Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 491 |
| AciI | CCGC | 1 cut(s) | 382 |
| AclWI | GGATC | 6 cut(s) | 35, 80, 206, 586, 597, 853 |
| AcoI | YGGCCR | 1 cut(s) | 679 |
| AcuI | CTGAAG | 1 cut(s) | 938 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 538 |
| AgsI | TTSAA | 5 cut(s) | 45, 175, 269, 430, 512 |
| AjnI | CCWGG | 2 cut(s) | 583, 715 |
| AleI | CACNNNNGTG | 1 cut(s) | 687 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 98, 130 |
| AluBI | AGCT | 4 cut(s) | 628, 662, 922, 969 |
| AluI | AGCT | 4 cut(s) | 628, 662, 922, 969 |
| Alw26I | GTCTC | 1 cut(s) | 635 |
| AlwI | GGATC | 6 cut(s) | 35, 80, 206, 586, 597, 853 |
| Ama87I | CYCGRG | 1 cut(s) | 885 |
| AoxI | GGCC | 2 cut(s) | 529, 679 |
| ApeKI | GCWGC | 3 cut(s) | 4, 497, 628 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 247 |
| AspS9I | GGNCC | 1 cut(s) | 530 |
| AsuC2I | CCSGG | 2 cut(s) | 302, 946 |
| AsuHPI | GGTGA | 3 cut(s) | 326, 532, 573 |
| AvaI | CYCGRG | 1 cut(s) | 885 |
| BalI | TGGCCA | 1 cut(s) | 681 |
| BanII | GRGCYC | 1 cut(s) | 454 |
| BbsI | GAAGAC | 1 cut(s) | 931 |
| BbvI | GCAGC | 2 cut(s) | 484, 615 |
| BccI | CCATC | 6 cut(s) | 17, 179, 199, 403, 541, 749 |
| BciT130I | CCWGG | 2 cut(s) | 585, 717 |
| BclI | TGATCA | 2 cut(s) | 331, 804 |
| BcnI | CCSGG | 2 cut(s) | 302, 946 |
| BcoDI | GTCTC | 1 cut(s) | 635 |
| BfaI | CTAG | 4 cut(s) | 438, 447, 527, 731 |
| BfmI | CTRYAG | 2 cut(s) | 498, 870 |
| BfuAI | ACCTGC | 1 cut(s) | 491 |
| BisI | GCNGC | 3 cut(s) | 5, 498, 629 |
| BlsI | GCNGC | 3 cut(s) | 6, 499, 630 |
| Bme1390I | CCNGG | 4 cut(s) | 302, 585, 717, 946 |
| BmeT110I | CYCGRG | 1 cut(s) | 885 |
| BmgT120I | GGNCC | 1 cut(s) | 530 |
| BmiI | GGNNCC | 1 cut(s) | 543 |
| BmrFI | CCNGG | 4 cut(s) | 302, 585, 717, 946 |
| BmsI | GCATC | 2 cut(s) | 394, 871 |
| BpiI | GAAGAC | 1 cut(s) | 931 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 926, 958 |
| BpmI | CTGGAG | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 3 cut(s) | 476, 947, 949 |
| BpuMI | CCSGG | 2 cut(s) | 302, 946 |
| BsaJI | CCNNGG | 6 cut(s) | 261, 301, 584, 774, 840, 945 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 538 |
| Bse1I | ACTGG | 1 cut(s) | 286 |
| BseBI | CCWGG | 2 cut(s) | 585, 717 |
| BseDI | CCNNGG | 6 cut(s) | 261, 301, 584, 774, 840, 945 |
| BseGI | GGATG | 6 cut(s) | 210, 280, 409, 760, 799, 886 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 538 |
| BseMII | CTCAG | 1 cut(s) | 800 |
| BseNI | ACTGG | 1 cut(s) | 286 |
| BseRI | GAGGAG | 4 cut(s) | 250, 386, 944, 947 |
| BseXI | GCAGC | 2 cut(s) | 484, 615 |
| BshFI | GGCC | 2 cut(s) | 531, 681 |
| BsiHKCI | CYCGRG | 1 cut(s) | 885 |
| BsiSI | CCGG | 2 cut(s) | 301, 945 |
| BslFI | GGGAC | 1 cut(s) | 100 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 23, 225, 344, 538 |
| BsmAI | GTCTC | 1 cut(s) | 635 |
| BsmFI | GGGAC | 1 cut(s) | 100 |
| BsnI | GGCC | 2 cut(s) | 531, 681 |
| BsoBI | CYCGRG | 1 cut(s) | 885 |
| Bsp1286I | GDGCHC | 1 cut(s) | 454 |
| BspACI | CCGC | 1 cut(s) | 382 |
| BspANI | GGCC | 2 cut(s) | 531, 681 |
| BspCNI | CTCAG | 1 cut(s) | 799 |
| BspLI | GGNNCC | 1 cut(s) | 543 |
| BspMAI | CTGCAG | 2 cut(s) | 502, 874 |
| BspMI | ACCTGC | 1 cut(s) | 491 |
| BspPI | GGATC | 6 cut(s) | 35, 80, 206, 586, 597, 853 |
