Rh5DG330300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000049
Physical Location & Seq
Reverse (-)
43563790 .. 43564560
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG330300.1

Sequence Viewer

Length: 417 bp
ATGGATGGGATGTGTGAGCTTTCTCTCTGTCTTCCTCAGAAGAATGATAGGTTGATAATCTCTCCACAGAAGAAAAAGAAGGCTGGACGGCCAAAAGGGTCCAAAAATAAGGCAAAGGTGGTCGACAGTTCTGAGGTCCTGAAGACTTCACGAGTGAAGGTTAAAGGGAGGAAACGTTTCCTCAAAATACTTGAAGCTGAGGGTATGGGGATTGATGCTCTGCCTTCTCAGGAGCATACTAAAATCATTGAAGAGGTGATGACTTCAATGGTAGAGATACCTGAGGTGGGAAAGATTGTGGGGATTGAAATGGAAGAGCAGGAGTTGGCTTCTTCTCTAGCTGCAAAGAGTCTGAATCCTGGTGAGGAGGTGATTACCTCAACTGAGGATGGGGAGACTGTTTTGATTTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.03

Weight (kDa)

6.62

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AclI AACGTT 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 4 cut(s) 194, 251, 267, 308
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 3 cut(s) 19, 197, 341
AluI AGCT 3 cut(s) 19, 197, 341
Alw26I GTCTC 1 cut(s) 389
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 99, 136
AsuHPI GGTGA 3 cut(s) 268, 374, 382
AvaII GGWCC 2 cut(s) 99, 136
AxyI CCTNAGG 1 cut(s) 282
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 2 cut(s) 23, 149
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 99, 136
BmgT120I GGNCC 2 cut(s) 99, 136
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 2 cut(s) 23, 149
Bpu10I CCTNAGC 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse21I CCTNAGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 10, 15, 394
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 6 cut(s) 50, 123, 189, 242, 273, 375
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 91
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 6 cut(s) 49, 124, 190, 241, 274, 376
BspLI GGNNCC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 128, 400
Bst6I CTCTTC 2 cut(s) 246, 309
BstDEI CTNAG 6 cut(s) 36, 132, 198, 228, 282, 384
BstF5I GGATG 3 cut(s) 10, 15, 394
BstMAI GTCTC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 2 cut(s) 23, 149
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 3 cut(s) 10, 15, 394
Cfr13I GGNCC 2 cut(s) 99, 136
CviAII CATG 1 cut(s) 414
CviJI RGCY 6 cut(s) 19, 83, 91, 197, 329, 341
CviKI_1 RGCY 6 cut(s) 19, 83, 91, 197, 329, 341
DdeI CTNAG 6 cut(s) 36, 132, 198, 228, 282, 384
EaeI YGGCCR 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 246, 309
EarI CTCTTC 2 cut(s) 246, 309
Eco47I GGWCC 2 cut(s) 99, 136
Eco57I CTGAAG 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 417
FaiI YATR 3 cut(s) 206, 237, 415
FatI CATG 1 cut(s) 413
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 3 cut(s) 17, 22, 401
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 338
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 1 cut(s) 91
Hin1II CATG 1 cut(s) 417
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 349, 355
HphI GGTGA 3 cut(s) 268, 374, 382
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 39, 133, 354
Hpy188III TCNNGA 3 cut(s) 139, 150, 230
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 73, 151, 234
HpyCH4III ACNGT 2 cut(s) 128, 400
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 344, 413
HpyF3I CTNAG 6 cut(s) 36, 132, 198, 228, 282, 384
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 417
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 69, 152, 215, 294, 305, 345, 372
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 175
MboII GAAGA 7 cut(s) 23, 52, 82, 154, 263, 324, 326
MlyI GAGTC 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
PpuMI RGGWCCY 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 99, 136
PspPPI RGGWCCY 1 cut(s) 136
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 342
Sau96I GGNCC 2 cut(s) 99, 136
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 360
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 2 cut(s) 99, 136
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 128, 400
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 123
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 99, 136
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.