Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 158 |
| AccII | CGCG | 1 cut(s) | 139 |
| AciI | CCGC | 5 cut(s) | 79, 139, 270, 371, 431 |
| AclWI | GGATC | 2 cut(s) | 136, 433 |
| AcyI | GRCGYC | 1 cut(s) | 178 |
| AfaI | GTAC | 1 cut(s) | 22 |
| AfeI | AGCGCT | 2 cut(s) | 87, 261 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| AjnI | CCWGG | 3 cut(s) | 145, 362, 375 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| Alw26I | GTCTC | 3 cut(s) | 185, 197, 353 |
| AlwI | GGATC | 2 cut(s) | 136, 433 |
| Aor51HI | AGCGCT | 2 cut(s) | 87, 261 |
| AoxI | GGCC | 2 cut(s) | 272, 390 |
| ApeKI | GCWGC | 2 cut(s) | 88, 262 |
| AspLEI | GCGC | 2 cut(s) | 88, 262 |
| AspS9I | GGNCC | 3 cut(s) | 272, 373, 391 |
| AvaII | GGWCC | 1 cut(s) | 373 |
| BaeGI | GKGCMC | 1 cut(s) | 161 |
| BanI | GGYRCC | 1 cut(s) | 158 |
| BbvI | GCAGC | 2 cut(s) | 75, 249 |
| BccI | CCATC | 2 cut(s) | 311, 349 |
| BceAI | ACGGC | 1 cut(s) | 259 |
| BciT130I | CCWGG | 3 cut(s) | 147, 364, 377 |
| BclI | TGATCA | 1 cut(s) | 454 |
| BcoDI | GTCTC | 3 cut(s) | 185, 197, 353 |
| BfaI | CTAG | 1 cut(s) | 125 |
| BfmI | CTRYAG | 1 cut(s) | 283 |
| BfoI | RGCGCY | 2 cut(s) | 89, 263 |
| BisI | GCNGC | 2 cut(s) | 89, 263 |
| BlsI | GCNGC | 2 cut(s) | 90, 264 |
| Bme1390I | CCNGG | 3 cut(s) | 147, 364, 377 |
| Bme18I | GGWCC | 1 cut(s) | 373 |
| BmgT120I | GGNCC | 3 cut(s) | 272, 373, 391 |
| BmiI | GGNNCC | 2 cut(s) | 160, 342 |
| BmrFI | CCNGG | 3 cut(s) | 147, 364, 377 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 328, 360 |
| BpuEI | CTTGAG | 1 cut(s) | 167 |
| Bsa29I | ATCGAT | 1 cut(s) | 217 |
| BsaHI | GRCGYC | 1 cut(s) | 178 |
| BsaI | GGTCTC | 1 cut(s) | 353 |
| BsaJI | CCNNGG | 3 cut(s) | 146, 275, 376 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 470 |
| Bse1I | ACTGG | 3 cut(s) | 22, 107, 189 |
| Bse3DI | GCAATG | 1 cut(s) | 162 |
| BseBI | CCWGG | 3 cut(s) | 147, 364, 377 |
| BseCI | ATCGAT | 1 cut(s) | 217 |
| BseDI | CCNNGG | 3 cut(s) | 146, 275, 376 |
| BseMI | GCAATG | 1 cut(s) | 162 |
| BseMII | CTCAG | 1 cut(s) | 342 |
| BseNI | ACTGG | 3 cut(s) | 22, 107, 189 |
| BseSI | GKGCMC | 1 cut(s) | 161 |
| BseXI | GCAGC | 2 cut(s) | 75, 249 |
| Bsh1236I | CGCG | 1 cut(s) | 139 |
| BshFI | GGCC | 2 cut(s) | 274, 392 |
| BshNI | GGYRCC | 1 cut(s) | 158 |
| BshVI | ATCGAT | 1 cut(s) | 217 |
| BsiSI | CCGG | 1 cut(s) | 210 |
| BsmAI | GTCTC | 3 cut(s) | 185, 197, 353 |
| BsmBI | CGTCTC | 1 cut(s) | 185 |
| BsnI | GGCC | 2 cut(s) | 274, 392 |
| Bso31I | GGTCTC | 1 cut(s) | 353 |
| Bsp1286I | GDGCHC | 1 cut(s) | 161 |
| Bsp143I | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| BspACI | CCGC | 5 cut(s) | 79, 139, 270, 371, 431 |
| BspANI | GGCC | 2 cut(s) | 274, 392 |
| BspCNI | CTCAG | 1 cut(s) | 341 |
| BspDI | ATCGAT | 1 cut(s) | 217 |
| BspFNI | CGCG | 1 cut(s) | 139 |
| BspHI | TCATGA | 2 cut(s) | 202, 238 |
| BspLI | GGNNCC | 2 cut(s) | 160, 342 |
| BspPI | GGATC | 2 cut(s) | 136, 433 |
| BspQI | GCTCTTC | 1 cut(s) | 471 |
| BspT107I | GGYRCC | 1 cut(s) | 158 |
| BspTNI | GGTCTC | 1 cut(s) | 353 |