| BsrI | ACTGG | 1 cut(s) | 286 |
| BssECI | CCNNGG | 6 cut(s) | 261, 301, 584, 774, 840, 945 |
| BssT1I | CCWWGG | 1 cut(s) | 840 |
| Bst2UI | CCWGG | 2 cut(s) | 585, 717 |
| Bst4CI | ACNGT | 4 cut(s) | 79, 166, 320, 397 |
| Bst6I | CTCTTC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 2 cut(s) | 382, 633 |
| BstDEI | CTNAG | 3 cut(s) | 10, 648, 786 |
| BstDSI | CCRYGG | 1 cut(s) | 774 |
| BstF5I | GGATG | 6 cut(s) | 210, 280, 409, 760, 799, 886 |
| BstMAI | GTCTC | 1 cut(s) | 635 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 458 |
| BstNI | CCWGG | 2 cut(s) | 585, 717 |
| BstSCI | CCNGG | 4 cut(s) | 300, 583, 715, 944 |
| BstSFI | CTRYAG | 2 cut(s) | 498, 870 |
| BstV1I | GCAGC | 2 cut(s) | 484, 615 |
| BstV2I | GAAGAC | 1 cut(s) | 931 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 689 |
| BsuRI | GGCC | 2 cut(s) | 531, 681 |
| BtgI | CCRYGG | 1 cut(s) | 774 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtsCI | GGATG | 6 cut(s) | 210, 280, 409, 760, 799, 886 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 682 |
| BveI | ACCTGC | 1 cut(s) | 491 |
| Cac8I | GCNNGC | 2 cut(s) | 382, 633 |
| Cfr13I | GGNCC | 1 cut(s) | 530 |
| CseI | GACGC | 1 cut(s) | 701 |
| CviAII | CATG | 1 cut(s) | 124 |
| DdeI | CTNAG | 3 cut(s) | 10, 648, 786 |
| EaeI | YGGCCR | 1 cut(s) | 679 |
| Eam1104I | CTCTTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 840 |
| Eco24I | GRGCYC | 1 cut(s) | 454 |
| Eco57I | CTGAAG | 1 cut(s) | 938 |
| Eco88I | CYCGRG | 1 cut(s) | 885 |
| EcoRII | CCWGG | 2 cut(s) | 583, 715 |
| EcoT14I | CCWWGG | 1 cut(s) | 840 |
| EcoT38I | GRGCYC | 1 cut(s) | 454 |
| ErhI | CCWWGG | 1 cut(s) | 840 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 8 cut(s) | 21, 57, 125, 135, 291, 569, 752, 906 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 235, 267 |
| FaqI | GGGAC | 1 cut(s) | 100 |
| FatI | CATG | 1 cut(s) | 123 |
| FauI | CCCGC | 1 cut(s) | 389 |
| FbaI | TGATCA | 2 cut(s) | 331, 804 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 498, 629 |
| FokI | GGATG | 6 cut(s) | 217, 287, 416, 767, 806, 893 |
| FriOI | GRGCYC | 1 cut(s) | 454 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 498, 629 |
| FspBI | CTAG | 4 cut(s) | 438, 447, 527, 731 |
| GluI | GCNGC | 3 cut(s) | 5, 498, 629 |
| GsuI | CTGGAG | 1 cut(s) | 83 |
| HaeIII | GGCC | 2 cut(s) | 531, 681 |
| HapII | CCGG | 2 cut(s) | 301, 945 |
| HgaI | GACGC | 1 cut(s) | 701 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HincII | GTYRAC | 1 cut(s) | 420 |
| HindII | GTYRAC | 1 cut(s) | 420 |
| HindIII | AAGCTT | 2 cut(s) | 660, 920 |
| HinfI | GANTC | 3 cut(s) | 41, 489, 766 |
| HpaII | CCGG | 2 cut(s) | 301, 945 |
| HphI | GGTGA | 3 cut(s) | 326, 532, 573 |
| Hpy166II | GTNNAC | 1 cut(s) | 420 |
| Hpy188I | TCNGA | 6 cut(s) | 105, 131, 456, 538, 789, 918 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 202, 314, 486, 926 |
| Hpy8I | GTNNAC | 1 cut(s) | 420 |
| HpyAV | CCTTC | 7 cut(s) | 219, 338, 750, 784, 820, 871, 944 |
| HpyCH4III | ACNGT | 4 cut(s) | 79, 166, 320, 397 |
| HpyCH4IV | ACGT | 1 cut(s) | 550 |
| HpyCH4V | TGCA | 3 cut(s) | 500, 609, 872 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 458 |
| HpyF3I | CTNAG | 3 cut(s) | 10, 648, 786 |
