Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| tRNA_bind | PF01588 | 108 - 202 | 1.1e-28 | Putative tRNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 758 |
| Acc36I | ACCTGC | 2 cut(s) | 321, 758 |
| AccII | CGCG | 2 cut(s) | 41, 43 |
| AciI | CCGC | 4 cut(s) | 225, 508, 540, 757 |
| AclI | AACGTT | 1 cut(s) | 12 |
| AcoI | YGGCCR | 2 cut(s) | 537, 601 |
| AcuI | CTGAAG | 3 cut(s) | 512, 645, 731 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 587 |
| AgsI | TTSAA | 2 cut(s) | 19, 674 |
| AjnI | CCWGG | 2 cut(s) | 497, 598 |
| AluBI | AGCT | 3 cut(s) | 365, 571, 694 |
| AluI | AGCT | 3 cut(s) | 365, 571, 694 |
| Alw26I | GTCTC | 2 cut(s) | 69, 217 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 236 |
| AoxI | GGCC | 3 cut(s) | 80, 537, 601 |
| ApeKI | GCWGC | 3 cut(s) | 5, 170, 305 |
| AspLEI | GCGC | 3 cut(s) | 41, 43, 224 |
| AspS9I | GGNCC | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 2 cut(s) | 177, 287 |
| AxyI | CCTNAGG | 2 cut(s) | 341, 585 |
| BalI | TGGCCA | 1 cut(s) | 603 |
| BbsI | GAAGAC | 1 cut(s) | 719 |
| BbvCI | CCTCAGC | 1 cut(s) | 237 |
| BbvI | GCAGC | 3 cut(s) | 17, 157, 317 |
| BccI | CCATC | 1 cut(s) | 266 |
| BceAI | ACGGC | 1 cut(s) | 95 |
| BciT130I | CCWGG | 2 cut(s) | 499, 600 |
| BclI | TGATCA | 2 cut(s) | 451, 631 |
| BcoDI | GTCTC | 2 cut(s) | 69, 217 |
| BfaI | CTAG | 1 cut(s) | 335 |
| BfmI | CTRYAG | 2 cut(s) | 421, 765 |
| BfuAI | ACCTGC | 2 cut(s) | 321, 758 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 88 |
| BglII | AGATCT | 1 cut(s) | 785 |
| BisI | GCNGC | 5 cut(s) | 6, 171, 225, 306, 540 |
| BlsI | GCNGC | 5 cut(s) | 7, 172, 226, 307, 541 |
| Bme1390I | CCNGG | 2 cut(s) | 499, 600 |
| BmgT120I | GGNCC | 1 cut(s) | 81 |
| BmrFI | CCNGG | 2 cut(s) | 499, 600 |
| BmsI | GCATC | 5 cut(s) | 166, 223, 292, 538, 735 |
| BpiI | GAAGAC | 1 cut(s) | 719 |
| Bpu10I | CCTNAGC | 2 cut(s) | 237, 740 |
| BsaAI | YACGTR | 1 cut(s) | 379 |
| BsaBI | GATNNNNATC | 1 cut(s) | 633 |
| BsaI | GGTCTC | 1 cut(s) | 217 |
| BsaJI | CCNNGG | 3 cut(s) | 77, 188, 497 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 587 |
| Bse21I | CCTNAGG | 2 cut(s) | 341, 585 |
| Bse8I | GATNNNNATC | 1 cut(s) | 633 |
| BseBI | CCWGG | 2 cut(s) | 499, 600 |
| BseDI | CCNNGG | 3 cut(s) | 77, 188, 497 |
| BseGI | GGATG | 2 cut(s) | 307, 750 |
| BseJI | GATNNNNATC | 1 cut(s) | 633 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 587 |
| BseMII | CTCAG | 2 cut(s) | 228, 576 |
| BsePI | GCGCGC | 1 cut(s) | 39 |
