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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 89 |
| AccII | CGCG | 1 cut(s) | 44 |
| AciI | CCGC | 2 cut(s) | 87, 182 |
| AcuI | CTGAAG | 1 cut(s) | 224 |
| AcyI | GRCGYC | 1 cut(s) | 593 |
| AfaI | GTAC | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 407 |
| AgsI | TTSAA | 3 cut(s) | 75, 361, 680 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 585 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 374, 406 |
| AluBI | AGCT | 3 cut(s) | 162, 526, 530 |
| AluI | AGCT | 3 cut(s) | 162, 526, 530 |
| Alw26I | GTCTC | 1 cut(s) | 593 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 38 |
| Ama87I | CYCGRG | 1 cut(s) | 531 |
| AoxI | GGCC | 2 cut(s) | 609, 663 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 386 |
| AspLEI | GCGC | 1 cut(s) | 32 |
| AsuC2I | CCSGG | 2 cut(s) | 379, 408 |
| AsuHPI | GGTGA | 2 cut(s) | 226, 279 |
| AsuNHI | GCTAGC | 1 cut(s) | 526 |
| AvaI | CYCGRG | 1 cut(s) | 531 |
| BanI | GGYRCC | 1 cut(s) | 89 |
| BbsI | GAAGAC | 2 cut(s) | 502, 584 |
| BbvI | GCAGC | 1 cut(s) | 120 |
| BccI | CCATC | 3 cut(s) | 253, 419, 484 |
| BcnI | CCSGG | 2 cut(s) | 379, 408 |
| BcoDI | GTCTC | 1 cut(s) | 593 |
| BfaI | CTAG | 5 cut(s) | 159, 179, 188, 527, 651 |
| BfmI | CTRYAG | 1 cut(s) | 603 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| BmcAI | AGTACT | 1 cut(s) | 220 |
| Bme1390I | CCNGG | 2 cut(s) | 379, 408 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 585 |
| BmeT110I | CYCGRG | 1 cut(s) | 531 |
| BmiI | GGNNCC | 1 cut(s) | 91 |
| BmrFI | CCNGG | 2 cut(s) | 379, 408 |
| BmrI | ACTGGG | 1 cut(s) | 57 |
| BmsI | GCATC | 1 cut(s) | 137 |
| BmtI | GCTAGC | 1 cut(s) | 530 |
| BmuI | ACTGGG | 1 cut(s) | 57 |
| BpiI | GAAGAC | 2 cut(s) | 502, 584 |
| BpuMI | CCSGG | 2 cut(s) | 379, 408 |
| BsaHI | GRCGYC | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 4 cut(s) | 6, 105, 141, 666 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 407 |
| Bse1I | ACTGG | 1 cut(s) | 52 |
| BseDI | CCNNGG | 4 cut(s) | 6, 105, 141, 666 |
| BseGI | GGATG | 3 cut(s) | 250, 307, 430 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BseMII | CTCAG | 1 cut(s) | 588 |
| BseNI | ACTGG | 1 cut(s) | 52 |
| BseRI | GAGGAG | 1 cut(s) | 659 |
| BseXI | GCAGC | 1 cut(s) | 120 |
| BsgI | GTGCAG | 1 cut(s) | 119 |
| Bsh1236I | CGCG | 1 cut(s) | 44 |
| BshFI | GGCC | 2 cut(s) | 611, 665 |
| BshNI | GGYRCC | 1 cut(s) | 89 |
| BsiHKCI | CYCGRG | 1 cut(s) | 531 |
| BsiSI | CCGG | 2 cut(s) | 378, 407 |
| BslFI | GGGAC | 1 cut(s) | 423 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BsmAI | GTCTC | 1 cut(s) | 593 |
| BsmFI | GGGAC | 1 cut(s) | 423 |
| BsnI | GGCC | 2 cut(s) | 611, 665 |
| BsoBI | CYCGRG | 1 cut(s) | 531 |
| Bsp143I | GATC | 1 cut(s) | 99 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| Bsp68I | TCGCGA | 1 cut(s) | 44 |
| BspACI | CCGC | 2 cut(s) | 87, 182 |
| BspANI | GGCC | 2 cut(s) | 611, 665 |
| BspCNI | CTCAG | 1 cut(s) | 589 |
| BspFNI | CGCG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 1 cut(s) | 91 |
| BspMAI | CTGCAG | 1 cut(s) | 607 |
| BspOI | GCTAGC | 1 cut(s) | 530 |
| BspQI | GCTCTTC | 1 cut(s) | 402 |
