Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 242 |
| AccB1I | GGYRCC | 2 cut(s) | 331, 416 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 165 |
| AclWI | GGATC | 3 cut(s) | 453, 508, 521 |
| AcoI | YGGCCR | 1 cut(s) | 405 |
| AfaI | GTAC | 1 cut(s) | 151 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 19, 115, 165, 319, 426 |
| AgeI | ACCGGT | 1 cut(s) | 544 |
| AgsI | TTSAA | 2 cut(s) | 145, 460 |
| AjnI | CCWGG | 3 cut(s) | 266, 353, 598 |
| AluBI | AGCT | 1 cut(s) | 403 |
| AluI | AGCT | 1 cut(s) | 403 |
| AlwI | GGATC | 3 cut(s) | 453, 508, 521 |
| Ama87I | CYCGRG | 1 cut(s) | 49 |
| AoxI | GGCC | 4 cut(s) | 106, 310, 351, 405 |
| ApeKI | GCWGC | 2 cut(s) | 71, 74 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| AsiGI | ACCGGT | 1 cut(s) | 544 |
| AspLEI | GCGC | 3 cut(s) | 121, 243, 483 |
| AspS9I | GGNCC | 2 cut(s) | 106, 263 |
| AsuC2I | CCSGG | 1 cut(s) | 518 |
| AsuHPI | GGTGA | 2 cut(s) | 534, 562 |
| AvaI | CYCGRG | 1 cut(s) | 49 |
| AvaII | GGWCC | 1 cut(s) | 263 |
| BalI | TGGCCA | 1 cut(s) | 407 |
| BamHI | GGATCC | 1 cut(s) | 513 |
| BanI | GGYRCC | 2 cut(s) | 331, 416 |
| BauI | CACGAG | 1 cut(s) | 56 |
| BbvCI | CCTCAGC | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 58, 86 |
| BccI | CCATC | 3 cut(s) | 37, 80, 302 |
| BceAI | ACGGC | 1 cut(s) | 93 |
| BciT130I | CCWGG | 3 cut(s) | 268, 355, 600 |
| BcnI | CCSGG | 1 cut(s) | 518 |
| BfmI | CTRYAG | 2 cut(s) | 38, 72 |
| BfoI | RGCGCY | 1 cut(s) | 122 |
| BglII | AGATCT | 1 cut(s) | 249 |
| BisI | GCNGC | 2 cut(s) | 72, 75 |
| BlsI | GCNGC | 2 cut(s) | 73, 76 |
| Bme1390I | CCNGG | 4 cut(s) | 268, 355, 518, 600 |
| Bme18I | GGWCC | 1 cut(s) | 263 |
| BmeT110I | CYCGRG | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 263 |
| BmiI | GGNNCC | 4 cut(s) | 265, 333, 418, 515 |
| BmrFI | CCNGG | 4 cut(s) | 268, 355, 518, 600 |
| BmsI | GCATC | 2 cut(s) | 187, 492 |
| Bpu10I | CCTNAGC | 1 cut(s) | 24 |
| BpuMI | CCSGG | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 3 cut(s) | 266, 354, 408 |
| BsaWI | WCCGGW | 3 cut(s) | 319, 544, 556 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 19, 115, 165, 319, 426 |
| Bse118I | RCCGGY | 1 cut(s) | 544 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| BseBI | CCWGG | 3 cut(s) | 268, 355, 600 |
| BseDI | CCNNGG | 3 cut(s) | 266, 354, 408 |
| BseGI | GGATG | 4 cut(s) | 9, 91, 202, 435 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 19, 115, 165, 319, 426 |
| BseMII | CTCAG | 2 cut(s) | 15, 328 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 2 cut(s) | 41, 341 |
| BseXI | GCAGC | 2 cut(s) | 58, 86 |
| BshFI | GGCC | 4 cut(s) | 108, 312, 353, 407 |
| BshNI | GGYRCC | 2 cut(s) | 331, 416 |
