Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 82 |
| AciI | CCGC | 2 cut(s) | 83, 469 |
| AclWI | GGATC | 6 cut(s) | 202, 229, 382, 398, 436, 449 |
| AcuI | CTGAAG | 2 cut(s) | 152, 317 |
| AdeI | CACNNNGTG | 1 cut(s) | 13 |
| AgsI | TTSAA | 3 cut(s) | 179, 501, 518 |
| AjnI | CCWGG | 1 cut(s) | 546 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| Alw26I | GTCTC | 1 cut(s) | 347 |
| AlwI | GGATC | 6 cut(s) | 202, 229, 382, 398, 436, 449 |
| AoxI | GGCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 1 cut(s) | 88 |
| AspLEI | GCGC | 3 cut(s) | 88, 361, 514 |
| AspS9I | GGNCC | 3 cut(s) | 275, 544, 593 |
| AsuII | TTCGAA | 1 cut(s) | 463 |
| AvaII | GGWCC | 3 cut(s) | 275, 544, 593 |
| BamHI | GGATCC | 1 cut(s) | 441 |
| BbvCI | CCTCAGC | 1 cut(s) | 597 |
| BbvI | GCAGC | 1 cut(s) | 75 |
| BccI | CCATC | 5 cut(s) | 238, 298, 553, 575, 599 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 80, 114, 232, 266 |
| BciT130I | CCWGG | 1 cut(s) | 548 |
| BciVI | GTATCC | 1 cut(s) | 70 |
| BcoDI | GTCTC | 1 cut(s) | 347 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BfmI | CTRYAG | 3 cut(s) | 89, 232, 552 |
| BfoI | RGCGCY | 2 cut(s) | 89, 515 |
| BfuAI | ACCTGC | 1 cut(s) | 82 |
| BfuI | GTATCC | 1 cut(s) | 70 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 126, 135 |
| BisI | GCNGC | 2 cut(s) | 84, 89 |
| BlsI | GCNGC | 2 cut(s) | 85, 90 |
| Bme1390I | CCNGG | 1 cut(s) | 548 |
| Bme18I | GGWCC | 3 cut(s) | 275, 544, 593 |
| BmgT120I | GGNCC | 3 cut(s) | 275, 544, 593 |
| BmiI | GGNNCC | 4 cut(s) | 54, 291, 443, 545 |
| BmrFI | CCNGG | 1 cut(s) | 548 |
| BmsI | GCATC | 1 cut(s) | 474 |
| Bpu10I | CCTNAGC | 1 cut(s) | 597 |
| Bpu14I | TTCGAA | 1 cut(s) | 463 |
| BpuEI | CTTGAG | 1 cut(s) | 305 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaI | GGTCTC | 1 cut(s) | 347 |
| BsaJI | CCNNGG | 1 cut(s) | 63 |
| BsaWI | WCCGGW | 2 cut(s) | 55, 277 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseBI | CCWGG | 1 cut(s) | 548 |
| BseDI | CCNNGG | 1 cut(s) | 63 |
| BseGI | GGATG | 2 cut(s) | 489, 586 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseMII | CTCAG | 2 cut(s) | 137, 611 |
| BseXI | GCAGC | 1 cut(s) | 75 |
| BseYI | CCCAGC | 1 cut(s) | 563 |
| BshFI | GGCC | 1 cut(s) | 129 |
| BsiSI | CCGG | 2 cut(s) | 56, 278 |
| BslFI | GGGAC | 1 cut(s) | 342 |
| BsmAI | GTCTC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 1 cut(s) | 342 |
| BsnI | GGCC | 1 cut(s) | 129 |
| Bso31I | GGTCTC | 1 cut(s) | 347 |
| Bsp119I | TTCGAA | 1 cut(s) | 463 |
| Bsp143I | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| BspACI | CCGC | 2 cut(s) | 83, 469 |
| BspANI | GGCC | 1 cut(s) | 129 |
| BspCNI | CTCAG | 2 cut(s) | 138, 610 |
| BspLI | GGNNCC | 4 cut(s) | 54, 291, 443, 545 |
| BspMAI | CTGCAG | 1 cut(s) | 93 |
| BspMI | ACCTGC | 1 cut(s) | 82 |
| BspPI | GGATC | 6 cut(s) | 202, 229, 382, 398, 436, 449 |
| BspT104I | TTCGAA | 1 cut(s) | 463 |
| BspTNI | GGTCTC | 1 cut(s) | 347 |
