Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 68, 71, 359 |
| AclWI | GGATC | 1 cut(s) | 712 |
| AcsI | RAATTY | 1 cut(s) | 533 |
| AcyI | GRCGYC | 1 cut(s) | 166 |
| AfaI | GTAC | 4 cut(s) | 517, 738, 832, 844 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 337, 338, 727 |
| AgeI | ACCGGT | 1 cut(s) | 373 |
| AgsI | TTSAA | 6 cut(s) | 142, 186, 230, 533, 551, 614 |
| AjnI | CCWGG | 2 cut(s) | 125, 263 |
| AluBI | AGCT | 1 cut(s) | 634 |
| AluI | AGCT | 1 cut(s) | 634 |
| Alw21I | GWGCWC | 1 cut(s) | 149 |
| Alw26I | GTCTC | 3 cut(s) | 54, 173, 591 |
| AlwI | GGATC | 1 cut(s) | 712 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 600, 637 |
| Ama87I | CYCGRG | 3 cut(s) | 42, 133, 643 |
| AoxI | GGCC | 2 cut(s) | 450, 604 |
| ApeKI | GCWGC | 1 cut(s) | 634 |
| ApoI | RAATTY | 1 cut(s) | 533 |
| AsiGI | ACCGGT | 1 cut(s) | 373 |
| AsiSI | GCGATCGC | 1 cut(s) | 205 |
| AspS9I | GGNCC | 3 cut(s) | 116, 260, 451 |
| AsuC2I | CCSGG | 3 cut(s) | 134, 135, 509 |
| AsuHPI | GGTGA | 3 cut(s) | 308, 592, 727 |
| AvaI | CYCGRG | 3 cut(s) | 42, 133, 643 |
| AvaII | GGWCC | 2 cut(s) | 116, 260 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 822 |
| BanII | GRGCYC | 2 cut(s) | 317, 814 |
| Bbv12I | GWGCWC | 1 cut(s) | 149 |
| BbvI | GCAGC | 1 cut(s) | 621 |
| BccI | CCATC | 4 cut(s) | 299, 304, 492, 703 |
| BciT130I | CCWGG | 2 cut(s) | 127, 265 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcnI | CCSGG | 3 cut(s) | 134, 135, 509 |
| BcoDI | GTCTC | 3 cut(s) | 54, 173, 591 |
| BfaI | CTAG | 1 cut(s) | 12 |
| BfmI | CTRYAG | 1 cut(s) | 271 |
| BglII | AGATCT | 2 cut(s) | 173, 348 |
| BisI | GCNGC | 3 cut(s) | 69, 72, 635 |
| BlsI | GCNGC | 3 cut(s) | 70, 73, 636 |
| Bme1390I | CCNGG | 5 cut(s) | 127, 134, 135, 265, 509 |
| Bme18I | GGWCC | 2 cut(s) | 116, 260 |
| BmeT110I | CYCGRG | 3 cut(s) | 42, 133, 643 |
| BmgT120I | GGNCC | 3 cut(s) | 116, 260, 451 |
| BmiI | GGNNCC | 3 cut(s) | 131, 262, 811 |
| BmrFI | CCNGG | 5 cut(s) | 127, 134, 135, 265, 509 |
| BmsI | GCATC | 3 cut(s) | 513, 610, 666 |
| BpuMI | CCSGG | 3 cut(s) | 134, 135, 509 |
| BsaHI | GRCGYC | 1 cut(s) | 166 |
| BsaJI | CCNNGG | 2 cut(s) | 133, 263 |
| BsaWI | WCCGGW | 3 cut(s) | 237, 373, 553 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 337, 338, 727 |
| Bse118I | RCCGGY | 1 cut(s) | 373 |
| Bse1I | ACTGG | 2 cut(s) | 95, 217 |
| BseBI | CCWGG | 2 cut(s) | 127, 265 |
| BseDI | CCNNGG | 2 cut(s) | 133, 263 |
| BseGI | GGATG | 3 cut(s) | 315, 528, 697 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 337, 338, 727 |
| BseMII | CTCAG | 2 cut(s) | 184, 837 |
| BseNI | ACTGG | 2 cut(s) | 95, 217 |
| BseRI | GAGGAG | 3 cut(s) | 482, 485, 701 |
| BseXI | GCAGC | 1 cut(s) | 621 |
| BsgI | GTGCAG | 1 cut(s) | 776 |
| Bsh1285I | CGRYCG | 1 cut(s) | 205 |