| BshTI | ACCGGT | 1 cut(s) | 544 |
| BsiHKCI | CYCGRG | 1 cut(s) | 49 |
| BsiSI | CCGG | 4 cut(s) | 320, 517, 545, 557 |
| BslFI | GGGAC | 1 cut(s) | 249 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 19, 115, 165, 319, 426 |
| BsmFI | GGGAC | 1 cut(s) | 249 |
| BsnI | GGCC | 4 cut(s) | 108, 312, 353, 407 |
| BsoBI | CYCGRG | 1 cut(s) | 49 |
| Bsp143I | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| Bsp19I | CCATGG | 1 cut(s) | 408 |
| BspANI | GGCC | 4 cut(s) | 108, 312, 353, 407 |
| BspCNI | CTCAG | 2 cut(s) | 16, 327 |
| BspHI | TCATGA | 1 cut(s) | 620 |
| BspLI | GGNNCC | 4 cut(s) | 265, 333, 418, 515 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspPI | GGATC | 3 cut(s) | 453, 508, 521 |
| BspT107I | GGYRCC | 2 cut(s) | 331, 416 |
| BsrFI | RCCGGY | 1 cut(s) | 544 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssAI | RCCGGY | 1 cut(s) | 544 |
| BssECI | CCNNGG | 3 cut(s) | 266, 354, 408 |
| BssMI | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| BssSI | CACGAG | 1 cut(s) | 56 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst2BI | CACGAG | 1 cut(s) | 56 |
| Bst2UI | CCWGG | 3 cut(s) | 268, 355, 600 |
| Bst4CI | ACNGT | 1 cut(s) | 606 |
| Bst6I | CTCTTC | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 1 cut(s) | 405 |
| BstDEI | CTNAG | 2 cut(s) | 24, 314 |
| BstDSI | CCRYGG | 1 cut(s) | 408 |
| BstF5I | GGATG | 4 cut(s) | 9, 91, 202, 435 |
| BstH2I | RGCGCY | 1 cut(s) | 122 |
| BstHHI | GCGC | 3 cut(s) | 121, 243, 483 |
| BstKTI | GATC | 5 cut(s) | 165, 179, 252, 448, 516 |
| BstMBI | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 68, 105, 125 |
| BstNI | CCWGG | 3 cut(s) | 268, 355, 600 |
| BstSCI | CCNGG | 4 cut(s) | 266, 353, 516, 598 |
| BstSFI | CTRYAG | 2 cut(s) | 38, 72 |
| BstV1I | GCAGC | 2 cut(s) | 58, 86 |
| BstX2I | RGATCY | 2 cut(s) | 249, 513 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 606 |
| BstYI | RGATCY | 2 cut(s) | 249, 513 |
| BsuRI | GGCC | 4 cut(s) | 108, 312, 353, 407 |
| BtgI | CCRYGG | 1 cut(s) | 408 |
| BtsCI | GGATG | 4 cut(s) | 9, 91, 202, 435 |
| Cac8I | GCNNGC | 1 cut(s) | 405 |
| CciI | TCATGA | 1 cut(s) | 620 |
| CfoI | GCGC | 3 cut(s) | 121, 243, 483 |
| Cfr10I | RCCGGY | 1 cut(s) | 544 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 263 |
| CseI | GACGC | 1 cut(s) | 497 |
| Csp6I | GTAC | 1 cut(s) | 150 |
| CspAI | ACCGGT | 1 cut(s) | 544 |
| CviAII | CATG | 3 cut(s) | 100, 409, 621 |
| CviQI | GTAC | 1 cut(s) | 150 |
| DdeI | CTNAG | 2 cut(s) | 24, 314 |
| DpnI | GATC | 5 cut(s) | 164, 178, 251, 447, 515 |
| DpnII | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| EaeI | YGGCCR | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 455 |