| BssECI | CCNNGG | 1 cut(s) | 63 |
| BssMI | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| BssT1I | CCWWGG | 1 cut(s) | 63 |
| Bst2UI | CCWGG | 1 cut(s) | 548 |
| Bst4CI | ACNGT | 2 cut(s) | 269, 522 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 80, 317 |
| BstBI | TTCGAA | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 3 cut(s) | 81, 122, 140 |
| BstDEI | CTNAG | 4 cut(s) | 146, 254, 532, 597 |
| BstF5I | GGATG | 2 cut(s) | 489, 586 |
| BstH2I | RGCGCY | 2 cut(s) | 89, 515 |
| BstHHI | GCGC | 3 cut(s) | 88, 361, 514 |
| BstKTI | GATC | 7 cut(s) | 34, 100, 210, 224, 377, 406, 444 |
| BstMAI | GTCTC | 1 cut(s) | 347 |
| BstMBI | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 50, 80, 85, 126, 135, 317 |
| BstNI | CCWGG | 1 cut(s) | 548 |
| BstSCI | CCNGG | 1 cut(s) | 546 |
| BstSFI | CTRYAG | 3 cut(s) | 89, 232, 552 |
| BstV1I | GCAGC | 1 cut(s) | 75 |
| BstX2I | RGATCY | 4 cut(s) | 207, 221, 374, 441 |
| BstYI | RGATCY | 4 cut(s) | 207, 221, 374, 441 |
| BsuI | GTATCC | 1 cut(s) | 70 |
| BsuRI | GGCC | 1 cut(s) | 129 |
| BtgZI | GCGATG | 1 cut(s) | 572 |
| BtsCI | GGATG | 2 cut(s) | 489, 586 |
| BveI | ACCTGC | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 3 cut(s) | 81, 122, 140 |
| CfoI | GCGC | 3 cut(s) | 88, 361, 514 |
| Cfr13I | GGNCC | 3 cut(s) | 275, 544, 593 |
| CviAII | CATG | 2 cut(s) | 215, 312 |
| DdeI | CTNAG | 4 cut(s) | 146, 254, 532, 597 |
| DpnI | GATC | 7 cut(s) | 33, 99, 209, 223, 376, 405, 443 |
| DpnII | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| DraIII | CACNNNGTG | 1 cut(s) | 13 |
| EciI | GGCGGA | 1 cut(s) | 484 |
| Eco130I | CCWWGG | 1 cut(s) | 63 |
| Eco31I | GGTCTC | 1 cut(s) | 347 |
| Eco47I | GGWCC | 3 cut(s) | 275, 544, 593 |
| Eco57I | CTGAAG | 2 cut(s) | 152, 317 |
| EcoRII | CCWGG | 1 cut(s) | 546 |
| EcoT14I | CCWWGG | 1 cut(s) | 63 |
| ErhI | CCWWGG | 1 cut(s) | 63 |
| FaeI | CATG | 2 cut(s) | 218, 315 |
| FaiI | YATR | 7 cut(s) | 155, 216, 234, 264, 313, 418, 612 |
| FaqI | GGGAC | 1 cut(s) | 342 |
| FatI | CATG | 2 cut(s) | 214, 311 |
| Fnu4HI | GCNGC | 2 cut(s) | 84, 89 |
| FokI | GGATG | 2 cut(s) | 496, 593 |
| Fsp4HI | GCNGC | 2 cut(s) | 84, 89 |
| FspBI | CTAG | 1 cut(s) | 383 |
| GlaI | GCGC | 3 cut(s) | 87, 360, 513 |
| GluI | GCNGC | 2 cut(s) | 84, 89 |
| GsaI | CCCAGC | 1 cut(s) | 567 |
| HaeII | RGCGCY | 2 cut(s) | 89, 515 |
| HaeIII | GGCC | 1 cut(s) | 129 |
| HapII | CCGG | 2 cut(s) | 56, 278 |
| HhaI | GCGC | 3 cut(s) | 88, 361, 514 |
| Hin1II | CATG | 2 cut(s) | 218, 315 |
| Hin6I | GCGC | 3 cut(s) | 86, 359, 512 |
| HinP1I | GCGC | 3 cut(s) | 86, 359, 512 |
| HindIII | AAGCTT | 1 cut(s) | 140 |
| HinfI | GANTC | 2 cut(s) | 298, 394 |
| HpaII | CCGG | 2 cut(s) | 56, 278 |
| Hpy188I | TCNGA | 6 cut(s) | 147, 297, 303, 347, 408, 423 |
| Hpy99I | CGWCG | 1 cut(s) | 508 |
| HpyAV | CCTTC | 3 cut(s) | 127, 418, 459 |
| HpyCH4III | ACNGT | 2 cut(s) | 269, 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 506 |