| BshFI | GGCC | 2 cut(s) | 452, 606 |
| BshTI | ACCGGT | 1 cut(s) | 373 |
| BsiEI | CGRYCG | 1 cut(s) | 205 |
| BsiHKAI | GWGCWC | 1 cut(s) | 149 |
| BsiHKCI | CYCGRG | 3 cut(s) | 42, 133, 643 |
| BsiSI | CCGG | 5 cut(s) | 134, 238, 374, 509, 554 |
| BslFI | GGGAC | 3 cut(s) | 246, 314, 642 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 337, 338, 727 |
| BsmAI | GTCTC | 3 cut(s) | 54, 173, 591 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmFI | GGGAC | 3 cut(s) | 246, 314, 642 |
| BsnI | GGCC | 2 cut(s) | 452, 606 |
| BsoBI | CYCGRG | 3 cut(s) | 42, 133, 643 |
| Bsp1286I | GDGCHC | 3 cut(s) | 149, 317, 814 |
| Bsp1407I | TGTACA | 1 cut(s) | 515 |
| Bsp143I | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| BspACI | CCGC | 3 cut(s) | 68, 71, 359 |
| BspANI | GGCC | 2 cut(s) | 452, 606 |
| BspCNI | CTCAG | 2 cut(s) | 183, 838 |
| BspLI | GGNNCC | 3 cut(s) | 131, 262, 811 |
| BspPI | GGATC | 1 cut(s) | 712 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BsrFI | RCCGGY | 1 cut(s) | 373 |
| BsrGI | TGTACA | 1 cut(s) | 515 |
| BsrI | ACTGG | 2 cut(s) | 95, 217 |
| BssAI | RCCGGY | 1 cut(s) | 373 |
| BssECI | CCNNGG | 2 cut(s) | 133, 263 |
| BssMI | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| BssNI | GRCGYC | 1 cut(s) | 166 |
| Bst2UI | CCWGG | 2 cut(s) | 127, 265 |
| Bst4CI | ACNGT | 2 cut(s) | 602, 754 |
| Bst6I | CTCTTC | 2 cut(s) | 218, 255 |
| BstACI | GRCGYC | 1 cut(s) | 166 |
| BstAUI | TGTACA | 1 cut(s) | 515 |
| BstDEI | CTNAG | 2 cut(s) | 170, 846 |
| BstEII | GGTNACC | 1 cut(s) | 369 |
| BstF5I | GGATG | 3 cut(s) | 315, 528, 697 |
| BstKTI | GATC | 5 cut(s) | 176, 205, 351, 445, 720 |
| BstMAI | GTCTC | 3 cut(s) | 54, 173, 591 |
| BstMBI | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| BstMCI | CGRYCG | 1 cut(s) | 205 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstNI | CCWGG | 2 cut(s) | 127, 265 |
| BstPI | GGTNACC | 1 cut(s) | 369 |
| BstSCI | CCNGG | 5 cut(s) | 125, 132, 133, 263, 507 |
| BstSFI | CTRYAG | 1 cut(s) | 271 |
| BstV1I | GCAGC | 1 cut(s) | 621 |
| BstX2I | RGATCY | 2 cut(s) | 173, 348 |
| BstYI | RGATCY | 2 cut(s) | 173, 348 |
| BsuRI | GGCC | 2 cut(s) | 452, 606 |
| BtsCI | GGATG | 3 cut(s) | 315, 528, 697 |
| BtsIMutI | CAGTG | 1 cut(s) | 88 |
| CaiI | CAGNNNCTG | 2 cut(s) | 600, 637 |
| Cfr10I | RCCGGY | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 3 cut(s) | 116, 260, 451 |
| Cfr9I | CCCGGG | 1 cut(s) | 133 |
| CseI | GACGC | 2 cut(s) | 155, 780 |
| CsiI | ACCWGGT | 1 cut(s) | 125 |
| Csp6I | GTAC | 4 cut(s) | 516, 737, 831, 843 |
| CspAI | ACCGGT | 1 cut(s) | 373 |
| CviAII | CATG | 7 cut(s) | 245, 254, 283, 519, 770, 788, 827 |
| CviJI | RGCY | 9 cut(s) | 5, 36, 74, 315, 414, 452, 606, 634, 812 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 36, 74, 315, 414, 452, 606, 634, 812 |