| EarI | CTCTTC | 1 cut(s) | 455 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| Eco147I | AGGCCT | 1 cut(s) | 353 |
| Eco47I | GGWCC | 1 cut(s) | 263 |
| Eco88I | CYCGRG | 1 cut(s) | 49 |
| EcoO109I | RGGNCCY | 1 cut(s) | 263 |
| EcoRII | CCWGG | 3 cut(s) | 266, 353, 598 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| FaeI | CATG | 3 cut(s) | 103, 412, 624 |
| FaiI | YATR | 6 cut(s) | 101, 287, 306, 365, 410, 622 |
| FaqI | GGGAC | 1 cut(s) | 249 |
| FatI | CATG | 3 cut(s) | 99, 408, 620 |
| Fnu4HI | GCNGC | 2 cut(s) | 72, 75 |
| FokI | GGATG | 3 cut(s) | 98, 209, 442 |
| Fsp4HI | GCNGC | 2 cut(s) | 72, 75 |
| FspI | TGCGCA | 1 cut(s) | 242 |
| GlaI | GCGC | 3 cut(s) | 120, 242, 482 |
| GluI | GCNGC | 2 cut(s) | 72, 75 |
| HaeII | RGCGCY | 1 cut(s) | 122 |
| HaeIII | GGCC | 4 cut(s) | 108, 312, 353, 407 |
| HapII | CCGG | 4 cut(s) | 320, 517, 545, 557 |
| HgaI | GACGC | 1 cut(s) | 497 |
| HhaI | GCGC | 3 cut(s) | 121, 243, 483 |
| Hin1II | CATG | 3 cut(s) | 103, 412, 624 |
| Hin6I | GCGC | 3 cut(s) | 119, 241, 481 |
| HinP1I | GCGC | 3 cut(s) | 119, 241, 481 |
| HincII | GTYRAC | 1 cut(s) | 564 |
| HindII | GTYRAC | 1 cut(s) | 564 |
| HinfI | GANTC | 1 cut(s) | 47 |
| HpaI | GTTAAC | 1 cut(s) | 564 |
| HpaII | CCGG | 4 cut(s) | 320, 517, 545, 557 |
| HphI | GGTGA | 2 cut(s) | 534, 562 |
| Hpy166II | GTNNAC | 1 cut(s) | 564 |
| Hpy188I | TCNGA | 3 cut(s) | 176, 279, 513 |
| Hpy188III | TCNNGA | 7 cut(s) | 83, 166, 180, 194, 523, 577, 621 |
| Hpy8I | GTNNAC | 1 cut(s) | 564 |
| Hpy99I | CGWCG | 1 cut(s) | 513 |
| HpyAV | CCTTC | 4 cut(s) | 227, 361, 520, 574 |
| HpyCH4III | ACNGT | 1 cut(s) | 606 |
| HpyCH4V | TGCA | 3 cut(s) | 74, 99, 200 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 68, 105, 125 |
| HpyF3I | CTNAG | 2 cut(s) | 24, 314 |
| Hsp92II | CATG | 3 cut(s) | 103, 412, 624 |
| HspAI | GCGC | 3 cut(s) | 119, 241, 481 |
| KspAI | GTTAAC | 1 cut(s) | 564 |
| Kzo9I | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| LmnI | GCTCC | 2 cut(s) | 205, 400 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 86 |
| LweI | GCATC | 2 cut(s) | 187, 492 |
| MalI | GATC | 5 cut(s) | 164, 178, 251, 447, 515 |
| MboI | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| MboII | GAAGA | 4 cut(s) | 472, 482, 485, 565 |
| MflI | RGATCY | 2 cut(s) | 249, 513 |
| MlsI | TGGCCA | 1 cut(s) | 407 |
| MluCI | AATT | 1 cut(s) | 221 |
| MluNI | TGGCCA | 1 cut(s) | 407 |
| MlyI | GAGTC | 1 cut(s) | 41 |
| MmeI | TCCRAC | 2 cut(s) | 327, 491 |
| Mox20I | TGGCCA | 1 cut(s) | 407 |
| MscI | TGGCCA | 1 cut(s) | 407 |
| MseI | TTAA | 2 cut(s) | 563, 585 |
| MslI | CAYNNNNRTG | 1 cut(s) | 488 |
| Msp20I | TGGCCA | 1 cut(s) | 407 |
| MspI | CCGG | 4 cut(s) | 320, 517, 545, 557 |