| BspT107I | GGYRCC | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 52 |
| BssECI | CCNNGG | 4 cut(s) | 6, 105, 141, 666 |
| BssMI | GATC | 1 cut(s) | 99 |
| BssNI | GRCGYC | 1 cut(s) | 593 |
| BssT1I | CCWWGG | 3 cut(s) | 6, 105, 141 |
| Bst6I | CTCTTC | 1 cut(s) | 402 |
| BstACI | GRCGYC | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 1 cut(s) | 528 |
| BstDEI | CTNAG | 2 cut(s) | 163, 597 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 3 cut(s) | 250, 307, 430 |
| BstFNI | CGCG | 1 cut(s) | 44 |
| BstHHI | GCGC | 1 cut(s) | 32 |
| BstKTI | GATC | 1 cut(s) | 102 |
| BstMAI | GTCTC | 1 cut(s) | 593 |
| BstMBI | GATC | 1 cut(s) | 99 |
| BstSCI | CCNGG | 2 cut(s) | 377, 406 |
| BstSFI | CTRYAG | 1 cut(s) | 603 |
| BstUI | CGCG | 1 cut(s) | 44 |
| BstV1I | GCAGC | 1 cut(s) | 120 |
| BstV2I | GAAGAC | 2 cut(s) | 502, 584 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 13, 148 |
| BsuRI | GGCC | 2 cut(s) | 611, 665 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| BtgZI | GCGATG | 1 cut(s) | 114 |
| BtsCI | GGATG | 3 cut(s) | 250, 307, 430 |
| BtuMI | TCGCGA | 1 cut(s) | 44 |
| Cac8I | GCNNGC | 1 cut(s) | 528 |
| CaiI | CAGNNNCTG | 1 cut(s) | 38 |
| CfoI | GCGC | 1 cut(s) | 32 |
| CseI | GACGC | 1 cut(s) | 582 |
| Csp6I | GTAC | 1 cut(s) | 219 |
| CviAII | CATG | 1 cut(s) | 106 |
| CviQI | GTAC | 1 cut(s) | 219 |
| DdeI | CTNAG | 2 cut(s) | 163, 597 |
| DpnI | GATC | 1 cut(s) | 101 |
| DpnII | GATC | 1 cut(s) | 99 |
| DriI | GACNNNNNGTC | 1 cut(s) | 585 |
| Eam1104I | CTCTTC | 1 cut(s) | 402 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 585 |
| EarI | CTCTTC | 1 cut(s) | 402 |
| Eco130I | CCWWGG | 3 cut(s) | 6, 105, 141 |
| Eco32I | GATATC | 1 cut(s) | 471 |
| Eco57I | CTGAAG | 1 cut(s) | 224 |
| Eco88I | CYCGRG | 1 cut(s) | 531 |
| EcoRV | GATATC | 1 cut(s) | 471 |
| EcoT14I | CCWWGG | 3 cut(s) | 6, 105, 141 |
| EcoT22I | ATGCAT | 1 cut(s) | 199 |
| ErhI | CCWWGG | 3 cut(s) | 6, 105, 141 |
| FaeI | CATG | 1 cut(s) | 109 |
| FaiI | YATR | 6 cut(s) | 107, 242, 251, 299, 450, 585 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 374, 406 |
| FaqI | GGGAC | 1 cut(s) | 423 |
| FatI | CATG | 1 cut(s) | 105 |
| FauI | CCCGC | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FokI | GGATG | 3 cut(s) | 257, 314, 437 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| FspBI | CTAG | 5 cut(s) | 159, 179, 188, 527, 651 |
| GlaI | GCGC | 1 cut(s) | 31 |
| GluI | GCNGC | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 611, 665 |
| HapII | CCGG | 2 cut(s) | 378, 407 |
| HgaI | GACGC | 1 cut(s) | 582 |
| HhaI | GCGC | 1 cut(s) | 32 |
| Hin1I | GRCGYC | 1 cut(s) | 593 |
| Hin1II | CATG | 1 cut(s) | 109 |
| Hin6I | GCGC | 1 cut(s) | 30 |
| HinP1I | GCGC | 1 cut(s) | 30 |
| HinfI | GANTC | 5 cut(s) | 365, 411, 541, 580, 698 |
| HpaII | CCGG | 2 cut(s) | 378, 407 |
| HphI | GGTGA | 2 cut(s) | 226, 279 |
| Hpy188I | TCNGA | 4 cut(s) | 444, 468, 567, 598 |
| Hpy188III | TCNNGA | 5 cut(s) | 43, 320, 401, 533, 545 |
| HpyAV | CCTTC | 5 cut(s) | 113, 294, 346, 496, 674 |
| HpyCH4IV | ACGT | 1 cut(s) | 562 |
| HpyCH4V | TGCA | 4 cut(s) | 136, 197, 605, 637 |
| HpyF3I | CTNAG | 2 cut(s) | 163, 597 |
| HpySE526I | ACGT | 1 cut(s) | 562 |