| BseRI | GAGGAG | 2 cut(s) | 254, 639 |
| BseXI | GCAGC | 3 cut(s) | 17, 157, 317 |
| Bsh1236I | CGCG | 2 cut(s) | 41, 43 |
| BshFI | GGCC | 3 cut(s) | 82, 539, 603 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 587 |
| BsmAI | GTCTC | 2 cut(s) | 69, 217 |
| BsmBI | CGTCTC | 1 cut(s) | 69 |
| BsmI | GAATGC | 2 cut(s) | 91, 534 |
| BsnI | GGCC | 3 cut(s) | 82, 539, 603 |
| Bso31I | GGTCTC | 1 cut(s) | 217 |
| Bsp143I | GATC | 3 cut(s) | 451, 631, 785 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspACI | CCGC | 4 cut(s) | 225, 508, 540, 757 |
| BspANI | GGCC | 3 cut(s) | 82, 539, 603 |
| BspCNI | CTCAG | 2 cut(s) | 229, 577 |
| BspFNI | CGCG | 2 cut(s) | 41, 43 |
| BspMAI | CTGCAG | 2 cut(s) | 425, 769 |
| BspMI | ACCTGC | 2 cut(s) | 321, 758 |
| BspTNI | GGTCTC | 1 cut(s) | 217 |
| BssECI | CCNNGG | 3 cut(s) | 77, 188, 497 |
| BssHII | GCGCGC | 1 cut(s) | 39 |
| BssMI | GATC | 3 cut(s) | 451, 631, 785 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 2 cut(s) | 499, 600 |
| Bst6I | CTCTTC | 1 cut(s) | 378 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 754 |
| BstBAI | YACGTR | 1 cut(s) | 379 |
| BstC8I | GCNNGC | 1 cut(s) | 41 |
| BstDEI | CTNAG | 4 cut(s) | 237, 341, 585, 740 |
| BstDSI | CCRYGG | 2 cut(s) | 77, 188 |
| BstF5I | GGATG | 2 cut(s) | 307, 750 |
| BstFNI | CGCG | 2 cut(s) | 41, 43 |
| BstHHI | GCGC | 3 cut(s) | 41, 43, 224 |
| BstKTI | GATC | 3 cut(s) | 454, 634, 788 |
| BstMAI | GTCTC | 2 cut(s) | 69, 217 |
| BstMBI | GATC | 3 cut(s) | 451, 631, 785 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 88, 176, 233, 242, 548, 577, 745, 754 |
| BstNI | CCWGG | 2 cut(s) | 499, 600 |
| BstNSI | RCATGY | 1 cut(s) | 508 |
| BstSCI | CCNGG | 2 cut(s) | 497, 598 |
| BstSFI | CTRYAG | 2 cut(s) | 421, 765 |
| BstUI | CGCG | 2 cut(s) | 41, 43 |
| BstV1I | GCAGC | 3 cut(s) | 17, 157, 317 |
| BstV2I | GAAGAC | 1 cut(s) | 719 |
| BstX2I | RGATCY | 1 cut(s) | 785 |
| BstYI | RGATCY | 1 cut(s) | 785 |
| Bsu36I | CCTNAGG | 2 cut(s) | 341, 585 |
| BsuRI | GGCC | 3 cut(s) | 82, 539, 603 |
| BtgI | CCRYGG | 2 cut(s) | 77, 188 |
| BtgZI | GCGATG | 1 cut(s) | 285 |
| BtsCI | GGATG | 2 cut(s) | 307, 750 |
| BtsI | GCAGTG | 2 cut(s) | 117, 430 |
| BtsIMutI | CAGTG | 2 cut(s) | 117, 430 |
| BveI | ACCTGC | 2 cut(s) | 321, 758 |
| Cac8I | GCNNGC | 1 cut(s) | 41 |
| CaiI | CAGNNNCTG | 1 cut(s) | 236 |
| CfoI | GCGC | 3 cut(s) | 41, 43, 224 |
| Cfr13I | GGNCC | 1 cut(s) | 81 |
| CseI | GACGC | 2 cut(s) | 32, 168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 505, 540 |
