Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 191 |
| Acc36I | ACCTGC | 1 cut(s) | 191 |
| AccB1I | GGYRCC | 1 cut(s) | 331 |
| AciI | CCGC | 1 cut(s) | 509 |
| AclWI | GGATC | 3 cut(s) | 436, 453, 495 |
| AcuI | CTGAAG | 2 cut(s) | 27, 298 |
| AfaI | GTAC | 1 cut(s) | 524 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 484, 515 |
| AflIII | ACRYGT | 1 cut(s) | 342 |
| AgsI | TTSAA | 6 cut(s) | 24, 83, 145, 194, 221, 340 |
| AjnI | CCWGG | 1 cut(s) | 525 |
| AluBI | AGCT | 1 cut(s) | 77 |
| AluI | AGCT | 1 cut(s) | 77 |
| AlwI | GGATC | 3 cut(s) | 436, 453, 495 |
| AoxI | GGCC | 2 cut(s) | 117, 475 |
| ApeKI | GCWGC | 2 cut(s) | 71, 74 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AspS9I | GGNCC | 2 cut(s) | 118, 263 |
| AsuHPI | GGTGA | 2 cut(s) | 215, 376 |
| AvaII | GGWCC | 1 cut(s) | 263 |
| BanI | GGYRCC | 1 cut(s) | 331 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 296, 328 |
| BbvI | GCAGC | 2 cut(s) | 58, 86 |
| BccI | CCATC | 4 cut(s) | 10, 302, 427, 436 |
| BceAI | ACGGC | 2 cut(s) | 414, 496 |
| BciT130I | CCWGG | 1 cut(s) | 527 |
| BfaI | CTAG | 2 cut(s) | 65, 129 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BfuAI | ACCTGC | 1 cut(s) | 191 |
| BisI | GCNGC | 2 cut(s) | 72, 75 |
| BlsI | GCNGC | 2 cut(s) | 73, 76 |
| Bme1390I | CCNGG | 1 cut(s) | 527 |
| Bme18I | GGWCC | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 2 cut(s) | 118, 263 |
| BmiI | GGNNCC | 3 cut(s) | 120, 264, 333 |
| BmrFI | CCNGG | 1 cut(s) | 527 |
| Bsa29I | ATCGAT | 1 cut(s) | 431 |
| BsaJI | CCNNGG | 2 cut(s) | 54, 266 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 484, 515 |
| BseBI | CCWGG | 1 cut(s) | 527 |
| BseCI | ATCGAT | 1 cut(s) | 431 |
| BseDI | CCNNGG | 2 cut(s) | 54, 266 |
| BseGI | GGATG | 2 cut(s) | 50, 447 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 484, 515 |
| BseMII | CTCAG | 1 cut(s) | 187 |
| BseRI | GAGGAG | 1 cut(s) | 341 |
| BseXI | GCAGC | 2 cut(s) | 58, 86 |
| BshFI | GGCC | 2 cut(s) | 119, 477 |
| BshNI | GGYRCC | 1 cut(s) | 331 |
| BshVI | ATCGAT | 1 cut(s) | 431 |
| BslFI | GGGAC | 1 cut(s) | 384 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 484, 515 |
| BsmFI | GGGAC | 1 cut(s) | 384 |
| BsnI | GGCC | 2 cut(s) | 119, 477 |
| Bsp143I | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| BspACI | CCGC | 1 cut(s) | 509 |
| BspANI | GGCC | 2 cut(s) | 119, 477 |
| BspCNI | CTCAG | 1 cut(s) | 186 |
| BspDI | ATCGAT | 1 cut(s) | 431 |
| BspLI | GGNNCC | 3 cut(s) | 120, 264, 333 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspMI | ACCTGC | 1 cut(s) | 191 |
| BspPI | GGATC | 3 cut(s) | 436, 453, 495 |
| BspT107I | GGYRCC | 1 cut(s) | 331 |
| BssECI | CCNNGG | 2 cut(s) | 54, 266 |
| BssMI | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| BssT1I | CCWWGG | 1 cut(s) | 266 |
| Bst2UI | CCWGG | 1 cut(s) | 527 |
| BstDEI | CTNAG | 1 cut(s) | 173 |
| BstDSI | CCRYGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 2 cut(s) | 50, 447 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 5 cut(s) | 179, 431, 448, 472, 490 |
| BstMBI | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstNI | CCWGG | 1 cut(s) | 527 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 1 cut(s) | 525 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 2 cut(s) | 58, 86 |
| Bsu15I | ATCGAT | 1 cut(s) | 431 |
| BsuRI | GGCC | 2 cut(s) | 119, 477 |
| BsuTUI | ATCGAT | 1 cut(s) | 431 |
| BtgI | CCRYGG | 1 cut(s) | 54 |
| BtsCI | GGATG | 2 cut(s) | 50, 447 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 1 cut(s) | 243 |
| BveI | ACCTGC | 1 cut(s) | 191 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Cfr13I | GGNCC | 2 cut(s) | 118, 263 |
| ClaI | ATCGAT | 1 cut(s) | 431 |
| CseI | GACGC | 2 cut(s) | 206, 408 |
| Csp6I | GTAC | 1 cut(s) | 523 |
| CviAII | CATG | 3 cut(s) | 257, 343, 354 |
| CviJI | RGCY | 9 cut(s) | 5, 71, 77, 97, 119, 127, 172, 312, 477 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 71, 77, 97, 119, 127, 172, 312, 477 |
| CviQI | GTAC | 1 cut(s) | 523 |
| DdeI | CTNAG | 1 cut(s) | 173 |
| DpnI | GATC | 5 cut(s) | 178, 430, 447, 471, 489 |