| Hsp92I | GRCGYC | 1 cut(s) | 593 |
| Hsp92II | CATG | 1 cut(s) | 109 |
| HspAI | GCGC | 1 cut(s) | 30 |
| Kzo9I | GATC | 1 cut(s) | 99 |
| LguI | GCTCTTC | 1 cut(s) | 402 |
| LmnI | GCTCC | 1 cut(s) | 286 |
| Lsp1109I | GCAGC | 1 cut(s) | 120 |
| LweI | GCATC | 1 cut(s) | 137 |
| MaeI | CTAG | 5 cut(s) | 159, 179, 188, 527, 651 |
| MaeII | ACGT | 1 cut(s) | 562 |
| MaeIII | GTNAC | 1 cut(s) | 310 |
| MalI | GATC | 1 cut(s) | 101 |
| MboI | GATC | 1 cut(s) | 99 |
| MfeI | CAATTG | 1 cut(s) | 417 |
| MluCI | AATT | 2 cut(s) | 208, 417 |
| MlyI | GAGTC | 4 cut(s) | 405, 535, 574, 692 |
| MnlI | CCTC | 9 cut(s) | 238, 243, 415, 601, 616, 637, 640, 676, 688 |
| Mph1103I | ATGCAT | 1 cut(s) | 199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 386 |
| MseI | TTAA | 1 cut(s) | 431 |
| MslI | CAYNNNNRTG | 2 cut(s) | 453, 623 |
| MspI | CCGG | 2 cut(s) | 378, 407 |
| MspR9I | CCNGG | 2 cut(s) | 379, 408 |
| MunI | CAATTG | 1 cut(s) | 417 |
| MvnI | CGCG | 1 cut(s) | 44 |
| NciI | CCSGG | 2 cut(s) | 379, 408 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeII | GATC | 1 cut(s) | 99 |
| NheI | GCTAGC | 1 cut(s) | 526 |
| NlaIII | CATG | 1 cut(s) | 109 |
| NlaIV | GGNNCC | 1 cut(s) | 91 |
| NmuCI | GTSAC | 1 cut(s) | 310 |
| NruI | TCGCGA | 1 cut(s) | 44 |
| NsiI | ATGCAT | 1 cut(s) | 199 |
| PciSI | GCTCTTC | 1 cut(s) | 402 |
| PdmI | GAANNNNTTC | 1 cut(s) | 386 |
| PfeI | GAWTC | 1 cut(s) | 365 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| PleI | GAGTC | 4 cut(s) | 405, 535, 574, 692 |
| PpsI | GAGTC | 4 cut(s) | 405, 535, 574, 692 |
| PspN4I | GGNNCC | 1 cut(s) | 91 |
| PstI | CTGCAG | 1 cut(s) | 607 |
| PstNI | CAGNNNCTG | 1 cut(s) | 38 |
| RruI | TCGCGA | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 220 |
| RsaNI | GTAC | 1 cut(s) | 219 |
| RseI | CAYNNNNRTG | 2 cut(s) | 453, 623 |
| SapI | GCTCTTC | 1 cut(s) | 402 |
| SaqAI | TTAA | 1 cut(s) | 431 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 1 cut(s) | 99 |
| ScaI | AGTACT | 1 cut(s) | 220 |
| SchI | GAGTC | 4 cut(s) | 405, 535, 574, 692 |
| ScrFI | CCNGG | 2 cut(s) | 379, 408 |
| SetI | ASST | 8 cut(s) | 164, 178, 292, 357, 528, 532, 565, 627 |
| SfaNI | GCATC | 1 cut(s) | 137 |
| SfcI | CTRYAG | 1 cut(s) | 603 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 453, 623 |
| Sse9I | AATT | 2 cut(s) | 208, 417 |
| SsiI | CCGC | 2 cut(s) | 87, 182 |
| SspMI | CTAG | 5 cut(s) | 159, 179, 188, 527, 651 |
| StyD4I | CCNGG | 2 cut(s) | 377, 406 |
| StyI | CCWWGG | 3 cut(s) | 6, 105, 141 |
| TaiI | ACGT | 1 cut(s) | 565 |
| TaqI | TCGA | 1 cut(s) | 373 |
| TaqII | GACCGA | 1 cut(s) | 514 |
| TasI | AATT | 2 cut(s) | 208, 417 |
| TatI | WGTACW | 1 cut(s) | 218 |
| TfiI | GAWTC | 1 cut(s) | 365 |
| Tru1I | TTAA | 1 cut(s) | 431 |
| Tru9I | TTAA | 1 cut(s) | 431 |
| TseFI | GTSAC | 1 cut(s) | 310 |
| TseI | GCWGC | 1 cut(s) | 133 |
| Tsp45I | GTSAC | 1 cut(s) | 310 |
| TspDTI | ATGAA | 3 cut(s) | 266, 378, 699 |
| TspGWI | ACGGA | 1 cut(s) | 364 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 112 |
| XmnI | GAANNNNTTC | 1 cut(s) | 386 |
| XspI | CTAG | 5 cut(s) | 159, 179, 188, 527, 651 |
| ZrmI | AGTACT | 1 cut(s) | 220 |
| Zsp2I | ATGCAT | 1 cut(s) | 199 |