Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 59, 503, 512, 561 |
| AclWI | GGATC | 4 cut(s) | 7, 36, 148, 247 |
| AgsI | TTSAA | 2 cut(s) | 377, 440 |
| AjnI | CCWGG | 1 cut(s) | 344 |
| Alw21I | GWGCWC | 2 cut(s) | 54, 76 |
| Alw26I | GTCTC | 1 cut(s) | 437 |
| AlwI | GGATC | 4 cut(s) | 7, 36, 148, 247 |
| AoxI | GGCC | 1 cut(s) | 205 |
| ApeKI | GCWGC | 3 cut(s) | 509, 563, 566 |
| AspS9I | GGNCC | 1 cut(s) | 86 |
| AsuC2I | CCSGG | 2 cut(s) | 311, 543 |
| AsuHPI | GGTGA | 1 cut(s) | 325 |
| AvaII | GGWCC | 1 cut(s) | 86 |
| BanII | GRGCYC | 1 cut(s) | 560 |
| Bbv12I | GWGCWC | 2 cut(s) | 54, 76 |
| BbvI | GCAGC | 3 cut(s) | 496, 550, 553 |
| BccI | CCATC | 2 cut(s) | 125, 455 |
| BceAI | ACGGC | 1 cut(s) | 291 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 97, 131 |
| BciT130I | CCWGG | 1 cut(s) | 346 |
| BciVI | GTATCC | 1 cut(s) | 316 |
| BclI | TGATCA | 1 cut(s) | 268 |
| BcnI | CCSGG | 2 cut(s) | 311, 543 |
| BcoDI | GTCTC | 1 cut(s) | 437 |
| BfaI | CTAG | 1 cut(s) | 470 |
| BfmI | CTRYAG | 1 cut(s) | 97 |
| BfuI | GTATCC | 1 cut(s) | 316 |
| BisI | GCNGC | 4 cut(s) | 510, 513, 564, 567 |
| BlsI | GCNGC | 4 cut(s) | 511, 514, 565, 568 |
| Bme1390I | CCNGG | 3 cut(s) | 311, 346, 543 |
| Bme18I | GGWCC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 86 |
| BmiI | GGNNCC | 3 cut(s) | 87, 540, 559 |
| BmrFI | CCNGG | 3 cut(s) | 311, 346, 543 |
| BmsI | GCATC | 2 cut(s) | 10, 99 |
| BpmI | CTGGAG | 2 cut(s) | 191, 554 |
| BpuEI | CTTGAG | 1 cut(s) | 401 |
| BpuMI | CCSGG | 2 cut(s) | 311, 543 |
| BsaBI | GATNNNNATC | 1 cut(s) | 66 |
| BsaI | GGTCTC | 1 cut(s) | 437 |
| BsaJI | CCNNGG | 3 cut(s) | 79, 89, 542 |
| Bse1I | ACTGG | 2 cut(s) | 43, 200 |
| Bse8I | GATNNNNATC | 1 cut(s) | 66 |
| BseBI | CCWGG | 1 cut(s) | 346 |
| BseDI | CCNNGG | 3 cut(s) | 79, 89, 542 |
| BseGI | GGATG | 2 cut(s) | 354, 387 |
| BseJI | GATNNNNATC | 1 cut(s) | 66 |
| BseNI | ACTGG | 2 cut(s) | 43, 200 |
| BseRI | GAGGAG | 2 cut(s) | 308, 311 |
| BseXI | GCAGC | 3 cut(s) | 496, 550, 553 |
| BshFI | GGCC | 1 cut(s) | 207 |
| BsiHKAI | GWGCWC | 2 cut(s) | 54, 76 |
| BsiSI | CCGG | 2 cut(s) | 310, 542 |
| BslFI | GGGAC | 3 cut(s) | 99, 116, 559 |
| BsmAI | GTCTC | 1 cut(s) | 437 |
| BsmFI | GGGAC | 3 cut(s) | 99, 116, 559 |
| BsnI | GGCC | 1 cut(s) | 207 |
| Bso31I | GGTCTC | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 3 cut(s) | 54, 76, 560 |
| Bsp143I | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| Bsp19I | CCATGG | 1 cut(s) | 89 |
| BspACI | CCGC | 4 cut(s) | 59, 503, 512, 561 |
| BspANI | GGCC | 1 cut(s) | 207 |
| BspLI | GGNNCC | 3 cut(s) | 87, 540, 559 |
| BspPI | GGATC | 4 cut(s) | 7, 36, 148, 247 |
| BspTNI | GGTCTC | 1 cut(s) | 437 |
| BsrI | ACTGG | 2 cut(s) | 43, 200 |
| BssECI | CCNNGG | 3 cut(s) | 79, 89, 542 |
