Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 430 |
| Acc36I | ACCTGC | 2 cut(s) | 31, 430 |
| Acc65I | GGTACC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 2 cut(s) | 127, 158 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 174 |
| AccBSI | CCGCTC | 1 cut(s) | 217 |
| AciI | CCGC | 3 cut(s) | 37, 217, 698 |
| AclI | AACGTT | 1 cut(s) | 871 |
| AclWI | GGATC | 3 cut(s) | 102, 462, 522 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 545 |
| AdeI | CACNNNGTG | 1 cut(s) | 830 |
| AfaI | GTAC | 3 cut(s) | 107, 160, 730 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 174 |
| AgsI | TTSAA | 5 cut(s) | 154, 203, 230, 349, 545 |
| AjnI | CCWGG | 2 cut(s) | 145, 530 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 767, 799 |
| AluBI | AGCT | 5 cut(s) | 464, 571, 676, 757, 802 |
| AluI | AGCT | 5 cut(s) | 464, 571, 676, 757, 802 |
| Alw26I | GTCTC | 3 cut(s) | 303, 329, 353 |
| AlwI | GGATC | 3 cut(s) | 102, 462, 522 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| Ama87I | CYCGRG | 2 cut(s) | 11, 65 |
| AoxI | GGCC | 3 cut(s) | 3, 7, 190 |
| ApeKI | GCWGC | 5 cut(s) | 80, 83, 740, 833, 836 |
| ApoI | RAATTY | 1 cut(s) | 545 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 328, 360 |
| Asp718I | GGTACC | 1 cut(s) | 158 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 3 cut(s) | 70, 89, 224 |
| AvaI | CYCGRG | 2 cut(s) | 11, 65 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| BaeGI | GKGCMC | 1 cut(s) | 252 |
| BanI | GGYRCC | 2 cut(s) | 127, 158 |
| BbsI | GAAGAC | 1 cut(s) | 374 |
| BbvI | GCAGC | 5 cut(s) | 67, 95, 752, 820, 823 |
| BccI | CCATC | 4 cut(s) | 170, 311, 349, 631 |
| BciT130I | CCWGG | 2 cut(s) | 147, 532 |
| BclI | TGATCA | 1 cut(s) | 657 |
| BcoDI | GTCTC | 3 cut(s) | 303, 329, 353 |
| BfaI | CTAG | 3 cut(s) | 299, 434, 827 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuAI | ACCTGC | 2 cut(s) | 31, 430 |
| BisI | GCNGC | 7 cut(s) | 38, 81, 84, 699, 741, 834, 837 |
| BlsI | GCNGC | 7 cut(s) | 39, 82, 85, 700, 742, 835, 838 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 532 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmeT110I | CYCGRG | 2 cut(s) | 11, 65 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmiI | GGNNCC | 3 cut(s) | 129, 160, 273 |
| BmrFI | CCNGG | 2 cut(s) | 147, 532 |
| BmsI | GCATC | 8 cut(s) | 38, 61, 187, 196, 285, 622, 698, 799 |
| BpiI | GAAGAC | 1 cut(s) | 374 |
| BpmI | CTGGAG | 1 cut(s) | 537 |
| BsaJI | CCNNGG | 3 cut(s) | 64, 275, 840 |
| BsaWI | WCCGGW | 1 cut(s) | 331 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 698, 728 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 174 |
| Bse118I | RCCGGY | 1 cut(s) | 5 |
| Bse1I | ACTGG | 1 cut(s) | 554 |
| BseBI | CCWGG | 2 cut(s) | 147, 532 |
| BseDI | CCNNGG | 3 cut(s) | 64, 275, 840 |
| BseGI | GGATG | 2 cut(s) | 76, 814 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 174 |
| BseMII | CTCAG | 1 cut(s) | 196 |
| BseNI | ACTGG | 1 cut(s) | 554 |
| BseRI | GAGGAG | 1 cut(s) | 686 |
| BseSI | GKGCMC | 1 cut(s) | 252 |
| BseXI | GCAGC | 5 cut(s) | 67, 95, 752, 820, 823 |
| BshFI | GGCC | 3 cut(s) | 5, 9, 192 |