| CviQI | GTAC | 4 cut(s) | 516, 737, 831, 843 |
| DdeI | CTNAG | 2 cut(s) | 170, 846 |
| DpnI | GATC | 5 cut(s) | 175, 204, 350, 444, 719 |
| DpnII | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| Eam1104I | CTCTTC | 2 cut(s) | 218, 255 |
| EarI | CTCTTC | 2 cut(s) | 218, 255 |
| Eco24I | GRGCYC | 2 cut(s) | 317, 814 |
| Eco47I | GGWCC | 2 cut(s) | 116, 260 |
| Eco88I | CYCGRG | 3 cut(s) | 42, 133, 643 |
| Eco91I | GGTNACC | 1 cut(s) | 369 |
| EcoO65I | GGTNACC | 1 cut(s) | 369 |
| EcoRII | CCWGG | 2 cut(s) | 125, 263 |
| EcoT22I | ATGCAT | 1 cut(s) | 828 |
| EcoT38I | GRGCYC | 2 cut(s) | 317, 814 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FaeI | CATG | 7 cut(s) | 248, 257, 286, 522, 773, 791, 830 |
| FaqI | GGGAC | 3 cut(s) | 246, 314, 642 |
| FatI | CATG | 7 cut(s) | 244, 253, 282, 518, 769, 787, 826 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 72, 635 |
| FokI | GGATG | 3 cut(s) | 322, 535, 704 |
| FriOI | GRGCYC | 2 cut(s) | 317, 814 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 72, 635 |
| FspBI | CTAG | 1 cut(s) | 12 |
| GluI | GCNGC | 3 cut(s) | 69, 72, 635 |
| HaeIII | GGCC | 2 cut(s) | 452, 606 |
| HapII | CCGG | 5 cut(s) | 134, 238, 374, 509, 554 |
| HgaI | GACGC | 2 cut(s) | 155, 780 |
| Hin1I | GRCGYC | 1 cut(s) | 166 |
| Hin1II | CATG | 7 cut(s) | 248, 257, 286, 522, 773, 791, 830 |
| HinfI | GANTC | 5 cut(s) | 138, 241, 433, 480, 641 |
| HpaII | CCGG | 5 cut(s) | 134, 238, 374, 509, 554 |
| HphI | GGTGA | 3 cut(s) | 308, 592, 727 |
| Hpy188I | TCNGA | 4 cut(s) | 173, 387, 489, 652 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy99I | CGWCG | 1 cut(s) | 507 |
| HpyAV | CCTTC | 3 cut(s) | 464, 571, 577 |
| HpyCH4III | ACNGT | 2 cut(s) | 602, 754 |
| HpyCH4V | TGCA | 6 cut(s) | 79, 594, 679, 757, 769, 826 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 2 cut(s) | 170, 846 |
| Hsp92I | GRCGYC | 1 cut(s) | 166 |
| Hsp92II | CATG | 7 cut(s) | 248, 257, 286, 522, 773, 791, 830 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 2 cut(s) | 472, 809 |
| Lsp1109I | GCAGC | 1 cut(s) | 621 |
| LweI | GCATC | 3 cut(s) | 513, 610, 666 |
| MabI | ACCWGGT | 1 cut(s) | 125 |
| MaeI | CTAG | 1 cut(s) | 12 |
| MaeIII | GTNAC | 3 cut(s) | 369, 745, 792 |
| MalI | GATC | 5 cut(s) | 175, 204, 350, 444, 719 |
| MboI | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| MboII | GAAGA | 3 cut(s) | 205, 242, 242 |
| MflI | RGATCY | 2 cut(s) | 173, 348 |
| MhlI | GDGCHC | 3 cut(s) | 149, 317, 814 |
| MluCI | AATT | 1 cut(s) | 533 |
| MlyI | GAGTC | 1 cut(s) | 635 |
| MnlI | CCTC | 8 cut(s) | 316, 359, 460, 463, 657, 675, 679, 682 |
| Mph1103I | ATGCAT | 1 cut(s) | 828 |
| MseI | TTAA | 1 cut(s) | 821 |
| MspA1I | CMGCKG | 1 cut(s) | 634 |