| BsrDI | GCAATG | 1 cut(s) | 162 |
| BsrI | ACTGG | 3 cut(s) | 22, 107, 189 |
| BssECI | CCNNGG | 3 cut(s) | 146, 275, 376 |
| BssMI | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| BssNI | GRCGYC | 1 cut(s) | 178 |
| Bst2UI | CCWGG | 3 cut(s) | 147, 364, 377 |
| Bst6I | CTCTTC | 1 cut(s) | 471 |
| BstACI | GRCGYC | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 1 cut(s) | 272 |
| BstDEI | CTNAG | 1 cut(s) | 328 |
| BstDSI | CCRYGG | 1 cut(s) | 275 |
| BstFNI | CGCG | 1 cut(s) | 139 |
| BstH2I | RGCGCY | 2 cut(s) | 89, 263 |
| BstHHI | GCGC | 2 cut(s) | 88, 262 |
| BstKTI | GATC | 6 cut(s) | 131, 174, 217, 250, 428, 457 |
| BstMAI | GTCTC | 3 cut(s) | 185, 197, 353 |
| BstMBI | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 85, 271 |
| BstNI | CCWGG | 3 cut(s) | 147, 364, 377 |
| BstSCI | CCNGG | 3 cut(s) | 145, 362, 375 |
| BstSFI | CTRYAG | 1 cut(s) | 283 |
| BstSLI | GKGCMC | 1 cut(s) | 161 |
| BstUI | CGCG | 1 cut(s) | 139 |
| BstV1I | GCAGC | 2 cut(s) | 75, 249 |
| BstX2I | RGATCY | 1 cut(s) | 425 |
| BstYI | RGATCY | 1 cut(s) | 425 |
| Bsu15I | ATCGAT | 1 cut(s) | 217 |
| BsuRI | GGCC | 2 cut(s) | 274, 392 |
| BsuTUI | ATCGAT | 1 cut(s) | 217 |
| BtgI | CCRYGG | 1 cut(s) | 275 |
| BtsIMutI | CAGTG | 1 cut(s) | 336 |
| Cac8I | GCNNGC | 1 cut(s) | 272 |
| CciI | TCATGA | 2 cut(s) | 202, 238 |
| CfoI | GCGC | 2 cut(s) | 88, 262 |
| Cfr13I | GGNCC | 3 cut(s) | 272, 373, 391 |
| ClaI | ATCGAT | 1 cut(s) | 217 |
| CseI | GACGC | 1 cut(s) | 167 |
| Csp6I | GTAC | 1 cut(s) | 21 |
| CviAII | CATG | 3 cut(s) | 203, 239, 266 |
| CviJI | RGCY | 6 cut(s) | 29, 245, 274, 327, 392, 464 |
| CviKI_1 | RGCY | 6 cut(s) | 29, 245, 274, 327, 392, 464 |
| CviQI | GTAC | 1 cut(s) | 21 |
| DdeI | CTNAG | 1 cut(s) | 328 |
| DpnI | GATC | 6 cut(s) | 130, 173, 216, 249, 427, 456 |
| DpnII | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| Eam1104I | CTCTTC | 1 cut(s) | 471 |
| EarI | CTCTTC | 1 cut(s) | 471 |
| Eco31I | GGTCTC | 1 cut(s) | 353 |
| Eco47I | GGWCC | 1 cut(s) | 373 |
| Eco47III | AGCGCT | 2 cut(s) | 87, 261 |
| EcoRII | CCWGG | 3 cut(s) | 145, 362, 375 |
| Esp3I | CGTCTC | 1 cut(s) | 185 |
| FaeI | CATG | 3 cut(s) | 206, 242, 269 |
| FaiI | YATR | 9 cut(s) | 26, 108, 110, 204, 240, 267, 285, 315, 408 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 395, 427 |
| FatI | CATG | 3 cut(s) | 202, 238, 265 |
| FauI | CCCGC | 2 cut(s) | 72, 263 |
| FbaI | TGATCA | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 263 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 263 |
| FspBI | CTAG | 1 cut(s) | 125 |
| GlaI | GCGC | 2 cut(s) | 87, 261 |
| GluI | GCNGC | 2 cut(s) | 89, 263 |
| HaeII | RGCGCY | 2 cut(s) | 89, 263 |
| HaeIII | GGCC | 2 cut(s) | 274, 392 |
| HapII | CCGG | 1 cut(s) | 210 |
| HgaI | GACGC | 1 cut(s) | 167 |
| HhaI | GCGC | 2 cut(s) | 88, 262 |
| Hin1I | GRCGYC | 1 cut(s) | 178 |
| Hin1II | CATG | 3 cut(s) | 206, 242, 269 |
| Hin6I | GCGC | 2 cut(s) | 86, 260 |
| HinP1I | GCGC | 2 cut(s) | 86, 260 |
| HinfI | GANTC | 2 cut(s) | 10, 219 |