| BshNI | GGYRCC | 2 cut(s) | 127, 158 |
| BsiHKCI | CYCGRG | 2 cut(s) | 11, 65 |
| BsiSI | CCGG | 3 cut(s) | 6, 332, 520 |
| BslFI | GGGAC | 1 cut(s) | 129 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 174 |
| BsmAI | GTCTC | 3 cut(s) | 303, 329, 353 |
| BsmBI | CGTCTC | 1 cut(s) | 329 |
| BsmFI | GGGAC | 1 cut(s) | 129 |
| BsnI | GGCC | 3 cut(s) | 5, 9, 192 |
| BsoBI | CYCGRG | 2 cut(s) | 11, 65 |
| Bsp1286I | GDGCHC | 1 cut(s) | 252 |
| Bsp143I | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| BspACI | CCGC | 3 cut(s) | 37, 217, 698 |
| BspANI | GGCC | 3 cut(s) | 5, 9, 192 |
| BspCNI | CTCAG | 1 cut(s) | 195 |
| BspLI | GGNNCC | 3 cut(s) | 129, 160, 273 |
| BspMAI | CTGCAG | 1 cut(s) | 85 |
| BspMI | ACCTGC | 2 cut(s) | 31, 430 |
| BspPI | GGATC | 3 cut(s) | 102, 462, 522 |
| BspQI | GCTCTTC | 1 cut(s) | 477 |
| BspT107I | GGYRCC | 2 cut(s) | 127, 158 |
| BsrBI | CCGCTC | 1 cut(s) | 217 |
| BsrFI | RCCGGY | 1 cut(s) | 5 |
| BsrI | ACTGG | 1 cut(s) | 554 |
| BssAI | RCCGGY | 1 cut(s) | 5 |
| BssECI | CCNNGG | 3 cut(s) | 64, 275, 840 |
| BssMI | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| BssT1I | CCWWGG | 2 cut(s) | 275, 840 |
| Bst2UI | CCWGG | 2 cut(s) | 147, 532 |
| Bst4CI | ACNGT | 3 cut(s) | 340, 724, 733 |
| Bst6I | CTCTTC | 1 cut(s) | 477 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 80 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 139 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstEII | GGTNACC | 1 cut(s) | 58 |
| BstF5I | GGATG | 2 cut(s) | 76, 814 |
| BstKTI | GATC | 6 cut(s) | 97, 188, 457, 530, 660, 768 |
| BstMAI | GTCTC | 3 cut(s) | 303, 329, 353 |
| BstMBI | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 80, 134, 568, 695, 842 |
| BstNI | CCWGG | 2 cut(s) | 147, 532 |
| BstPI | GGTNACC | 1 cut(s) | 58 |
| BstSCI | CCNGG | 2 cut(s) | 145, 530 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstSLI | GKGCMC | 1 cut(s) | 252 |
| BstV1I | GCAGC | 5 cut(s) | 67, 95, 752, 820, 823 |
| BstV2I | GAAGAC | 1 cut(s) | 374 |
| BstX2I | RGATCY | 1 cut(s) | 454 |
| BstYI | RGATCY | 1 cut(s) | 454 |
| BsuRI | GGCC | 3 cut(s) | 5, 9, 192 |
| BtgZI | GCGATG | 1 cut(s) | 650 |
| BtsCI | GGATG | 2 cut(s) | 76, 814 |
| BtsIMutI | CAGTG | 1 cut(s) | 561 |
| BveI | ACCTGC | 2 cut(s) | 31, 430 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 139 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| Cfr10I | RCCGGY | 1 cut(s) | 5 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| CseI | GACGC | 1 cut(s) | 439 |
| Csp6I | GTAC | 3 cut(s) | 106, 159, 729 |
| CviAII | CATG | 4 cut(s) | 109, 266, 363, 418 |
| CviQI | GTAC | 3 cut(s) | 106, 159, 729 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 6 cut(s) | 96, 187, 456, 529, 659, 767 |
| DpnII | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| DraIII | CACNNNGTG | 1 cut(s) | 830 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 477 |
| EarI | CTCTTC | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 2 cut(s) | 275, 840 |
| Eco147I | AGGCCT | 1 cut(s) | 192 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| Eco88I | CYCGRG | 2 cut(s) | 11, 65 |