| MspI | CCGG | 5 cut(s) | 134, 238, 374, 509, 554 |
| MspR9I | CCNGG | 5 cut(s) | 127, 134, 135, 265, 509 |
| MvaI | CCWGG | 2 cut(s) | 127, 265 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NciI | CCSGG | 3 cut(s) | 134, 135, 509 |
| NdeII | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| NlaIII | CATG | 7 cut(s) | 248, 257, 286, 522, 773, 791, 830 |
| NlaIV | GGNNCC | 3 cut(s) | 131, 262, 811 |
| NmuCI | GTSAC | 1 cut(s) | 792 |
| NsiI | ATGCAT | 1 cut(s) | 828 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 4 cut(s) | 138, 241, 433, 480 |
| PinAI | ACCGGT | 1 cut(s) | 373 |
| PkrI | GCNGC | 3 cut(s) | 70, 73, 636 |
| Ple19I | CGATCG | 1 cut(s) | 205 |
| PleI | GAGTC | 1 cut(s) | 635 |
| PpsI | GAGTC | 1 cut(s) | 635 |
| Psp6I | CCWGG | 2 cut(s) | 125, 263 |
| PspEI | GGTNACC | 1 cut(s) | 369 |
| PspGI | CCWGG | 2 cut(s) | 125, 263 |
| PspN4I | GGNNCC | 3 cut(s) | 131, 262, 811 |
| PspPI | GGNCC | 3 cut(s) | 116, 260, 451 |
| PstNI | CAGNNNCTG | 2 cut(s) | 600, 637 |
| PsuI | RGATCY | 2 cut(s) | 173, 348 |
| PvuI | CGATCG | 1 cut(s) | 205 |
| PvuII | CAGCTG | 1 cut(s) | 634 |
| RgaI | GCGATCGC | 1 cut(s) | 205 |
| RsaI | GTAC | 4 cut(s) | 517, 738, 832, 844 |
| RsaNI | GTAC | 4 cut(s) | 516, 737, 831, 843 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 1 cut(s) | 821 |
| SatI | GCNGC | 3 cut(s) | 69, 72, 635 |
| Sau3AI | GATC | 5 cut(s) | 173, 202, 348, 442, 717 |
| Sau96I | GGNCC | 3 cut(s) | 116, 260, 451 |
| SchI | GAGTC | 1 cut(s) | 635 |
| ScrFI | CCNGG | 5 cut(s) | 127, 134, 135, 265, 509 |
| SduI | GDGCHC | 3 cut(s) | 149, 317, 814 |
| SetI | ASST | 8 cut(s) | 121, 131, 228, 298, 582, 588, 636, 732 |
| SexAI | ACCWGGT | 1 cut(s) | 125 |
| SfaAI | GCGATCGC | 1 cut(s) | 205 |
| SfaNI | GCATC | 3 cut(s) | 513, 610, 666 |
| SfcI | CTRYAG | 1 cut(s) | 271 |
| SgfI | GCGATCGC | 1 cut(s) | 205 |
| SinI | GGWCC | 2 cut(s) | 116, 260 |
| SmaI | CCCGGG | 1 cut(s) | 135 |
| Sse9I | AATT | 1 cut(s) | 533 |
| SsiI | CCGC | 3 cut(s) | 68, 71, 359 |
| SspMI | CTAG | 1 cut(s) | 12 |
| StyD4I | CCNGG | 5 cut(s) | 125, 132, 133, 263, 507 |
| TaaI | ACNGT | 2 cut(s) | 602, 754 |
| TasI | AATT | 1 cut(s) | 533 |
| TatI | WGTACW | 1 cut(s) | 515 |
| TauI | GCSGC | 2 cut(s) | 71, 74 |
| TfiI | GAWTC | 4 cut(s) | 138, 241, 433, 480 |
| Tru1I | TTAA | 1 cut(s) | 821 |
| Tru9I | TTAA | 1 cut(s) | 821 |
| TscAI | CASTG | 1 cut(s) | 95 |
| TseFI | GTSAC | 1 cut(s) | 792 |
| TseI | GCWGC | 1 cut(s) | 634 |
| Tsp45I | GTSAC | 1 cut(s) | 792 |
| TspDTI | ATGAA | 1 cut(s) | 242 |
| TspMI | CCCGGG | 1 cut(s) | 133 |
| TspRI | CASTG | 1 cut(s) | 95 |
| VpaK11BI | GGWCC | 2 cut(s) | 116, 260 |
| XapI | RAATTY | 1 cut(s) | 533 |
| XmaI | CCCGGG | 1 cut(s) | 133 |
| XspI | CTAG | 1 cut(s) | 12 |
| Zsp2I | ATGCAT | 1 cut(s) | 828 |