| CviAII | CATG | 5 cut(s) | 189, 348, 356, 505, 557 |
| DdeI | CTNAG | 4 cut(s) | 237, 341, 585, 740 |
| DpnI | GATC | 3 cut(s) | 453, 633, 787 |
| DpnII | GATC | 3 cut(s) | 451, 631, 785 |
| EaeI | YGGCCR | 2 cut(s) | 537, 601 |
| Eam1104I | CTCTTC | 1 cut(s) | 378 |
| EarI | CTCTTC | 1 cut(s) | 378 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco31I | GGTCTC | 1 cut(s) | 217 |
| Eco57I | CTGAAG | 3 cut(s) | 512, 645, 731 |
| Eco81I | CCTNAGG | 2 cut(s) | 341, 585 |
| EcoRII | CCWGG | 2 cut(s) | 497, 598 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| EcoT22I | ATGCAT | 1 cut(s) | 750 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| Esp3I | CGTCTC | 1 cut(s) | 69 |
| FaeI | CATG | 5 cut(s) | 192, 351, 359, 508, 560 |
| FatI | CATG | 5 cut(s) | 188, 347, 355, 504, 556 |
| FauI | CCCGC | 1 cut(s) | 501 |
| FbaI | TGATCA | 2 cut(s) | 451, 631 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 171, 225, 306, 540 |
| FokI | GGATG | 2 cut(s) | 314, 757 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 171, 225, 306, 540 |
| FspBI | CTAG | 1 cut(s) | 335 |
| GlaI | GCGC | 3 cut(s) | 40, 42, 223 |
| GluI | GCNGC | 5 cut(s) | 6, 171, 225, 306, 540 |
| HaeIII | GGCC | 3 cut(s) | 82, 539, 603 |
| HgaI | GACGC | 2 cut(s) | 32, 168 |
| HhaI | GCGC | 3 cut(s) | 41, 43, 224 |
| Hin1II | CATG | 5 cut(s) | 192, 351, 359, 508, 560 |
| Hin6I | GCGC | 3 cut(s) | 39, 41, 222 |
| HinP1I | GCGC | 3 cut(s) | 39, 41, 222 |
| HincII | GTYRAC | 1 cut(s) | 391 |
| HindII | GTYRAC | 1 cut(s) | 391 |
| HinfI | GANTC | 4 cut(s) | 164, 368, 414, 670 |
| HphI | GGTGA | 2 cut(s) | 177, 287 |
| Hpy166II | GTNNAC | 2 cut(s) | 391, 593 |
| Hpy188I | TCNGA | 6 cut(s) | 48, 398, 492, 547, 625, 711 |
| Hpy188III | TCNNGA | 2 cut(s) | 461, 584 |
| Hpy8I | GTNNAC | 2 cut(s) | 391, 593 |
| HpyCH4IV | ACGT | 2 cut(s) | 12, 378 |
| HpyCH4V | TGCA | 5 cut(s) | 305, 423, 700, 748, 767 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 88, 176, 233, 242, 548, 577, 745, 754 |
| HpyF3I | CTNAG | 4 cut(s) | 237, 341, 585, 740 |
| HpySE526I | ACGT | 2 cut(s) | 12, 378 |
| Hsp92II | CATG | 5 cut(s) | 192, 351, 359, 508, 560 |
| HspAI | GCGC | 3 cut(s) | 39, 41, 222 |
| Ksp22I | TGATCA | 2 cut(s) | 451, 631 |
| Kzo9I | GATC | 3 cut(s) | 451, 631, 785 |
| LmnI | GCTCC | 1 cut(s) | 691 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 157, 317 |
| LweI | GCATC | 5 cut(s) | 166, 223, 292, 538, 735 |
| MaeI | CTAG | 1 cut(s) | 335 |
| MaeII | ACGT | 2 cut(s) | 12, 378 |