| HpyCH4V | TGCA | 3 cut(s) | 91, 214, 320 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 50, 80, 85, 126, 135, 317 |
| HpyF3I | CTNAG | 4 cut(s) | 146, 254, 532, 597 |
| HpySE526I | ACGT | 1 cut(s) | 506 |
| Hsp92II | CATG | 2 cut(s) | 218, 315 |
| HspAI | GCGC | 3 cut(s) | 86, 359, 512 |
| Kzo9I | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| Lsp1109I | GCAGC | 1 cut(s) | 75 |
| LweI | GCATC | 1 cut(s) | 474 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MaeII | ACGT | 1 cut(s) | 506 |
| MaeIII | GTNAC | 2 cut(s) | 20, 522 |
| MalI | GATC | 7 cut(s) | 33, 99, 209, 223, 376, 405, 443 |
| MboI | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| MboII | GAAGA | 1 cut(s) | 26 |
| MflI | RGATCY | 4 cut(s) | 207, 221, 374, 441 |
| MluCI | AATT | 3 cut(s) | 179, 259, 321 |
| MnlI | CCTC | 8 cut(s) | 35, 141, 184, 212, 280, 303, 421, 606 |
| MseI | TTAA | 1 cut(s) | 324 |
| MspI | CCGG | 2 cut(s) | 56, 278 |
| MspR9I | CCNGG | 1 cut(s) | 548 |
| MvaI | CCWGG | 1 cut(s) | 548 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 50, 80, 85, 126, 135, 317 |
| NdeII | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| NlaIII | CATG | 2 cut(s) | 218, 315 |
| NlaIV | GGNNCC | 4 cut(s) | 54, 291, 443, 545 |
| NmuCI | GTSAC | 1 cut(s) | 522 |
| NspV | TTCGAA | 1 cut(s) | 463 |
| PfeI | GAWTC | 2 cut(s) | 298, 394 |
| PkrI | GCNGC | 2 cut(s) | 85, 90 |
| Psp6I | CCWGG | 1 cut(s) | 546 |
| PspFI | CCCAGC | 1 cut(s) | 563 |
| PspGI | CCWGG | 1 cut(s) | 546 |
| PspN4I | GGNNCC | 4 cut(s) | 54, 291, 443, 545 |
| PspPI | GGNCC | 3 cut(s) | 275, 544, 593 |
| PstI | CTGCAG | 1 cut(s) | 93 |
| PsuI | RGATCY | 4 cut(s) | 207, 221, 374, 441 |
| SaqAI | TTAA | 1 cut(s) | 324 |
| SatI | GCNGC | 2 cut(s) | 84, 89 |
| Sau3AI | GATC | 7 cut(s) | 31, 97, 207, 221, 374, 403, 441 |
| Sau96I | GGNCC | 3 cut(s) | 275, 544, 593 |
| ScrFI | CCNGG | 1 cut(s) | 548 |
| SetI | ASST | 9 cut(s) | 27, 96, 144, 152, 291, 339, 388, 479, 509 |
| SfaNI | GCATC | 1 cut(s) | 474 |
| SfcI | CTRYAG | 3 cut(s) | 89, 232, 552 |
| SfuI | TTCGAA | 1 cut(s) | 463 |
| SinI | GGWCC | 3 cut(s) | 275, 544, 593 |
| SmlI | CTYRAG | 1 cut(s) | 284 |
| SmoI | CTYRAG | 1 cut(s) | 284 |
| Sse9I | AATT | 3 cut(s) | 179, 259, 321 |
| SsiI | CCGC | 2 cut(s) | 83, 469 |
| SspMI | CTAG | 1 cut(s) | 383 |
| StyD4I | CCNGG | 1 cut(s) | 546 |
| StyI | CCWWGG | 1 cut(s) | 63 |
| TaaI | ACNGT | 2 cut(s) | 269, 522 |
| TaiI | ACGT | 1 cut(s) | 509 |
| TaqI | TCGA | 1 cut(s) | 463 |
| TasI | AATT | 3 cut(s) | 179, 259, 321 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TfiI | GAWTC | 2 cut(s) | 298, 394 |
| Tru1I | TTAA | 1 cut(s) | 324 |
| Tru9I | TTAA | 1 cut(s) | 324 |
| TseFI | GTSAC | 1 cut(s) | 522 |
| TseI | GCWGC | 1 cut(s) | 88 |
| Tsp45I | GTSAC | 1 cut(s) | 522 |
| TspDTI | ATGAA | 2 cut(s) | 26, 142 |
| TspGWI | ACGGA | 2 cut(s) | 434, 593 |
| VpaK11BI | GGWCC | 3 cut(s) | 275, 544, 593 |
| XspI | CTAG | 1 cut(s) | 383 |