| DpnII | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| EciI | GGCGGA | 1 cut(s) | 498 |
| Eco130I | CCWWGG | 1 cut(s) | 266 |
| Eco47I | GGWCC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 2 cut(s) | 27, 298 |
| EcoO109I | RGGNCCY | 1 cut(s) | 263 |
| EcoRII | CCWGG | 1 cut(s) | 525 |
| EcoT14I | CCWWGG | 1 cut(s) | 266 |
| ErhI | CCWWGG | 1 cut(s) | 266 |
| FaeI | CATG | 3 cut(s) | 260, 346, 357 |
| FaiI | YATR | 8 cut(s) | 166, 258, 279, 287, 306, 344, 355, 521 |
| FaqI | GGGAC | 1 cut(s) | 384 |
| FatI | CATG | 3 cut(s) | 256, 342, 353 |
| Fnu4HI | GCNGC | 2 cut(s) | 72, 75 |
| FokI | GGATG | 2 cut(s) | 37, 454 |
| Fsp4HI | GCNGC | 2 cut(s) | 72, 75 |
| FspBI | CTAG | 2 cut(s) | 65, 129 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 2 cut(s) | 72, 75 |
| HaeIII | GGCC | 2 cut(s) | 119, 477 |
| HgaI | GACGC | 2 cut(s) | 206, 408 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 3 cut(s) | 260, 346, 357 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HinfI | GANTC | 4 cut(s) | 20, 31, 41, 47 |
| HphI | GGTGA | 2 cut(s) | 215, 376 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 46, 176 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 194, 439, 491 |
| Hpy99I | CGWCG | 1 cut(s) | 517 |
| HpyAV | CCTTC | 2 cut(s) | 361, 524 |
| HpyCH4V | TGCA | 1 cut(s) | 74 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 1 cut(s) | 173 |
| Hsp92II | CATG | 3 cut(s) | 260, 346, 357 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| LmnI | GCTCC | 1 cut(s) | 416 |
| LpnPI | CCDG | 5 cut(s) | 86, 186, 305, 424, 512 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 86 |
| MaeI | CTAG | 2 cut(s) | 65, 129 |
| MalI | GATC | 5 cut(s) | 178, 430, 447, 471, 489 |
| MboI | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| MluCI | AATT | 1 cut(s) | 221 |
| MlyI | GAGTC | 2 cut(s) | 25, 41 |
| MmeI | TCCRAC | 2 cut(s) | 85, 327 |
| MnlI | CCTC | 5 cut(s) | 162, 319, 322, 467, 478 |
| MseI | TTAA | 1 cut(s) | 186 |
| MspR9I | CCNGG | 1 cut(s) | 527 |
| MvaI | CCWGG | 1 cut(s) | 527 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NdeII | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| NlaIII | CATG | 3 cut(s) | 260, 346, 357 |
| NlaIV | GGNNCC | 3 cut(s) | 120, 264, 333 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PaqCI | CACCTGC | 1 cut(s) | 191 |
| PciI | ACATGT | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 469 |
| PfeI | GAWTC | 2 cut(s) | 20, 41 |
| PkrI | GCNGC | 2 cut(s) | 73, 76 |
| PleI | GAGTC | 2 cut(s) | 25, 41 |
| PpsI | GAGTC | 2 cut(s) | 25, 41 |
| PpuMI | RGGWCCY | 1 cut(s) | 263 |
| PscI | ACATGT | 1 cut(s) | 342 |
| Psp5II | RGGWCCY | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 525 |
| PspGI | CCWGG | 1 cut(s) | 525 |
| PspN4I | GGNNCC | 3 cut(s) | 120, 264, 333 |
| PspPI | GGNCC | 2 cut(s) | 118, 263 |
| PspPPI | RGGWCCY | 1 cut(s) | 263 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| RsaI | GTAC | 1 cut(s) | 524 |
| RsaNI | GTAC | 1 cut(s) | 523 |
| SaqAI | TTAA | 1 cut(s) | 186 |
| SatI | GCNGC | 2 cut(s) | 72, 75 |
| Sau3AI | GATC | 5 cut(s) | 176, 428, 445, 469, 487 |
| Sau96I | GGNCC | 2 cut(s) | 118, 263 |
| SchI | GAGTC | 2 cut(s) | 25, 41 |
| ScrFI | CCNGG | 1 cut(s) | 527 |
| SetI | ASST | 5 cut(s) | 79, 205, 333, 528, 535 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SinI | GGWCC | 1 cut(s) | 263 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SsiI | CCGC | 1 cut(s) | 509 |
| SspI | AATATT | 1 cut(s) | 190 |
| SspMI | CTAG | 2 cut(s) | 65, 129 |
| StyD4I | CCNGG | 1 cut(s) | 525 |
| StyI | CCWWGG | 1 cut(s) | 266 |
| TaqI | TCGA | 3 cut(s) | 431, 472, 502 |
| TasI | AATT | 1 cut(s) | 221 |
| TfiI | GAWTC | 2 cut(s) | 20, 41 |
| Tru1I | TTAA | 1 cut(s) | 186 |
| Tru9I | TTAA | 1 cut(s) | 186 |
| TscAI | CASTG | 1 cut(s) | 243 |
| TseI | GCWGC | 2 cut(s) | 71, 74 |
| TspDTI | ATGAA | 1 cut(s) | 246 |
| TspGWI | ACGGA | 3 cut(s) | 43, 366, 478 |
| TspRI | CASTG | 1 cut(s) | 243 |
| VpaK11BI | GGWCC | 1 cut(s) | 263 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XspI | CTAG | 2 cut(s) | 65, 129 |