| MalI | GATC | 3 cut(s) | 453, 633, 787 |
| MboI | GATC | 3 cut(s) | 451, 631, 785 |
| MboII | GAAGA | 5 cut(s) | 210, 213, 395, 638, 724 |
| MflI | RGATCY | 1 cut(s) | 785 |
| MlsI | TGGCCA | 1 cut(s) | 603 |
| MluCI | AATT | 1 cut(s) | 436 |
| MluNI | TGGCCA | 1 cut(s) | 603 |
| Mox20I | TGGCCA | 1 cut(s) | 603 |
| Mph1103I | ATGCAT | 1 cut(s) | 750 |
| MscI | TGGCCA | 1 cut(s) | 603 |
| MslI | CAYNNNNRTG | 2 cut(s) | 187, 561 |
| Msp20I | TGGCCA | 1 cut(s) | 603 |
| MspR9I | CCNGG | 2 cut(s) | 499, 600 |
| Mva1269I | GAATGC | 2 cut(s) | 91, 534 |
| MvaI | CCWGG | 2 cut(s) | 499, 600 |
| MvnI | CGCG | 2 cut(s) | 41, 43 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 88, 176, 233, 242, 548, 577, 745, 754 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeII | GATC | 3 cut(s) | 451, 631, 785 |
| NlaIII | CATG | 5 cut(s) | 192, 351, 359, 508, 560 |
| NsiI | ATGCAT | 1 cut(s) | 750 |
| NspI | RCATGY | 1 cut(s) | 508 |
| PaqCI | CACCTGC | 1 cut(s) | 758 |
| PauI | GCGCGC | 1 cut(s) | 39 |
| PctI | GAATGC | 2 cut(s) | 91, 534 |
| PfeI | GAWTC | 4 cut(s) | 164, 368, 414, 670 |
| PkrI | GCNGC | 5 cut(s) | 7, 172, 226, 307, 541 |
| Ppu21I | YACGTR | 1 cut(s) | 379 |
| Psp1406I | AACGTT | 1 cut(s) | 12 |
| Psp6I | CCWGG | 2 cut(s) | 497, 598 |
| PspGI | CCWGG | 2 cut(s) | 497, 598 |
| PspPI | GGNCC | 1 cut(s) | 81 |
| PstI | CTGCAG | 2 cut(s) | 425, 769 |
| PstNI | CAGNNNCTG | 1 cut(s) | 236 |
| PsuI | RGATCY | 1 cut(s) | 785 |
| PteI | GCGCGC | 1 cut(s) | 39 |
| RseI | CAYNNNNRTG | 2 cut(s) | 187, 561 |
| SatI | GCNGC | 5 cut(s) | 6, 171, 225, 306, 540 |
| Sau3AI | GATC | 3 cut(s) | 451, 631, 785 |
| Sau96I | GGNCC | 1 cut(s) | 81 |
| ScrFI | CCNGG | 2 cut(s) | 499, 600 |
| SfaNI | GCATC | 5 cut(s) | 166, 223, 292, 538, 735 |
| SfcI | CTRYAG | 2 cut(s) | 421, 765 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 187, 561 |
| Sse9I | AATT | 1 cut(s) | 436 |
| SsiI | CCGC | 4 cut(s) | 225, 508, 540, 757 |
| SspMI | CTAG | 1 cut(s) | 335 |
| StyD4I | CCNGG | 2 cut(s) | 497, 598 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaiI | ACGT | 2 cut(s) | 15, 381 |
| TasI | AATT | 1 cut(s) | 436 |
| TauI | GCSGC | 2 cut(s) | 227, 542 |
| TfiI | GAWTC | 4 cut(s) | 164, 368, 414, 670 |
| TscAI | CASTG | 2 cut(s) | 124, 430 |
| TseI | GCWGC | 3 cut(s) | 5, 170, 305 |
| TspGWI | ACGGA | 1 cut(s) | 51 |
| TspRI | CASTG | 2 cut(s) | 124, 430 |
| XceI | RCATGY | 1 cut(s) | 508 |
| XspI | CTAG | 1 cut(s) | 335 |
| Zsp2I | ATGCAT | 1 cut(s) | 750 |