| HpaII | CCGG | 1 cut(s) | 210 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 2 cut(s) | 203, 239 |
| HpyAV | CCTTC | 3 cut(s) | 51, 404, 469 |
| HpyCH4V | TGCA | 3 cut(s) | 7, 91, 265 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 85, 271 |
| HpyF3I | CTNAG | 1 cut(s) | 328 |
| Hsp92I | GRCGYC | 1 cut(s) | 178 |
| Hsp92II | CATG | 3 cut(s) | 206, 242, 269 |
| HspAI | GCGC | 2 cut(s) | 86, 260 |
| Ksp22I | TGATCA | 1 cut(s) | 454 |
| Kzo9I | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| LguI | GCTCTTC | 1 cut(s) | 471 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 249 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 1 cut(s) | 125 |
| MalI | GATC | 6 cut(s) | 130, 173, 216, 249, 427, 456 |
| MboI | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| MboII | GAAGA | 2 cut(s) | 364, 458 |
| MflI | RGATCY | 1 cut(s) | 425 |
| MhlI | GDGCHC | 1 cut(s) | 161 |
| MluCI | AATT | 2 cut(s) | 230, 420 |
| MlyI | GAGTC | 1 cut(s) | 4 |
| MnlI | CCTC | 6 cut(s) | 48, 64, 330, 354, 472, 475 |
| MseI | TTAA | 1 cut(s) | 413 |
| MspI | CCGG | 1 cut(s) | 210 |
| MspR9I | CCNGG | 3 cut(s) | 147, 364, 377 |
| MvaI | CCWGG | 3 cut(s) | 147, 364, 377 |
| MvnI | CGCG | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 85, 271 |
| NdeII | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| NlaIII | CATG | 3 cut(s) | 206, 242, 269 |
| NlaIV | GGNNCC | 2 cut(s) | 160, 342 |
| PagI | TCATGA | 2 cut(s) | 202, 238 |
| PciSI | GCTCTTC | 1 cut(s) | 471 |
| PfeI | GAWTC | 1 cut(s) | 219 |
| PkrI | GCNGC | 2 cut(s) | 90, 264 |
| PleI | GAGTC | 1 cut(s) | 4 |
| PpsI | GAGTC | 1 cut(s) | 4 |
| Psp6I | CCWGG | 3 cut(s) | 145, 362, 375 |
| PspGI | CCWGG | 3 cut(s) | 145, 362, 375 |
| PspN4I | GGNNCC | 2 cut(s) | 160, 342 |
| PspPI | GGNCC | 3 cut(s) | 272, 373, 391 |
| PsuI | RGATCY | 1 cut(s) | 425 |
| RsaI | GTAC | 1 cut(s) | 22 |
| RsaNI | GTAC | 1 cut(s) | 21 |
| SapI | GCTCTTC | 1 cut(s) | 471 |
| SaqAI | TTAA | 1 cut(s) | 413 |
| SatI | GCNGC | 2 cut(s) | 89, 263 |
| Sau3AI | GATC | 6 cut(s) | 128, 171, 214, 247, 425, 454 |
| Sau96I | GGNCC | 3 cut(s) | 272, 373, 391 |
| SchI | GAGTC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 3 cut(s) | 147, 364, 377 |
| SduI | GDGCHC | 1 cut(s) | 161 |
| SetI | ASST | 5 cut(s) | 75, 247, 365, 413, 444 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 283 |
| SinI | GGWCC | 1 cut(s) | 373 |
| SmlI | CTYRAG | 1 cut(s) | 182 |
| SmoI | CTYRAG | 1 cut(s) | 182 |
| Sse9I | AATT | 2 cut(s) | 230, 420 |
| SsiI | CCGC | 5 cut(s) | 79, 139, 270, 371, 431 |
| SspMI | CTAG | 1 cut(s) | 125 |
| StyD4I | CCNGG | 3 cut(s) | 145, 362, 375 |
| TaqI | TCGA | 3 cut(s) | 170, 217, 448 |
| TasI | AATT | 2 cut(s) | 230, 420 |
| TfiI | GAWTC | 1 cut(s) | 219 |
| Tru1I | TTAA | 1 cut(s) | 413 |
| Tru9I | TTAA | 1 cut(s) | 413 |
| TscAI | CASTG | 1 cut(s) | 336 |
| TseI | GCWGC | 2 cut(s) | 88, 262 |
| TspDTI | ATGAA | 4 cut(s) | 191, 223, 227, 255 |
| TspRI | CASTG | 1 cut(s) | 336 |
| VpaK11BI | GGWCC | 1 cut(s) | 373 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 61 |
| XspI | CTAG | 1 cut(s) | 125 |