| Eco91I | GGTNACC | 1 cut(s) | 58 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoO65I | GGTNACC | 1 cut(s) | 58 |
| EcoRII | CCWGG | 2 cut(s) | 145, 530 |
| EcoT14I | CCWWGG | 2 cut(s) | 275, 840 |
| EcoT22I | ATGCAT | 1 cut(s) | 267 |
| ErhI | CCWWGG | 2 cut(s) | 275, 840 |
| Esp3I | CGTCTC | 1 cut(s) | 329 |
| FaeI | CATG | 4 cut(s) | 112, 269, 366, 421 |
| FaqI | GGGAC | 1 cut(s) | 129 |
| FatI | CATG | 4 cut(s) | 108, 265, 362, 417 |
| FbaI | TGATCA | 1 cut(s) | 657 |
| Fnu4HI | GCNGC | 7 cut(s) | 38, 81, 84, 699, 741, 834, 837 |
| FokI | GGATG | 2 cut(s) | 83, 821 |
| FseI | GGCCGGCC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 7 cut(s) | 38, 81, 84, 699, 741, 834, 837 |
| FspBI | CTAG | 3 cut(s) | 299, 434, 827 |
| GluI | GCNGC | 7 cut(s) | 38, 81, 84, 699, 741, 834, 837 |
| GsuI | CTGGAG | 1 cut(s) | 537 |
| HaeIII | GGCC | 3 cut(s) | 5, 9, 192 |
| HapII | CCGG | 3 cut(s) | 6, 332, 520 |
| HgaI | GACGC | 1 cut(s) | 439 |
| Hin1II | CATG | 4 cut(s) | 112, 269, 366, 421 |
| HinfI | GANTC | 5 cut(s) | 20, 47, 52, 242, 523 |
| HpaII | CCGG | 3 cut(s) | 6, 332, 520 |
| HphI | GGTGA | 3 cut(s) | 70, 89, 224 |
| Hpy166II | GTNNAC | 1 cut(s) | 329 |
| Hpy188I | TCNGA | 4 cut(s) | 185, 459, 468, 774 |
| Hpy188III | TCNNGA | 4 cut(s) | 13, 92, 203, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 329 |
| Hpy99I | CGWCG | 2 cut(s) | 433, 519 |
| HpyAV | CCTTC | 2 cut(s) | 469, 583 |
| HpyCH4III | ACNGT | 3 cut(s) | 340, 724, 733 |
| HpyCH4IV | ACGT | 1 cut(s) | 871 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 83, 265, 857 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 80, 134, 568, 695, 842 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| HpySE526I | ACGT | 1 cut(s) | 871 |
| Hsp92II | CATG | 4 cut(s) | 112, 269, 366, 421 |
| KpnI | GGTACC | 1 cut(s) | 162 |
| KroI | GCCGGC | 1 cut(s) | 5 |
| KroNI | GCCGGC | 1 cut(s) | 7 |
| Ksp22I | TGATCA | 1 cut(s) | 657 |
| Kzo9I | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| LguI | GCTCTTC | 1 cut(s) | 477 |
| LmnI | GCTCC | 3 cut(s) | 673, 737, 817 |
| Lsp1109I | GCAGC | 5 cut(s) | 67, 95, 752, 820, 823 |
| LweI | GCATC | 8 cut(s) | 38, 61, 187, 196, 285, 622, 698, 799 |
| MaeI | CTAG | 3 cut(s) | 299, 434, 827 |
| MaeII | ACGT | 1 cut(s) | 871 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MalI | GATC | 6 cut(s) | 96, 187, 456, 529, 659, 767 |
| MbiI | CCGCTC | 1 cut(s) | 217 |
| MboI | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| MboII | GAAGA | 3 cut(s) | 374, 491, 494 |
| MflI | RGATCY | 1 cut(s) | 454 |
| MhlI | GDGCHC | 1 cut(s) | 252 |
| MluCI | AATT | 2 cut(s) | 230, 545 |
| MlyI | GAGTC | 2 cut(s) | 46, 251 |
| MmeI | TCCRAC | 3 cut(s) | 715, 765, 786 |
| MnlI | CCTC | 8 cut(s) | 20, 74, 371, 396, 483, 664, 700, 787 |
| Mph1103I | ATGCAT | 1 cut(s) | 267 |
| MroNI | GCCGGC | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 495, 594 |
| MspI | CCGG | 3 cut(s) | 6, 332, 520 |
| MspR9I | CCNGG | 2 cut(s) | 147, 532 |
| MvaI | CCWGG | 2 cut(s) | 147, 532 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 80, 134, 568, 695, 842 |