| BssMI | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| BssT1I | CCWWGG | 1 cut(s) | 89 |
| Bst2UI | CCWGG | 1 cut(s) | 346 |
| Bst4CI | ACNGT | 1 cut(s) | 162 |
| BstC8I | GCNNGC | 3 cut(s) | 197, 209, 507 |
| BstDSI | CCRYGG | 2 cut(s) | 79, 89 |
| BstF5I | GGATG | 2 cut(s) | 354, 387 |
| BstKTI | GATC | 8 cut(s) | 15, 31, 143, 237, 242, 271, 318, 387 |
| BstMAI | GTCTC | 1 cut(s) | 437 |
| BstMBI | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 502 |
| BstNI | CCWGG | 1 cut(s) | 346 |
| BstSCI | CCNGG | 3 cut(s) | 309, 344, 541 |
| BstSFI | CTRYAG | 1 cut(s) | 97 |
| BstV1I | GCAGC | 3 cut(s) | 496, 550, 553 |
| BsuI | GTATCC | 1 cut(s) | 316 |
| BsuRI | GGCC | 1 cut(s) | 207 |
| BtgI | CCRYGG | 2 cut(s) | 79, 89 |
| BtgZI | GCGATG | 1 cut(s) | 530 |
| BtsCI | GGATG | 2 cut(s) | 354, 387 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 158 |
| Cac8I | GCNNGC | 3 cut(s) | 197, 209, 507 |
| Cfr13I | GGNCC | 1 cut(s) | 86 |
| CviAII | CATG | 2 cut(s) | 90, 443 |
| CviJI | RGCY | 8 cut(s) | 195, 207, 221, 278, 456, 509, 539, 558 |
| CviKI_1 | RGCY | 8 cut(s) | 195, 207, 221, 278, 456, 509, 539, 558 |
| DpnI | GATC | 8 cut(s) | 14, 30, 142, 236, 241, 270, 317, 386 |
| DpnII | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| Eco130I | CCWWGG | 1 cut(s) | 89 |
| Eco147I | AGGCCT | 1 cut(s) | 207 |
| Eco24I | GRGCYC | 1 cut(s) | 560 |
| Eco31I | GGTCTC | 1 cut(s) | 437 |
| Eco47I | GGWCC | 1 cut(s) | 86 |
| EcoRII | CCWGG | 1 cut(s) | 344 |
| EcoT14I | CCWWGG | 1 cut(s) | 89 |
| EcoT38I | GRGCYC | 1 cut(s) | 560 |
| ErhI | CCWWGG | 1 cut(s) | 89 |
| FaeI | CATG | 2 cut(s) | 93, 446 |
| FaiI | YATR | 9 cut(s) | 91, 99, 129, 260, 399, 418, 444, 584, 589 |
| FaqI | GGGAC | 3 cut(s) | 99, 116, 559 |
| FatI | CATG | 2 cut(s) | 89, 442 |
| FbaI | TGATCA | 1 cut(s) | 268 |
| Fnu4HI | GCNGC | 4 cut(s) | 510, 513, 564, 567 |
| FokI | GGATG | 2 cut(s) | 361, 374 |
| FriOI | GRGCYC | 1 cut(s) | 560 |
| Fsp4HI | GCNGC | 4 cut(s) | 510, 513, 564, 567 |
| FspBI | CTAG | 1 cut(s) | 470 |
| GluI | GCNGC | 4 cut(s) | 510, 513, 564, 567 |
| GsuI | CTGGAG | 2 cut(s) | 191, 554 |
| HaeIII | GGCC | 1 cut(s) | 207 |
| HapII | CCGG | 2 cut(s) | 310, 542 |
| Hin1II | CATG | 2 cut(s) | 93, 446 |
| HincII | GTYRAC | 1 cut(s) | 9 |
| HindII | GTYRAC | 1 cut(s) | 9 |
| HinfI | GANTC | 6 cut(s) | 67, 166, 306, 337, 465, 551 |
| HpaII | CCGG | 2 cut(s) | 310, 542 |
| HphI | GGTGA | 1 cut(s) | 325 |
| Hpy166II | GTNNAC | 1 cut(s) | 9 |
| Hpy188I | TCNGA | 1 cut(s) | 239 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 187, 290, 391 |
| Hpy8I | GTNNAC | 1 cut(s) | 9 |
| Hpy99I | CGWCG | 2 cut(s) | 291, 333 |
| HpyAV | CCTTC | 3 cut(s) | 184, 403, 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 162 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 496 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 502 |