| MspR9I | CCNGG | 4 cut(s) | 268, 355, 518, 600 |
| MvaI | CCWGG | 3 cut(s) | 268, 355, 600 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 68, 105, 125 |
| NciI | CCSGG | 1 cut(s) | 518 |
| NcoI | CCATGG | 1 cut(s) | 408 |
| NdeII | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| NlaIII | CATG | 3 cut(s) | 103, 412, 624 |
| NlaIV | GGNNCC | 4 cut(s) | 265, 333, 418, 515 |
| NsbI | TGCGCA | 1 cut(s) | 242 |
| PaeR7I | CTCGAG | 1 cut(s) | 49 |
| PagI | TCATGA | 1 cut(s) | 620 |
| PceI | AGGCCT | 1 cut(s) | 353 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 165 |
| PfoI | TCCNGGA | 1 cut(s) | 598 |
| PinAI | ACCGGT | 1 cut(s) | 544 |
| PkrI | GCNGC | 2 cut(s) | 73, 76 |
| PleI | GAGTC | 1 cut(s) | 41 |
| PpsI | GAGTC | 1 cut(s) | 41 |
| PpuMI | RGGWCCY | 1 cut(s) | 263 |
| Psp5II | RGGWCCY | 1 cut(s) | 263 |
| Psp6I | CCWGG | 3 cut(s) | 266, 353, 598 |
| PspGI | CCWGG | 3 cut(s) | 266, 353, 598 |
| PspN4I | GGNNCC | 4 cut(s) | 265, 333, 418, 515 |
| PspPI | GGNCC | 2 cut(s) | 106, 263 |
| PspPPI | RGGWCCY | 1 cut(s) | 263 |
| PspXI | VCTCGAGB | 1 cut(s) | 49 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| PsuI | RGATCY | 2 cut(s) | 249, 513 |
| RsaI | GTAC | 1 cut(s) | 151 |
| RsaNI | GTAC | 1 cut(s) | 150 |
| RseI | CAYNNNNRTG | 1 cut(s) | 488 |
| SaqAI | TTAA | 2 cut(s) | 563, 585 |
| SatI | GCNGC | 2 cut(s) | 72, 75 |
| Sau3AI | GATC | 5 cut(s) | 162, 176, 249, 445, 513 |
| Sau96I | GGNCC | 2 cut(s) | 106, 263 |
| SchI | GAGTC | 1 cut(s) | 41 |
| ScrFI | CCNGG | 4 cut(s) | 268, 355, 518, 600 |
| SetI | ASST | 9 cut(s) | 33, 134, 238, 265, 333, 405, 492, 531, 585 |
| SfaNI | GCATC | 2 cut(s) | 187, 492 |
| SfcI | CTRYAG | 2 cut(s) | 38, 72 |
| Sfr274I | CTCGAG | 1 cut(s) | 49 |
| SgrAI | CRCCGGYG | 1 cut(s) | 544 |
| SinI | GGWCC | 1 cut(s) | 263 |
| SlaI | CTCGAG | 1 cut(s) | 49 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 488 |
| SmlI | CTYRAG | 1 cut(s) | 49 |
| SmoI | CTYRAG | 1 cut(s) | 49 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SseBI | AGGCCT | 1 cut(s) | 353 |
| StuI | AGGCCT | 1 cut(s) | 353 |
| StyD4I | CCNGG | 4 cut(s) | 266, 353, 516, 598 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| TaaI | ACNGT | 1 cut(s) | 606 |
| TaqI | TCGA | 3 cut(s) | 50, 439, 576 |
| TasI | AATT | 1 cut(s) | 221 |
| Tru1I | TTAA | 2 cut(s) | 563, 585 |
| Tru9I | TTAA | 2 cut(s) | 563, 585 |
| TseI | GCWGC | 2 cut(s) | 71, 74 |
| TspDTI | ATGAA | 4 cut(s) | 246, 380, 559, 609 |
| TspGWI | ACGGA | 1 cut(s) | 413 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 165 |
| VpaK11BI | GGWCC | 1 cut(s) | 263 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 254 |
| XhoI | CTCGAG | 1 cut(s) | 49 |