GGTACC | 1 cut(s) | 162 |
| Kzo9I | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| Lsp1109I | GCAGC | 4 cut(s) | 95, 321, 634, 781 |
| LweI | GCATC | 1 cut(s) | 535 |
| MaeI | CTAG | 5 cut(s) | 30, 110, 189, 633, 850 |
| MaeII | ACGT | 1 cut(s) | 610 |
| MalI | GATC | 5 cut(s) | 70, 216, 260, 368, 486 |
| MboI | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| MboII | GAAGA | 4 cut(s) | 491, 494, 545, 657 |
| MfeI | CAATTG | 1 cut(s) | 584 |
| MflI | RGATCY | 1 cut(s) | 258 |
| MhlI | GDGCHC | 1 cut(s) | 21 |
| MluCI | AATT | 5 cut(s) | 140, 198, 230, 321, 584 |
| MlyI | GAGTC | 3 cut(s) | 387, 424, 531 |
| MmeI | TCCRAC | 1 cut(s) | 538 |
| MnlI | CCTC | 6 cut(s) | 48, 235, 483, 521, 562, 757 |
| MroXI | GAANNNNTTC | 1 cut(s) | 325 |
| MseI | TTAA | 2 cut(s) | 153, 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| MspA1I | CMGCKG | 1 cut(s) | 719 |
| MspI | CCGG | 3 cut(s) | 100, 386, 448 |
| MspR9I | CCNGG | 2 cut(s) | 147, 665 |
| MunI | CAATTG | 1 cut(s) | 584 |
| MvaI | CCWGG | 2 cut(s) | 147, 665 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 80, 92 |
| NdeII | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| NheI | GCTAGC | 1 cut(s) | 29 |
| NlaIII | CATG | 4 cut(s) | 211, 269, 298, 769 |
| NlaIV | GGNNCC | 2 cut(s) | 130, 160 |
| NmeAIII | GCCGAG | 1 cut(s) | 5 |
| PdmI | GAANNNNTTC | 1 cut(s) | 325 |
| PfeI | GAWTC | 4 cut(s) | 47, 349, 415, 761 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 174 |
| PinAI | ACCGGT | 1 cut(s) | 99 |
| PkrI | GCNGC | 4 cut(s) | 85, 311, 624, 771 |
| PleI | GAGTC | 3 cut(s) | 387, 424, 530 |
| PpsI | GAGTC | 3 cut(s) | 387, 424, 530 |
| PshAI | GACNNNNGTC | 1 cut(s) | 712 |
| Psp6I | CCWGG | 2 cut(s) | 145, 663 |
| PspGI | CCWGG | 2 cut(s) | 145, 663 |
| PspN4I | GGNNCC | 2 cut(s) | 130, 160 |
| PspPI | GGNCC | 3 cut(s) | 115, 128, 272 |
| PstI | CTGCAG | 1 cut(s) | 93 |
| PsuI | RGATCY | 1 cut(s) | 258 |
| RsaI | GTAC | 1 cut(s) | 160 |
| RsaNI | GTAC | 1 cut(s) | 159 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| SaqAI | TTAA | 2 cut(s) | 153, 453 |
| SatI | GCNGC | 4 cut(s) | 84, 310, 623, 770 |
| Sau3AI | GATC | 5 cut(s) | 68, 214, 258, 366, 484 |
| Sau96I | GGNCC | 3 cut(s) | 115, 128, 272 |
| SchI | GAGTC | 3 cut(s) | 387, 424, 531 |
| ScrFI | CCNGG | 2 cut(s) | 147, 665 |
| SduI | GDGCHC | 1 cut(s) | 21 |
| SfaNI | GCATC | 1 cut(s) | 535 |
| SfcI | CTRYAG | 1 cut(s) | 89 |
| SinI | GGWCC | 2 cut(s) | 128, 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| Sse9I | AATT | 5 cut(s) | 140, 198, 230, 321, 584 |
| SsiI | CCGC | 5 cut(s) | 44, 51, 270, 605, 719 |
| SspMI | CTAG | 5 cut(s) | 30, 110, 189, 633, 850 |
| StyD4I | CCNGG | 2 cut(s) | 145, 663 |
| StyI | CCWWGG | 1 cut(s) | 275 |
| TaiI | ACGT | 1 cut(s) | 613 |
| TaqI | TCGA | 3 cut(s) | 217, 369, 428 |
| TasI | AATT | 5 cut(s) | 140, 198, 230, 321, 584 |
| TfiI | GAWTC | 4 cut(s) | 47, 349, 415, 761 |
| Tru1I | TTAA | 2 cut(s) | 153, 453 |
| Tru9I | TTAA | 2 cut(s) | 153, 453 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseI | GCWGC | 4 cut(s) | 83, 309, 622, 769 |
| TspDTI | ATGAA | 1 cut(s) | 572 |
| TspRI | CASTG | 1 cut(s) | 93 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 174 |
| VneI | GTGCAC | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 2 cut(s) | 128, 272 |
| XapI | RAATTY | 1 cut(s) | 140 |
| XbaI | TCTAGA | 1 cut(s) | 188 |
| XmiI | GTMKAC | 1 cut(s) | 803 |
| XmnI | GAANNNNTTC | 1 cut(s) | 325 |
| XspI | CTAG | 5 cut(s) | 30, 110, 189, 633, 850 |
| ZraI | GACGTC | 1 cut(s) | 611 |