| Hsp92II | CATG | 2 cut(s) | 93, 446 |
| Ksp22I | TGATCA | 1 cut(s) | 268 |
| Kzo9I | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| LmnI | GCTCC | 3 cut(s) | 298, 544, 563 |
| Lsp1109I | GCAGC | 3 cut(s) | 496, 550, 553 |
| LweI | GCATC | 2 cut(s) | 10, 99 |
| MaeI | CTAG | 1 cut(s) | 470 |
| MalI | GATC | 8 cut(s) | 14, 30, 142, 236, 241, 270, 317, 386 |
| MboI | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| MboII | GAAGA | 1 cut(s) | 493 |
| MhlI | GDGCHC | 3 cut(s) | 54, 76, 560 |
| MluCI | AATT | 1 cut(s) | 424 |
| MlyI | GAGTC | 1 cut(s) | 175 |
| MmeI | TCCRAC | 1 cut(s) | 118 |
| MnlI | CCTC | 5 cut(s) | 142, 286, 289, 379, 529 |
| MspA1I | CMGCKG | 1 cut(s) | 563 |
| MspI | CCGG | 2 cut(s) | 310, 542 |
| MspR9I | CCNGG | 3 cut(s) | 311, 346, 543 |
| MvaI | CCWGG | 1 cut(s) | 346 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 502 |
| NciI | CCSGG | 2 cut(s) | 311, 543 |
| NcoI | CCATGG | 1 cut(s) | 89 |
| NdeII | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| NlaIII | CATG | 2 cut(s) | 93, 446 |
| NlaIV | GGNNCC | 3 cut(s) | 87, 540, 559 |
| PceI | AGGCCT | 1 cut(s) | 207 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 337 |
| PfeI | GAWTC | 5 cut(s) | 67, 306, 337, 465, 551 |
| PfoI | TCCNGGA | 1 cut(s) | 344 |
| PkrI | GCNGC | 4 cut(s) | 511, 514, 565, 568 |
| PleI | GAGTC | 1 cut(s) | 174 |
| PpsI | GAGTC | 1 cut(s) | 174 |
| Psp6I | CCWGG | 1 cut(s) | 344 |
| PspGI | CCWGG | 1 cut(s) | 344 |
| PspN4I | GGNNCC | 3 cut(s) | 87, 540, 559 |
| PspPI | GGNCC | 1 cut(s) | 86 |
| SatI | GCNGC | 4 cut(s) | 510, 513, 564, 567 |
| Sau3AI | GATC | 8 cut(s) | 12, 28, 140, 234, 239, 268, 315, 384 |
| Sau96I | GGNCC | 1 cut(s) | 86 |
| SchI | GAGTC | 1 cut(s) | 175 |
| ScrFI | CCNGG | 3 cut(s) | 311, 346, 543 |
| SduI | GDGCHC | 3 cut(s) | 54, 76, 560 |
| SetI | ASST | 1 cut(s) | 258 |
| SfaNI | GCATC | 2 cut(s) | 10, 99 |
| SfcI | CTRYAG | 1 cut(s) | 97 |
| SinI | GGWCC | 1 cut(s) | 86 |
| SmlI | CTYRAG | 1 cut(s) | 380 |
| SmoI | CTYRAG | 1 cut(s) | 380 |
| Sse9I | AATT | 1 cut(s) | 424 |
| SseBI | AGGCCT | 1 cut(s) | 207 |
| SsiI | CCGC | 4 cut(s) | 59, 503, 512, 561 |
| SspMI | CTAG | 1 cut(s) | 470 |
| StuI | AGGCCT | 1 cut(s) | 207 |
| StyD4I | CCNGG | 3 cut(s) | 309, 344, 541 |
| StyI | CCWWGG | 1 cut(s) | 89 |
| TaaI | ACNGT | 1 cut(s) | 162 |
| TasI | AATT | 1 cut(s) | 424 |
| TauI | GCSGC | 1 cut(s) | 515 |
| TfiI | GAWTC | 5 cut(s) | 67, 306, 337, 465, 551 |
| TscAI | CASTG | 2 cut(s) | 150, 165 |
| TseI | GCWGC | 3 cut(s) | 509, 563, 566 |
| TspGWI | ACGGA | 1 cut(s) | 563 |
| TspRI | CASTG | 2 cut(s) | 150, 165 |
| VpaK11BI | GGWCC | 1 cut(s) | 86 |
| XspI | CTAG | 1 cut(s) | 470 |