| NaeI | GCCGGC | 1 cut(s) | 7 |
| NdeII | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| NgoMIV | GCCGGC | 1 cut(s) | 5 |
| NlaIII | CATG | 4 cut(s) | 112, 269, 366, 421 |
| NlaIV | GGNNCC | 3 cut(s) | 129, 160, 273 |
| NmuCI | GTSAC | 1 cut(s) | 58 |
| NsiI | ATGCAT | 1 cut(s) | 267 |
| PaeR7I | CTCGAG | 1 cut(s) | 11 |
| PaqCI | CACCTGC | 1 cut(s) | 430 |
| PceI | AGGCCT | 1 cut(s) | 192 |
| PciSI | GCTCTTC | 1 cut(s) | 477 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 523 |
| PdiI | GCCGGC | 1 cut(s) | 7 |
| PfeI | GAWTC | 3 cut(s) | 20, 47, 523 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 174 |
| PfoI | TCCNGGA | 1 cut(s) | 530 |
| PkrI | GCNGC | 7 cut(s) | 39, 82, 85, 700, 742, 835, 838 |
| PleI | GAGTC | 2 cut(s) | 46, 250 |
| PpsI | GAGTC | 2 cut(s) | 46, 250 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp1406I | AACGTT | 1 cut(s) | 871 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 2 cut(s) | 145, 530 |
| PspEI | GGTNACC | 1 cut(s) | 58 |
| PspGI | CCWGG | 2 cut(s) | 145, 530 |
| PspN4I | GGNNCC | 3 cut(s) | 129, 160, 273 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 495, 527 |
| PstI | CTGCAG | 1 cut(s) | 85 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| PsuI | RGATCY | 1 cut(s) | 454 |
| RigI | GGCCGGCC | 1 cut(s) | 9 |
| RsaI | GTAC | 3 cut(s) | 107, 160, 730 |
| RsaNI | GTAC | 3 cut(s) | 106, 159, 729 |
| SapI | GCTCTTC | 1 cut(s) | 477 |
| SaqAI | TTAA | 2 cut(s) | 495, 594 |
| SatI | GCNGC | 7 cut(s) | 38, 81, 84, 699, 741, 834, 837 |
| Sau3AI | GATC | 6 cut(s) | 94, 185, 454, 527, 657, 765 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| SchI | GAGTC | 2 cut(s) | 46, 251 |
| ScrFI | CCNGG | 2 cut(s) | 147, 532 |
| SduI | GDGCHC | 1 cut(s) | 252 |
| SfaNI | GCATC | 8 cut(s) | 38, 61, 187, 196, 285, 622, 698, 799 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| Sfr274I | CTCGAG | 1 cut(s) | 11 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SlaI | CTCGAG | 1 cut(s) | 11 |
| SmlI | CTYRAG | 1 cut(s) | 11 |
| SmoI | CTYRAG | 1 cut(s) | 11 |
| Sse9I | AATT | 2 cut(s) | 230, 545 |
| SseBI | AGGCCT | 1 cut(s) | 192 |
| SsiI | CCGC | 3 cut(s) | 37, 217, 698 |
| SspI | AATATT | 1 cut(s) | 654 |
| SspMI | CTAG | 3 cut(s) | 299, 434, 827 |
| StuI | AGGCCT | 1 cut(s) | 192 |
| StyD4I | CCNGG | 2 cut(s) | 145, 530 |
| StyI | CCWWGG | 2 cut(s) | 275, 840 |
| TaaI | ACNGT | 3 cut(s) | 340, 724, 733 |
| TaiI | ACGT | 1 cut(s) | 874 |
| TaqI | TCGA | 3 cut(s) | 12, 50, 526 |
| TasI | AATT | 2 cut(s) | 230, 545 |
| TauI | GCSGC | 2 cut(s) | 40, 701 |
| TfiI | GAWTC | 3 cut(s) | 20, 47, 523 |
| Tru1I | TTAA | 2 cut(s) | 495, 594 |
| Tru9I | TTAA | 2 cut(s) | 495, 594 |
| TscAI | CASTG | 1 cut(s) | 561 |
| TseFI | GTSAC | 1 cut(s) | 58 |
| TseI | GCWGC | 5 cut(s) | 80, 83, 740, 833, 836 |
| Tsp45I | GTSAC | 1 cut(s) | 58 |
| TspDTI | ATGAA | 1 cut(s) | 568 |
| TspGWI | ACGGA | 1 cut(s) | 487 |
| TspRI | CASTG | 1 cut(s) | 561 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 1 cut(s) | 545 |
| XhoI | CTCGAG | 1 cut(s) | 11 |
| XspI | CTAG | 3 cut(s) | 299, 434, 827 |
| Zsp2I | ATGCAT | 1 cut(s) | 267 |