| HpySE526I | ACGT | 1 cut(s) | 550 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 2 cut(s) | 331, 804 |
| Lsp1109I | GCAGC | 2 cut(s) | 484, 615 |
| LweI | GCATC | 2 cut(s) | 394, 871 |
| MaeI | CTAG | 4 cut(s) | 438, 447, 527, 731 |
| MaeII | ACGT | 1 cut(s) | 550 |
| MaeIII | GTNAC | 5 cut(s) | 277, 314, 391, 726, 813 |
| MboII | GAAGA | 6 cut(s) | 44, 347, 418, 457, 835, 931 |
| MhlI | GDGCHC | 1 cut(s) | 454 |
| MlsI | TGGCCA | 1 cut(s) | 681 |
| MluCI | AATT | 2 cut(s) | 430, 481 |
| MluNI | TGGCCA | 1 cut(s) | 681 |
| MlyI | GAGTC | 1 cut(s) | 483 |
| Mox20I | TGGCCA | 1 cut(s) | 681 |
| MroXI | GAANNNNTTC | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 681 |
| MseI | TTAA | 3 cut(s) | 239, 573, 861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 687 |
| Msp20I | TGGCCA | 1 cut(s) | 681 |
| MspA1I | CMGCKG | 1 cut(s) | 628 |
| MspI | CCGG | 2 cut(s) | 301, 945 |
| MspR9I | CCNGG | 4 cut(s) | 302, 585, 717, 946 |
| MvaI | CCWGG | 2 cut(s) | 585, 717 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 458 |
| NciI | CCSGG | 2 cut(s) | 302, 946 |
| NlaIII | CATG | 1 cut(s) | 127 |
| NlaIV | GGNNCC | 1 cut(s) | 543 |
| NmuCI | GTSAC | 3 cut(s) | 277, 314, 813 |
| OliI | CACNNNNGTG | 1 cut(s) | 687 |
| PaeR7I | CTCGAG | 1 cut(s) | 885 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 542 |
| PdmI | GAANNNNTTC | 1 cut(s) | 247 |
| PfeI | GAWTC | 2 cut(s) | 41, 766 |
| PkrI | GCNGC | 3 cut(s) | 6, 499, 630 |
| PleI | GAGTC | 1 cut(s) | 483 |
| PpsI | GAGTC | 1 cut(s) | 483 |
| Psp6I | CCWGG | 2 cut(s) | 583, 715 |
| PspGI | CCWGG | 2 cut(s) | 583, 715 |
| PspN4I | GGNNCC | 1 cut(s) | 543 |
| PspPI | GGNCC | 1 cut(s) | 530 |
| PspXI | VCTCGAGB | 1 cut(s) | 885 |
| PstI | CTGCAG | 2 cut(s) | 502, 874 |
| PvuII | CAGCTG | 1 cut(s) | 628 |
| RseI | CAYNNNNRTG | 1 cut(s) | 687 |
| SaqAI | TTAA | 3 cut(s) | 239, 573, 861 |
| SatI | GCNGC | 3 cut(s) | 5, 498, 629 |
| Sau96I | GGNCC | 1 cut(s) | 530 |
| SchI | GAGTC | 1 cut(s) | 483 |
| ScrFI | CCNGG | 4 cut(s) | 302, 585, 717, 946 |
| SduI | GDGCHC | 1 cut(s) | 454 |
| SfaNI | GCATC | 2 cut(s) | 394, 871 |
| SfcI | CTRYAG | 2 cut(s) | 498, 870 |
| Sfr274I | CTCGAG | 1 cut(s) | 885 |
| SlaI | CTCGAG | 1 cut(s) | 885 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 687 |
| SmlI | CTYRAG | 4 cut(s) | 491, 885, 926, 964 |
| SmoI | CTYRAG | 4 cut(s) | 491, 885, 926, 964 |
| Sse9I | AATT | 2 cut(s) | 430, 481 |
| SsiI | CCGC | 1 cut(s) | 382 |
| SspMI | CTAG | 4 cut(s) | 438, 447, 527, 731 |
| StyD4I | CCNGG | 4 cut(s) | 300, 583, 715, 944 |
| StyI | CCWWGG | 1 cut(s) | 840 |
| TaaI | ACNGT | 4 cut(s) | 79, 166, 320, 397 |
| TaiI | ACGT | 1 cut(s) | 553 |
| TaqI | TCGA | 2 cut(s) | 82, 886 |
| TasI | AATT | 2 cut(s) | 430, 481 |
| TfiI | GAWTC | 2 cut(s) | 41, 766 |
| Tru1I | TTAA | 3 cut(s) | 239, 573, 861 |
| Tru9I | TTAA | 3 cut(s) | 239, 573, 861 |
| TscAI | CASTG | 2 cut(s) | 82, 682 |
| TseFI | GTSAC | 3 cut(s) | 277, 314, 813 |
| TseI | GCWGC | 3 cut(s) | 4, 497, 628 |
| Tsp45I | GTSAC | 3 cut(s) | 277, 314, 813 |
| TspDTI | ATGAA | 2 cut(s) | 44, 352 |
| TspGWI | ACGGA | 1 cut(s) | 763 |
| TspRI | CASTG | 2 cut(s) | 82, 682 |
| XhoI | CTCGAG | 1 cut(s) | 885 |
| XmnI | GAANNNNTTC | 1 cut(s) | 247 |
| XspI | CTAG | 4 cut(s) | 438, 447, 527, 731 |